RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MT1MQ8N339 61 aa5.99□□□□□ -1.45
UPF1-201ENST00000262803 MUC2Q02817 5179 aa5.99□□□□□ -1.45
UPF1-201ENST00000262803 RNF213Q63HN8 5207 aa5.89□□□□□ -1.47
UPF1-201ENST00000262803 UBR4Q5T4S7 5183 aa5.86□□□□□ -1.47
UPF1-201ENST00000262803 LOC100996750A0A140TA64 210 aa5.84□□□□□ -1.47
UPF1-201ENST00000262803 KRTAP9-2Q9BYQ4 174 aa5.84□□□□□ -1.48
UPF1-201ENST00000262803 HMCN2Q8NDA2 5059 aa5.82□□□□□ -1.48
UPF1-201ENST00000262803 KRTAP4-3Q9BYR4 195 aa5.81□□□□□ -1.48
UPF1-201ENST00000262803 MT4P47944 62 aa5.79□□□□□ -1.48
UPF1-201ENST00000262803 FAT4Q6V0I7 4981 aa5.78□□□□□ -1.48
UPF1-201ENST00000262803 KRTAP19-7Q3SYF9 63 aa5.75□□□□□ -1.49
UPF1-201ENST00000262803 FSIP2Q5CZC0 6907 aa5.73□□□□□ -1.49
UPF1-201ENST00000262803 MT1AP04731 61 aa5.71□□□□□ -1.5
UPF1-201ENST00000262803 PRM1P04553 51 aa5.67□□□□□ -1.5
UPF1-201ENST00000262803 LCE2AQ5TA79 106 aaPredicted RBP5.66□□□□□ -1.5
UPF1-201ENST00000262803 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.5
UPF1-201ENST00000262803 LCE1BQ5T7P3 118 aa5.61□□□□□ -1.51
UPF1-201ENST00000262803 LCE1DQ5T752 114 aa5.6□□□□□ -1.51
UPF1-201ENST00000262803 LCE1AQ5T7P2 110 aa5.59□□□□□ -1.51
UPF1-201ENST00000262803 KRTAP20-1Q3LI63 56 aa5.56□□□□□ -1.52
UPF1-201ENST00000262803 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
UPF1-201ENST00000262803 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
UPF1-201ENST00000262803 KRTAP2-1Q9BYU5 128 aa5.54□□□□□ -1.52
UPF1-201ENST00000262803 KRTAP6-3Q3LI67 103 aa5.47□□□□□ -1.53
UPF1-201ENST00000262803 KRTAP4-9Q9BYQ8 210 aa5.45□□□□□ -1.54
UPF1-201ENST00000262803 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
UPF1-201ENST00000262803 LCE4AQ5TA78 99 aa5.39□□□□□ -1.55
UPF1-201ENST00000262803 KRTAP9-6A8MVA2 160 aa5.37□□□□□ -1.55
UPF1-201ENST00000262803 LCE5AQ5TCM9 118 aa5.35□□□□□ -1.55
UPF1-201ENST00000262803 KRTAP9-7A8MTY7 169 aa5.31□□□□□ -1.56
UPF1-201ENST00000262803 SYNE2Q8WXH0 6885 aaKnown RBP5.27□□□□□ -1.57
UPF1-201ENST00000262803 KRTAP9-4Q9BYQ2 154 aa5.22□□□□□ -1.57
UPF1-201ENST00000262803 KRTAP6-1Q3LI64 71 aa5.21□□□□□ -1.57
UPF1-201ENST00000262803 KRTAP2-2Q9BYT5 123 aa5.18□□□□□ -1.58
UPF1-201ENST00000262803 KRTAP6-2Q3LI66 62 aa5.1□□□□□ -1.59
UPF1-201ENST00000262803 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.08□□□□□ -1.6
UPF1-201ENST00000262803 FCGBPQ9Y6R7 5405 aaPredicted RBP5.07□□□□□ -1.6
UPF1-201ENST00000262803 USH2AO75445 5202 aa5.06□□□□□ -1.6
UPF1-201ENST00000262803 LCE1CQ5T751 118 aa4.88□□□□□ -1.63
UPF1-201ENST00000262803 LCE1EQ5T753 118 aa4.88□□□□□ -1.63
UPF1-201ENST00000262803 LCE1FQ5T754 118 aa4.88□□□□□ -1.63
UPF1-201ENST00000262803 DSTQ03001 7570 aaKnown RBP4.87□□□□□ -1.63
UPF1-201ENST00000262803 KMT2DO14686 5537 aa4.74□□□□□ -1.65
UPF1-201ENST00000262803 MACF1Q9UPN3 7388 aaKnown RBP4.71□□□□□ -1.66
UPF1-201ENST00000262803 SSPOA2VEC9 5147 aa4.69□□□□□ -1.66
UPF1-201ENST00000262803 KRTAP9-9Q9BYP9 154 aa4.68□□□□□ -1.66
UPF1-201ENST00000262803 GPR98Q8WXG9 6306 aa4.5□□□□□ -1.69
UPF1-201ENST00000262803 KRTAP5-9P26371 169 aa4.49□□□□□ -1.69
UPF1-201ENST00000262803 MUC12Q9UKN1 5478 aa4.47□□□□□ -1.69
UPF1-201ENST00000262803 MUC19Q7Z5P9 8384 aa4.34□□□□□ -1.71
UPF1-201ENST00000262803 NEBP20929 6669 aa4.3□□□□□ -1.72
UPF1-201ENST00000262803 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
UPF1-201ENST00000262803 KRTAP20-2Q3LI61 65 aa4.26□□□□□ -1.73
UPF1-201ENST00000262803 KRTAP4-6Q9BYQ5 205 aa4.25□□□□□ -1.73
UPF1-201ENST00000262803 KRTAP4-11Q9BYQ6 195 aa4.2□□□□□ -1.74
UPF1-201ENST00000262803 KRTAP5-4Q6L8H1 288 aa4.1□□□□□ -1.75
UPF1-201ENST00000262803 KRTAP5-5Q701N2 237 aaPredicted RBP3.98□□□□□ -1.77
UPF1-201ENST00000262803 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
UPF1-201ENST00000262803 KRTAP4-12Q9BQ66 201 aa3.73□□□□□ -1.81
UPF1-201ENST00000262803 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
UPF1-201ENST00000262803 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
UPF1-201ENST00000262803 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
UPF1-201ENST00000262803 HMCN1Q96RW7 5635 aa3.48□□□□□ -1.85
UPF1-201ENST00000262803 AHNAK2Q8IVF2 5795 aa3.41□□□□□ -1.86
UPF1-201ENST00000262803 KRTAP5-10Q6L8G5 202 aa3.18□□□□□ -1.9
UPF1-201ENST00000262803 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
UPF1-201ENST00000262803 KRTAP5-8O75690 187 aa3.08□□□□□ -1.92
UPF1-201ENST00000262803 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
UPF1-201ENST00000262803 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
UPF1-201ENST00000262803 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
UPF1-201ENST00000262803 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
UPF1-201ENST00000262803 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.97
UPF1-201ENST00000262803 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
UPF1-201ENST00000262803 KRTAP5-7Q6L8G8 165 aa2.58□□□□□ -2
UPF1-201ENST00000262803 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.51□□□□□ -2.01
UPF1-201ENST00000262803 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
UPF1-201ENST00000262803 MUC16Q8WXI7 14507 aa1.68□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 11 ms