RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 C4orf26Q17RF5 130 aa6.33□□□□□ -1.4
PNKP-217ENST00000625216 SPANXA2-OT1Q8N9U9 137 aa6.31□□□□□ -1.4
PNKP-217ENST00000625216 TMEM258P61165 79 aa6.3□□□□□ -1.4
PNKP-217ENST00000625216 KRTAP9-8Q9BYQ0 159 aa6.3□□□□□ -1.4
PNKP-217ENST00000625216 KRTAP3-1Q9BYR8 98 aa6.27□□□□□ -1.41
PNKP-217ENST00000625216 DMAC1Q96GE9 116 aa6.26□□□□□ -1.41
PNKP-217ENST00000625216 ATP5EP56381 51 aaPredicted RBP6.24□□□□□ -1.41
PNKP-217ENST00000625216 USH2AO75445 5202 aa6.2□□□□□ -1.42
PNKP-217ENST00000625216 A8MUN3 132 aa6.19□□□□□ -1.42
PNKP-217ENST00000625216 MT2AP02795 61 aa6.19□□□□□ -1.42
PNKP-217ENST00000625216 ACYP2P14621 99 aa6.15□□□□□ -1.42
PNKP-217ENST00000625216 COA5Q86WW8 74 aa6.15□□□□□ -1.42
PNKP-217ENST00000625216 SSPOA2VEC9 5147 aa6.14□□□□□ -1.43
PNKP-217ENST00000625216 H1FX-AS1Q4G0G2 97 aa6.14□□□□□ -1.43
PNKP-217ENST00000625216 MT1FP04733 61 aa6.13□□□□□ -1.43
PNKP-217ENST00000625216 KRTAP10-10P60014 251 aa6.13□□□□□ -1.43
PNKP-217ENST00000625216 SERP1Q9Y6X1 66 aa6.11□□□□□ -1.43
PNKP-217ENST00000625216 KRTAP9-3Q9BYQ3 159 aa6.1□□□□□ -1.43
PNKP-217ENST00000625216 S4R3F8 94 aa6.08□□□□□ -1.44
PNKP-217ENST00000625216 LCA10Q71F78 164 aa6.07□□□□□ -1.44
PNKP-217ENST00000625216 CHKB-CPT1BH3BT56 60 aa6.06□□□□□ -1.44
PNKP-217ENST00000625216 LCE2BO14633 110 aa6.05□□□□□ -1.44
PNKP-217ENST00000625216 KRTAP3-3Q9BYR6 98 aa6.05□□□□□ -1.44
PNKP-217ENST00000625216 RPS28P62857 69 aaKnown RBP6.01□□□□□ -1.45
PNKP-217ENST00000625216 FCGBPQ9Y6R7 5405 aaPredicted RBP6.01□□□□□ -1.45
PNKP-217ENST00000625216 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.97□□□□□ -1.45
PNKP-217ENST00000625216 KRTAP19-1Q8IUB9 90 aa5.96□□□□□ -1.46
PNKP-217ENST00000625216 KRTAP9-7A8MTY7 169 aa5.95□□□□□ -1.46
PNKP-217ENST00000625216 SPTSSBQ8NFR3 76 aa5.94□□□□□ -1.46
PNKP-217ENST00000625216 CSAG1Q6PB30 78 aa5.92□□□□□ -1.46
PNKP-217ENST00000625216 SMIM26A0A096LP01 95 aa5.91□□□□□ -1.46
PNKP-217ENST00000625216 KRTAP19-6Q3LI70 58 aa5.88□□□□□ -1.47
PNKP-217ENST00000625216 LINC01558Q9Y6Z2 57 aa5.86□□□□□ -1.47
PNKP-217ENST00000625216 Q1T7F1 81 aa5.83□□□□□ -1.48
PNKP-217ENST00000625216 KRTAP3-2Q9BYR7 98 aa5.81□□□□□ -1.48
PNKP-217ENST00000625216 MACF1Q9UPN3 7388 aaKnown RBP5.8□□□□□ -1.48
PNKP-217ENST00000625216 H0YAA0 97 aa5.8□□□□□ -1.48
PNKP-217ENST00000625216 ADM2Q7Z4H4 148 aa5.79□□□□□ -1.48
PNKP-217ENST00000625216 V9GYY9 64 aa5.79□□□□□ -1.48
PNKP-217ENST00000625216 A0A1B0GU69 56 aa5.78□□□□□ -1.48
PNKP-217ENST00000625216 PRR15LQ9BU68 103 aa5.78□□□□□ -1.48
PNKP-217ENST00000625216 P0C880 135 aa5.77□□□□□ -1.49
PNKP-217ENST00000625216 PSPHP1O15172 72 aa5.75□□□□□ -1.49
PNKP-217ENST00000625216 SEC61GP60059 68 aa5.74□□□□□ -1.49
PNKP-217ENST00000625216 SYNE2Q8WXH0 6885 aaKnown RBP5.74□□□□□ -1.49
PNKP-217ENST00000625216 Q5VV11 94 aa5.72□□□□□ -1.49
PNKP-217ENST00000625216 SPRR2GQ9BYE4 73 aa5.69□□□□□ -1.5
PNKP-217ENST00000625216 KRTAP19-8Q3LI54 63 aa5.65□□□□□ -1.5
PNKP-217ENST00000625216 A0A1B0GU33 70 aa5.64□□□□□ -1.51
PNKP-217ENST00000625216 KRTAP13-4Q3LI77 160 aa5.64□□□□□ -1.51
PNKP-217ENST00000625216 MT1BP07438 61 aa5.63□□□□□ -1.51
PNKP-217ENST00000625216 CRIPTQ9P021 101 aa5.63□□□□□ -1.51
PNKP-217ENST00000625216 KRTAP6-3Q3LI67 103 aa5.61□□□□□ -1.51
PNKP-217ENST00000625216 A6NN06 94 aa5.6□□□□□ -1.51
PNKP-217ENST00000625216 M0QZ58 72 aa5.58□□□□□ -1.52
PNKP-217ENST00000625216 SPATA8Q6RVD6 105 aa5.58□□□□□ -1.52
PNKP-217ENST00000625216 UQCR11O14957 56 aa5.57□□□□□ -1.52
PNKP-217ENST00000625216 R4GN34 69 aa5.57□□□□□ -1.52
PNKP-217ENST00000625216 A6NED7 52 aa5.55□□□□□ -1.52
PNKP-217ENST00000625216 KRTAP10-5P60370 271 aa5.53□□□□□ -1.52
PNKP-217ENST00000625216 MIR22HGQ0VDD5 57 aa5.51□□□□□ -1.53
PNKP-217ENST00000625216 A8MU10 97 aa5.5□□□□□ -1.53
PNKP-217ENST00000625216 A0A0D9SG42 100 aa5.48□□□□□ -1.53
PNKP-217ENST00000625216 LINC01554Q52M75 96 aa5.47□□□□□ -1.53
PNKP-217ENST00000625216 CDC42SE1Q9NRR8 79 aa5.46□□□□□ -1.54
PNKP-217ENST00000625216 MUC12Q9UKN1 5478 aa5.44□□□□□ -1.54
PNKP-217ENST00000625216 NEBP20929 6669 aa5.41□□□□□ -1.54
PNKP-217ENST00000625216 BRK1Q8WUW1 75 aa5.41□□□□□ -1.54
PNKP-217ENST00000625216 KRTAP12-1P59990 96 aa5.39□□□□□ -1.55
PNKP-217ENST00000625216 KRTAP12-2P59991 146 aa5.37□□□□□ -1.55
PNKP-217ENST00000625216 PRO2289Q9P1D8 64 aa5.35□□□□□ -1.55
PNKP-217ENST00000625216 SPINT4Q6UDR6 99 aa5.34□□□□□ -1.55
PNKP-217ENST00000625216 PLAC4Q8WY50 150 aa5.34□□□□□ -1.55
PNKP-217ENST00000625216 KRTAP5-9P26371 169 aa5.33□□□□□ -1.56
PNKP-217ENST00000625216 KMT2DO14686 5537 aa5.33□□□□□ -1.56
PNKP-217ENST00000625216 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
PNKP-217ENST00000625216 MT1XP80297 61 aa5.27□□□□□ -1.57
PNKP-217ENST00000625216 K7ERS5 55 aa5.24□□□□□ -1.57
PNKP-217ENST00000625216 PRO0628Q9UI54 55 aa5.22□□□□□ -1.57
PNKP-217ENST00000625216 CAMK2N1Q7Z7J9 78 aa5.2□□□□□ -1.58
PNKP-217ENST00000625216 KRTAP20-1Q3LI63 56 aa5.19□□□□□ -1.58
PNKP-217ENST00000625216 SPRR2FQ96RM1 72 aa5.15□□□□□ -1.59
PNKP-217ENST00000625216 KRTAP8-1Q8IUC2 63 aa5.14□□□□□ -1.59
PNKP-217ENST00000625216 C10orf95Q9H7T3 257 aa5.11□□□□□ -1.59
PNKP-217ENST00000625216 KRTAP2-3P0C7H8 128 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 SPRR2EP22531 72 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 SPRR2BP35325 72 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 SPRR2AP35326 72 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 PMAIP1Q13794 54 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 KRTAP2-4Q9BYR9 128 aa5.08□□□□□ -1.6
PNKP-217ENST00000625216 ROMO1P60602 79 aa5.05□□□□□ -1.6
PNKP-217ENST00000625216 KRTAP4-8A0A0G2JLE6 195 aa5.04□□□□□ -1.6
PNKP-217ENST00000625216 KRTAP4-8Q9BYQ9 185 aa5.04□□□□□ -1.6
PNKP-217ENST00000625216 KRTAP10-12P60413 245 aa5.03□□□□□ -1.6
PNKP-217ENST00000625216 KRTAP10-7P60409 375 aaPredicted RBP5.02□□□□□ -1.61
PNKP-217ENST00000625216 LCE1AQ5T7P2 110 aa5.02□□□□□ -1.61
PNKP-217ENST00000625216 TNP1P09430 55 aa4.93□□□□□ -1.62
PNKP-217ENST00000625216 KRTAP25-1Q3LHN0 102 aa4.92□□□□□ -1.62
PNKP-217ENST00000625216 KRTAP2-2Q9BYT5 123 aa4.92□□□□□ -1.62
PNKP-217ENST00000625216 KRTAP2-1Q9BYU5 128 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms