RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 H7BZZ5 65 aa9.98□□□□□ -0.81
CLN3-212ENST00000564574 LCA10Q71F78 164 aa9.97□□□□□ -0.81
CLN3-212ENST00000564574 CYSTM1Q9H1C7 97 aa9.97□□□□□ -0.81
CLN3-212ENST00000564574 ACYP2P14621 99 aa9.96□□□□□ -0.82
CLN3-212ENST00000564574 KRTAP10-6P60371 365 aaPredicted RBP9.96□□□□□ -0.82
CLN3-212ENST00000564574 LORP23490 312 aaPredicted RBP9.91□□□□□ -0.82
CLN3-212ENST00000564574 CSAG1Q6PB30 78 aa9.9□□□□□ -0.82
CLN3-212ENST00000564574 KRTAP3-3Q9BYR6 98 aa9.89□□□□□ -0.83
CLN3-212ENST00000564574 CRCT1Q9UGL9 99 aa9.82□□□□□ -0.84
CLN3-212ENST00000564574 CHKB-CPT1BH3BT56 60 aa9.78□□□□□ -0.84
CLN3-212ENST00000564574 KRTAP9-8Q9BYQ0 159 aa9.78□□□□□ -0.84
CLN3-212ENST00000564574 FSIP2Q5CZC0 6907 aa9.77□□□□□ -0.84
CLN3-212ENST00000564574 ATP5EP56381 51 aaPredicted RBP9.77□□□□□ -0.85
CLN3-212ENST00000564574 TMEM258P61165 79 aa9.74□□□□□ -0.85
CLN3-212ENST00000564574 SPTSSBQ8NFR3 76 aa9.74□□□□□ -0.85
CLN3-212ENST00000564574 MT2AP02795 61 aa9.72□□□□□ -0.85
CLN3-212ENST00000564574 COA5Q86WW8 74 aa9.71□□□□□ -0.86
CLN3-212ENST00000564574 PCP4P48539 62 aa9.7□□□□□ -0.86
CLN3-212ENST00000564574 H0YAA0 97 aa9.66□□□□□ -0.86
CLN3-212ENST00000564574 MT1FP04733 61 aa9.63□□□□□ -0.87
CLN3-212ENST00000564574 KRTAP10-10P60014 251 aa9.63□□□□□ -0.87
CLN3-212ENST00000564574 ADM2Q7Z4H4 148 aa9.52□□□□□ -0.89
CLN3-212ENST00000564574 KRTAP9-3Q9BYQ3 159 aa9.46□□□□□ -0.9
CLN3-212ENST00000564574 CRIPTQ9P021 101 aa9.44□□□□□ -0.9
CLN3-212ENST00000564574 SERP1Q9Y6X1 66 aa9.42□□□□□ -0.9
CLN3-212ENST00000564574 KRTAP3-2Q9BYR7 98 aa9.41□□□□□ -0.9
CLN3-212ENST00000564574 P0C880 135 aa9.37□□□□□ -0.91
CLN3-212ENST00000564574 SEC61GP60059 68 aa9.33□□□□□ -0.92
CLN3-212ENST00000564574 SPRR2GQ9BYE4 73 aa9.3□□□□□ -0.92
CLN3-212ENST00000564574 KRTAP19-1Q8IUB9 90 aa9.29□□□□□ -0.92
CLN3-212ENST00000564574 LCE2BO14633 110 aa9.26□□□□□ -0.93
CLN3-212ENST00000564574 R4GN34 69 aa9.25□□□□□ -0.93
CLN3-212ENST00000564574 USH2AO75445 5202 aa9.24□□□□□ -0.93
CLN3-212ENST00000564574 A0A1B0GU69 56 aa9.21□□□□□ -0.94
CLN3-212ENST00000564574 LINC01558Q9Y6Z2 57 aa9.21□□□□□ -0.94
CLN3-212ENST00000564574 SSPOA2VEC9 5147 aa9.21□□□□□ -0.94
CLN3-212ENST00000564574 M0QZ58 72 aa9.19□□□□□ -0.94
CLN3-212ENST00000564574 RPS28P62857 69 aaKnown RBP9.19□□□□□ -0.94
CLN3-212ENST00000564574 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.16□□□□□ -0.94
CLN3-212ENST00000564574 PRR15LQ9BU68 103 aa9.16□□□□□ -0.94
CLN3-212ENST00000564574 KRTAP19-8Q3LI54 63 aa9.14□□□□□ -0.95
CLN3-212ENST00000564574 KRTAP9-7A8MTY7 169 aa9.11□□□□□ -0.95
CLN3-212ENST00000564574 SMIM26A0A096LP01 95 aa9.1□□□□□ -0.95
CLN3-212ENST00000564574 V9GYY9 64 aa9.1□□□□□ -0.95
CLN3-212ENST00000564574 A0A1B0GU33 70 aa9.09□□□□□ -0.95
CLN3-212ENST00000564574 Q5VV11 94 aa9.09□□□□□ -0.95
CLN3-212ENST00000564574 Q1T7F1 81 aa9.05□□□□□ -0.96
CLN3-212ENST00000564574 FCGBPQ9Y6R7 5405 aaPredicted RBP9.03□□□□□ -0.96
CLN3-212ENST00000564574 MT1BP07438 61 aa9.02□□□□□ -0.97
CLN3-212ENST00000564574 KRTAP13-4Q3LI77 160 aa9.01□□□□□ -0.97
CLN3-212ENST00000564574 LINC01554Q52M75 96 aa8.99□□□□□ -0.97
CLN3-212ENST00000564574 SPATA8Q6RVD6 105 aa8.92□□□□□ -0.98
CLN3-212ENST00000564574 A6NN06 94 aa8.91□□□□□ -0.98
CLN3-212ENST00000564574 PLAC4Q8WY50 150 aa8.91□□□□□ -0.98
CLN3-212ENST00000564574 PSPHP1O15172 72 aa8.87□□□□□ -0.99
CLN3-212ENST00000564574 KRTAP19-6Q3LI70 58 aa8.87□□□□□ -0.99
CLN3-212ENST00000564574 UQCR11O14957 56 aa8.86□□□□□ -0.99
CLN3-212ENST00000564574 A0A0D9SG42 100 aa8.8□□□□□ -1
CLN3-212ENST00000564574 MACF1Q9UPN3 7388 aaKnown RBP8.74□□□□□ -1.01
CLN3-212ENST00000564574 A8MU10 97 aa8.71□□□□□ -1.02
CLN3-212ENST00000564574 KRTAP10-5P60370 271 aa8.71□□□□□ -1.02
CLN3-212ENST00000564574 MIR22HGQ0VDD5 57 aa8.7□□□□□ -1.02
CLN3-212ENST00000564574 SYNE2Q8WXH0 6885 aaKnown RBP8.67□□□□□ -1.02
CLN3-212ENST00000564574 KRTAP12-1P59990 96 aa8.66□□□□□ -1.02
CLN3-212ENST00000564574 SPINT4Q6UDR6 99 aa8.66□□□□□ -1.02
CLN3-212ENST00000564574 PRO2289Q9P1D8 64 aa8.66□□□□□ -1.02
CLN3-212ENST00000564574 A6NED7 52 aa8.64□□□□□ -1.03
CLN3-212ENST00000564574 MT1XP80297 61 aa8.62□□□□□ -1.03
CLN3-212ENST00000564574 KRTAP12-2P59991 146 aa8.6□□□□□ -1.03
CLN3-212ENST00000564574 CAMK2N1Q7Z7J9 78 aa8.6□□□□□ -1.03
CLN3-212ENST00000564574 KRTAP6-3Q3LI67 103 aa8.49□□□□□ -1.05
CLN3-212ENST00000564574 K7ERS5 55 aa8.45□□□□□ -1.06
CLN3-212ENST00000564574 CDC42SE1Q9NRR8 79 aa8.43□□□□□ -1.06
CLN3-212ENST00000564574 KRTAP10-7P60409 375 aaPredicted RBP8.23□□□□□ -1.09
CLN3-212ENST00000564574 C10orf95Q9H7T3 257 aa8.22□□□□□ -1.09
CLN3-212ENST00000564574 KRTAP10-12P60413 245 aa8.21□□□□□ -1.1
CLN3-212ENST00000564574 NEBP20929 6669 aa8.19□□□□□ -1.1
CLN3-212ENST00000564574 MUC12Q9UKN1 5478 aa8.16□□□□□ -1.1
CLN3-212ENST00000564574 BRK1Q8WUW1 75 aa8.14□□□□□ -1.11
CLN3-212ENST00000564574 TNP1P09430 55 aa8.11□□□□□ -1.11
CLN3-212ENST00000564574 KMT2DO14686 5537 aa8.02□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP4-8A0A0G2JLE6 195 aa8.01□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP5-9P26371 169 aa8.01□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP4-8Q9BYQ9 185 aa8.01□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP8-1Q8IUC2 63 aa8□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP25-1Q3LHN0 102 aa7.99□□□□□ -1.13
CLN3-212ENST00000564574 ROMO1P60602 79 aa7.97□□□□□ -1.13
CLN3-212ENST00000564574 KRTAP20-1Q3LI63 56 aa7.97□□□□□ -1.13
CLN3-212ENST00000564574 MDN1Q9NU22 5596 aa7.92□□□□□ -1.14
CLN3-212ENST00000564574 LCE3AQ5TA76 89 aa7.81□□□□□ -1.16
CLN3-212ENST00000564574 SPRR2FQ96RM1 72 aa7.8□□□□□ -1.16
CLN3-212ENST00000564574 KRTAP23-1A1A580 65 aa7.75□□□□□ -1.17
CLN3-212ENST00000564574 PRO0628Q9UI54 55 aa7.73□□□□□ -1.17
CLN3-212ENST00000564574 KRTAP2-3P0C7H8 128 aa7.7□□□□□ -1.18
CLN3-212ENST00000564574 PMAIP1Q13794 54 aa7.7□□□□□ -1.18
CLN3-212ENST00000564574 KRTAP2-4Q9BYR9 128 aa7.7□□□□□ -1.18
CLN3-212ENST00000564574 KRTAP19-7Q3SYF9 63 aa7.69□□□□□ -1.18
CLN3-212ENST00000564574 SPRR2EP22531 72 aa7.68□□□□□ -1.18
CLN3-212ENST00000564574 SPRR2BP35325 72 aa7.68□□□□□ -1.18
CLN3-212ENST00000564574 SPRR2AP35326 72 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms