RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 NISCHQ9Y2I1 1504 aa15.62■□□□□ 0.09
SYNE1-205ENST00000367251 DCAF8L2P0C7V8 631 aa15.36■□□□□ 0.05
SYNE1-205ENST00000367251 SUPT5HO00267 1087 aaKnown RBP14.71□□□□□ -0.06
SYNE1-205ENST00000367251 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
SYNE1-205ENST00000367251 FAM9AQ8IZU1 332 aaPredicted RBP14.12□□□□□ -0.15
SYNE1-205ENST00000367251 PELP1Q8IZL8 1130 aaKnown RBP14.05□□□□□ -0.16
SYNE1-205ENST00000367251 APLP2Q06481 763 aa13.99□□□□□ -0.17
SYNE1-205ENST00000367251 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
SYNE1-205ENST00000367251 ZEB1P37275 1124 aaPredicted RBP13.96□□□□□ -0.18
SYNE1-205ENST00000367251 PCGF6Q9BYE7 350 aa13.84□□□□□ -0.19
SYNE1-205ENST00000367251 TRIM41Q8WV44 630 aa13.79□□□□□ -0.2
SYNE1-205ENST00000367251 CENPBP07199 599 aaPredicted RBP13.68□□□□□ -0.22
SYNE1-205ENST00000367251 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-205ENST00000367251 ATP1B4Q9UN42 357 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-205ENST00000367251 TRIM26Q12899 539 aaPredicted RBP13.54□□□□□ -0.24
SYNE1-205ENST00000367251 UBTFP17480 764 aaKnown RBP13.49□□□□□ -0.25
SYNE1-205ENST00000367251 RANGAP1P46060 587 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-205ENST00000367251 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-205ENST00000367251 HRCP23327 699 aa13.44□□□□□ -0.26
SYNE1-205ENST00000367251 MYT1LQ9UL68 1186 aa13.44□□□□□ -0.26
SYNE1-205ENST00000367251 CHIC1Q5VXU3 224 aa13.42□□□□□ -0.26
SYNE1-205ENST00000367251 ERICH6Q7L0X2 663 aa13.4□□□□□ -0.26
SYNE1-205ENST00000367251 MYT1Q01538 1121 aa13.4□□□□□ -0.26
SYNE1-205ENST00000367251 NEFLP07196 543 aa13.25□□□□□ -0.29
SYNE1-205ENST00000367251 LOC105371045A0A1W2PR82 267 aa13.17□□□□□ -0.3
SYNE1-205ENST00000367251 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-205ENST00000367251 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
SYNE1-205ENST00000367251 PPARGC1BQ86YN6 1023 aaKnown RBP13.09□□□□□ -0.31
SYNE1-205ENST00000367251 YTHDC1Q96MU7 727 aaKnown RBP13.09□□□□□ -0.31
SYNE1-205ENST00000367251 ZCCHC6Q5VYS8 1495 aaKnown RBP13.02□□□□□ -0.32
SYNE1-205ENST00000367251 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.32
SYNE1-205ENST00000367251 CCDC180Q9P1Z9 1646 aa13□□□□□ -0.33
SYNE1-205ENST00000367251 POLR3GLQ9BT43 218 aa13□□□□□ -0.33
SYNE1-205ENST00000367251 DAXXQ9UER7 740 aaPredicted RBP12.94□□□□□ -0.34
SYNE1-205ENST00000367251 ABCC9O60706 1549 aa12.93□□□□□ -0.34
SYNE1-205ENST00000367251 DIEXFQ68CQ4 756 aaKnown RBP12.93□□□□□ -0.34
SYNE1-205ENST00000367251 ITGAEP38570 1179 aa12.89□□□□□ -0.35
SYNE1-205ENST00000367251 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
SYNE1-205ENST00000367251 CNGB1Q14028 1251 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-205ENST00000367251 CSRNP3Q8WYN3 585 aa12.74□□□□□ -0.37
SYNE1-205ENST00000367251 SLC24A1O60721 1099 aa12.74□□□□□ -0.37
SYNE1-205ENST00000367251 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
SYNE1-205ENST00000367251 FAM50AQ14320 339 aaKnown RBP12.72□□□□□ -0.37
SYNE1-205ENST00000367251 PABPN1Q86U42 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
SYNE1-205ENST00000367251 SCRIBQ14160 1630 aa12.72□□□□□ -0.37
SYNE1-205ENST00000367251 BCANQ96GW7 911 aa12.68□□□□□ -0.38
SYNE1-205ENST00000367251 CLSPNQ9HAW4 1339 aa12.68□□□□□ -0.38
SYNE1-205ENST00000367251 ANP32CO43423 234 aa12.64□□□□□ -0.39
SYNE1-205ENST00000367251 TRIM52Q96A61 297 aa12.61□□□□□ -0.39
SYNE1-205ENST00000367251 GTF3C3Q9Y5Q9 886 aa12.6□□□□□ -0.39
SYNE1-205ENST00000367251 ACIN1Q9UKV3 1341 aaKnown RBP12.59□□□□□ -0.39
SYNE1-205ENST00000367251 ZBTB47Q9UFB7 747 aaPredicted RBP12.58□□□□□ -0.4
SYNE1-205ENST00000367251 NEUROD1Q13562 356 aa12.57□□□□□ -0.4
SYNE1-205ENST00000367251 EEA1Q15075 1411 aa12.55□□□□□ -0.4
SYNE1-205ENST00000367251 RTL5Q5HYW3 569 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-205ENST00000367251 BCL11AQ9H165 835 aa12.54□□□□□ -0.4
SYNE1-205ENST00000367251 PLPPR3Q6T4P5 718 aa12.52□□□□□ -0.41
SYNE1-205ENST00000367251 RB1CC1Q8TDY2 1594 aa12.51□□□□□ -0.41
SYNE1-205ENST00000367251 NACADO15069 1562 aa12.5□□□□□ -0.41
SYNE1-205ENST00000367251 CDK11AQ9UQ88 783 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-205ENST00000367251 ESF1Q9H501 851 aaKnown RBP12.48□□□□□ -0.41
SYNE1-205ENST00000367251 FBLN2P98095 1184 aa12.47□□□□□ -0.41
SYNE1-205ENST00000367251 RSF1Q96T23 1441 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-205ENST00000367251 NEFMP07197 916 aa12.42□□□□□ -0.42
SYNE1-205ENST00000367251 GOLGA3Q08378 1498 aa12.4□□□□□ -0.42
SYNE1-205ENST00000367251 MYO15BQ96JP2 1530 aa12.38□□□□□ -0.43
SYNE1-205ENST00000367251 TONSLQ96HA7 1378 aa12.38□□□□□ -0.43
SYNE1-205ENST00000367251 CLIP1P30622 1438 aa12.37□□□□□ -0.43
SYNE1-205ENST00000367251 A0A0G2JS52 829 aa12.37□□□□□ -0.43
SYNE1-205ENST00000367251 P3H3Q8IVL6 736 aa12.34□□□□□ -0.43
SYNE1-205ENST00000367251 ZNF326Q5BKZ1 582 aaKnown RBP12.34□□□□□ -0.43
SYNE1-205ENST00000367251 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.44
SYNE1-205ENST00000367251 CEP162Q5TB80 1403 aa12.32□□□□□ -0.44
SYNE1-205ENST00000367251 BAZ1AQ9NRL2 1556 aaPredicted RBP12.31□□□□□ -0.44
SYNE1-205ENST00000367251 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
SYNE1-205ENST00000367251 SCAF1Q9H7N4 1312 aaKnown RBP12.29□□□□□ -0.44
SYNE1-205ENST00000367251 STAG3Q9UJ98 1225 aa12.29□□□□□ -0.44
SYNE1-205ENST00000367251 WRNQ14191 1432 aaPredicted RBP eCLIP12.28□□□□□ -0.44
SYNE1-205ENST00000367251 CANXP27824 592 aaKnown RBP12.27□□□□□ -0.44
SYNE1-205ENST00000367251 ANP32AP39687 249 aaKnown RBP12.27□□□□□ -0.45
SYNE1-205ENST00000367251 BAZ1BQ9UIG0 1483 aaKnown RBP12.23□□□□□ -0.45
SYNE1-205ENST00000367251 MTUS2Q5JR59 1369 aa12.22□□□□□ -0.45
SYNE1-205ENST00000367251 FKBP8Q14318 412 aa12.21□□□□□ -0.45
SYNE1-205ENST00000367251 NPM2Q86SE8 214 aaKnown RBP12.21□□□□□ -0.45
SYNE1-205ENST00000367251 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.46
SYNE1-205ENST00000367251 KIF27Q86VH2 1401 aa12.2□□□□□ -0.46
SYNE1-205ENST00000367251 DDX10Q13206 875 aaKnown RBP12.19□□□□□ -0.46
SYNE1-205ENST00000367251 NPM1P06748 294 aaKnown RBP eCLIP12.18□□□□□ -0.46
SYNE1-205ENST00000367251 HNRNPUQ00839 825 aaKnown RBP eCLIP12.17□□□□□ -0.46
SYNE1-205ENST00000367251 CHGAP10645 457 aaKnown RBP12.16□□□□□ -0.46
SYNE1-205ENST00000367251 CDK11BP21127 795 aaKnown RBP12.14□□□□□ -0.47
SYNE1-205ENST00000367251 ARID3CA6NKF2 412 aa12.13□□□□□ -0.47
SYNE1-205ENST00000367251 MIER1Q8N108 512 aa12.13□□□□□ -0.47
SYNE1-205ENST00000367251 PLEKHG5O94827 1062 aa12.11□□□□□ -0.47
SYNE1-205ENST00000367251 EIF4G2P78344 907 aaKnown RBP eCLIP12.1□□□□□ -0.47
SYNE1-205ENST00000367251 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-205ENST00000367251 TSPY4P0CV99 314 aa12.1□□□□□ -0.47
SYNE1-205ENST00000367251 TSPY10P0CW01 314 aa12.1□□□□□ -0.47
SYNE1-205ENST00000367251 TMC1Q8TDI8 760 aa12.08□□□□□ -0.48
SYNE1-205ENST00000367251 FAM9BQ8IZU0 186 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms