RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 KRTAP9-2Q9BYQ4 174 aa5.82□□□□□ -1.48
SMARCC1-201ENST00000254480 MUC17Q685J3 4493 aa5.77□□□□□ -1.49
SMARCC1-201ENST00000254480 ABCA13Q86UQ4 5058 aa5.73□□□□□ -1.49
SMARCC1-201ENST00000254480 LCE1BQ5T7P3 118 aa5.73□□□□□ -1.49
SMARCC1-201ENST00000254480 PRM1P04553 51 aa5.7□□□□□ -1.5
SMARCC1-201ENST00000254480 SYNE1Q8NF91 8797 aaKnown RBP5.69□□□□□ -1.5
SMARCC1-201ENST00000254480 LCE1DQ5T752 114 aa5.69□□□□□ -1.5
SMARCC1-201ENST00000254480 KRTAP19-6Q3LI70 58 aa5.68□□□□□ -1.5
SMARCC1-201ENST00000254480 MT3P25713 68 aa5.68□□□□□ -1.5
SMARCC1-201ENST00000254480 SYNE2Q8WXH0 6885 aaKnown RBP5.61□□□□□ -1.51
SMARCC1-201ENST00000254480 KRTAP4-9Q9BYQ8 210 aa5.6□□□□□ -1.51
SMARCC1-201ENST00000254480 UBR4Q5T4S7 5183 aa5.59□□□□□ -1.51
SMARCC1-201ENST00000254480 FAT4Q6V0I7 4981 aa5.56□□□□□ -1.52
SMARCC1-201ENST00000254480 HMCN2Q8NDA2 5059 aa5.53□□□□□ -1.52
SMARCC1-201ENST00000254480 MUC2Q02817 5179 aa5.5□□□□□ -1.53
SMARCC1-201ENST00000254480 KRTAP19-7Q3SYF9 63 aa5.49□□□□□ -1.53
SMARCC1-201ENST00000254480 LCE2AQ5TA79 106 aaPredicted RBP5.44□□□□□ -1.54
SMARCC1-201ENST00000254480 RNF213Q63HN8 5207 aa5.43□□□□□ -1.54
SMARCC1-201ENST00000254480 KRTAP9-6A0A140TA67 174 aa5.43□□□□□ -1.54
SMARCC1-201ENST00000254480 MT1AP04731 61 aa5.33□□□□□ -1.56
SMARCC1-201ENST00000254480 LCE5AQ5TCM9 118 aa5.33□□□□□ -1.56
SMARCC1-201ENST00000254480 KRTAP2-3P0C7H8 128 aa5.32□□□□□ -1.56
SMARCC1-201ENST00000254480 KRTAP2-4Q9BYR9 128 aa5.32□□□□□ -1.56
SMARCC1-201ENST00000254480 KRTAP2-1Q9BYU5 128 aa5.32□□□□□ -1.56
SMARCC1-201ENST00000254480 KRTAP20-1Q3LI63 56 aa5.21□□□□□ -1.57
SMARCC1-201ENST00000254480 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.57
SMARCC1-201ENST00000254480 KRTAP9-7A8MTY7 169 aa5.19□□□□□ -1.58
SMARCC1-201ENST00000254480 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
SMARCC1-201ENST00000254480 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.58
SMARCC1-201ENST00000254480 KRTAP9-6A8MVA2 160 aa5.12□□□□□ -1.59
SMARCC1-201ENST00000254480 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.98□□□□□ -1.61
SMARCC1-201ENST00000254480 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
SMARCC1-201ENST00000254480 LCE1AQ5T7P2 110 aa4.96□□□□□ -1.62
SMARCC1-201ENST00000254480 KRTAP9-4Q9BYQ2 154 aa4.96□□□□□ -1.62
SMARCC1-201ENST00000254480 FCGBPQ9Y6R7 5405 aaPredicted RBP4.93□□□□□ -1.62
SMARCC1-201ENST00000254480 LCE1CQ5T751 118 aa4.88□□□□□ -1.63
SMARCC1-201ENST00000254480 LCE1EQ5T753 118 aa4.88□□□□□ -1.63
SMARCC1-201ENST00000254480 LCE1FQ5T754 118 aa4.88□□□□□ -1.63
SMARCC1-201ENST00000254480 DSTQ03001 7570 aaKnown RBP4.84□□□□□ -1.63
SMARCC1-201ENST00000254480 USH2AO75445 5202 aa4.81□□□□□ -1.64
SMARCC1-201ENST00000254480 KMT2DO14686 5537 aa4.79□□□□□ -1.64
SMARCC1-201ENST00000254480 LCE4AQ5TA78 99 aa4.78□□□□□ -1.64
SMARCC1-201ENST00000254480 KRTAP2-2Q9BYT5 123 aa4.78□□□□□ -1.64
SMARCC1-201ENST00000254480 MACF1Q9UPN3 7388 aaKnown RBP4.62□□□□□ -1.67
SMARCC1-201ENST00000254480 KRTAP4-6Q9BYQ5 205 aa4.37□□□□□ -1.71
SMARCC1-201ENST00000254480 SSPOA2VEC9 5147 aa4.35□□□□□ -1.71
SMARCC1-201ENST00000254480 KRTAP9-9Q9BYP9 154 aa4.34□□□□□ -1.71
SMARCC1-201ENST00000254480 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
SMARCC1-201ENST00000254480 MUC12Q9UKN1 5478 aa4.29□□□□□ -1.72
SMARCC1-201ENST00000254480 NEBP20929 6669 aa4.28□□□□□ -1.72
SMARCC1-201ENST00000254480 MUC19Q7Z5P9 8384 aa4.17□□□□□ -1.74
SMARCC1-201ENST00000254480 KRTAP5-9P26371 169 aa4.14□□□□□ -1.75
SMARCC1-201ENST00000254480 KRTAP4-4Q9BYR3 166 aa4.14□□□□□ -1.75
SMARCC1-201ENST00000254480 KRTAP20-2Q3LI61 65 aa4.12□□□□□ -1.75
SMARCC1-201ENST00000254480 KRTAP4-12Q9BQ66 201 aa4.07□□□□□ -1.76
SMARCC1-201ENST00000254480 KRTAP4-2Q9BYR5 136 aa4.07□□□□□ -1.76
SMARCC1-201ENST00000254480 MDN1Q9NU22 5596 aa4.06□□□□□ -1.76
SMARCC1-201ENST00000254480 KRTAP5-5Q701N2 237 aaPredicted RBP3.72□□□□□ -1.81
SMARCC1-201ENST00000254480 KRTAP5-4Q6L8H1 288 aa3.69□□□□□ -1.82
SMARCC1-201ENST00000254480 GPR98Q8WXG9 6306 aa3.63□□□□□ -1.83
SMARCC1-201ENST00000254480 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
SMARCC1-201ENST00000254480 KRTAP5-3Q6L8H2 238 aa3.33□□□□□ -1.88
SMARCC1-201ENST00000254480 HMCN1Q96RW7 5635 aa3.24□□□□□ -1.89
SMARCC1-201ENST00000254480 KRTAP5-8O75690 187 aa3.14□□□□□ -1.91
SMARCC1-201ENST00000254480 KRTAP5-10Q6L8G5 202 aa2.94□□□□□ -1.94
SMARCC1-201ENST00000254480 PHGR1C9JFL3 82 aa2.92□□□□□ -1.94
SMARCC1-201ENST00000254480 AHNAK2Q8IVF2 5795 aa2.9□□□□□ -1.95
SMARCC1-201ENST00000254480 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
SMARCC1-201ENST00000254480 MUC5BQ9HC84 5762 aaPredicted RBP2.71□□□□□ -1.97
SMARCC1-201ENST00000254480 KRTAP5-1Q6L8H4 278 aa2.69□□□□□ -1.98
SMARCC1-201ENST00000254480 AHNAKQ09666 5890 aaKnown RBP2.63□□□□□ -1.99
SMARCC1-201ENST00000254480 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
SMARCC1-201ENST00000254480 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
SMARCC1-201ENST00000254480 KRTAP21-1Q3LI58 79 aa2.19□□□□□ -2.06
SMARCC1-201ENST00000254480 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.1□□□□□ -2.07
SMARCC1-201ENST00000254480 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
SMARCC1-201ENST00000254480 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 7.1 ms