RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 UQCRQO14949 82 aa2.84□□□□□ -1.95
LDLR-209ENST00000558528 SERP2Q8N6R1 65 aa2.84□□□□□ -1.95
LDLR-209ENST00000558528 Q8N9L7 120 aa2.84□□□□□ -1.95
LDLR-209ENST00000558528 MMP24-AS1A0A0U1RRL7 71 aa2.83□□□□□ -1.96
LDLR-209ENST00000558528 H3BPC8 53 aa2.83□□□□□ -1.96
LDLR-209ENST00000558528 MT1HL1P0DM35 61 aa2.83□□□□□ -1.96
LDLR-209ENST00000558528 SPINT4Q6UDR6 99 aa2.83□□□□□ -1.96
LDLR-209ENST00000558528 WFDC13Q8IUB5 93 aa2.83□□□□□ -1.96
LDLR-209ENST00000558528 COX7CP15954 63 aa2.82□□□□□ -1.96
LDLR-209ENST00000558528 KRTAP4-8A0A0G2JLE6 195 aa2.81□□□□□ -1.96
LDLR-209ENST00000558528 ADM2Q7Z4H4 148 aa2.81□□□□□ -1.96
LDLR-209ENST00000558528 NDUFC1O43677 76 aa2.79□□□□□ -1.96
LDLR-209ENST00000558528 TRAV22A0A0B4J277 110 aa2.78□□□□□ -1.96
LDLR-209ENST00000558528 RPS28P62857 69 aaKnown RBP2.78□□□□□ -1.96
LDLR-209ENST00000558528 A8MU10 97 aa2.77□□□□□ -1.97
LDLR-209ENST00000558528 TPRXLQ17RH7 258 aa2.77□□□□□ -1.97
LDLR-209ENST00000558528 LCA10Q71F78 164 aa2.77□□□□□ -1.97
LDLR-209ENST00000558528 C20orf166-AS1Q96NR2 134 aa2.77□□□□□ -1.97
LDLR-209ENST00000558528 RETNLBQ9BQ08 111 aa2.77□□□□□ -1.97
LDLR-209ENST00000558528 A0A1B0GU33 70 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 LOC101927531A0A1B0GV80 90 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 H0Y9P7 68 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 KLKP1Q107X0 134 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 ATP11AUNQ6ZP68 121 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 KRTAP4-9Q9BYQ8 210 aa2.76□□□□□ -1.97
LDLR-209ENST00000558528 C9orf92A6NGG3 77 aa2.75□□□□□ -1.97
LDLR-209ENST00000558528 KTN1-AS1Q86SY8 53 aa2.75□□□□□ -1.97
LDLR-209ENST00000558528 C20orf197Q8N268 126 aa2.75□□□□□ -1.97
LDLR-209ENST00000558528 ZCCHC13Q8WW36 166 aaKnown RBP2.75□□□□□ -1.97
LDLR-209ENST00000558528 KRTAP13-3Q3SY46 172 aa2.74□□□□□ -1.97
LDLR-209ENST00000558528 C1orf64Q8NEQ6 169 aa2.74□□□□□ -1.97
LDLR-209ENST00000558528 LINC00208Q96KT6 92 aa2.74□□□□□ -1.97
LDLR-209ENST00000558528 RPL37P61927 97 aaKnown RBP2.73□□□□□ -1.97
LDLR-209ENST00000558528 KRTAP4-11Q9BYQ6 195 aa2.73□□□□□ -1.97
LDLR-209ENST00000558528 CCDC179H3BU77 68 aa2.72□□□□□ -1.97
LDLR-209ENST00000558528 ATP5EP56381 51 aaPredicted RBP2.72□□□□□ -1.97
LDLR-209ENST00000558528 C7orf65Q6ZTY9 151 aa2.72□□□□□ -1.97
LDLR-209ENST00000558528 TMEM258P61165 79 aa2.71□□□□□ -1.98
LDLR-209ENST00000558528 LINC01554Q52M75 96 aa2.71□□□□□ -1.98
LDLR-209ENST00000558528 SNURFQ9Y675 71 aa2.71□□□□□ -1.98
LDLR-209ENST00000558528 SSPOA2VEC9 5147 aa2.7□□□□□ -1.98
LDLR-209ENST00000558528 CYP4F30PQ9H0H9 118 aa2.7□□□□□ -1.98
LDLR-209ENST00000558528 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
LDLR-209ENST00000558528 KRTAP4-7Q9BYR0 210 aa2.69□□□□□ -1.98
LDLR-209ENST00000558528 KRTAP2-2Q9BYT5 123 aa2.69□□□□□ -1.98
LDLR-209ENST00000558528 H7BZZ5 65 aa2.68□□□□□ -1.98
LDLR-209ENST00000558528 KRTAP25-1Q3LHN0 102 aa2.68□□□□□ -1.98
LDLR-209ENST00000558528 KRTAP9-8Q9BYQ0 159 aa2.68□□□□□ -1.98
LDLR-209ENST00000558528 MUC17Q685J3 4493 aa2.67□□□□□ -1.98
LDLR-209ENST00000558528 SPINK7P58062 85 aa2.67□□□□□ -1.98
LDLR-209ENST00000558528 R4GN34 69 aa2.67□□□□□ -1.98
LDLR-209ENST00000558528 ACYP2P14621 99 aa2.66□□□□□ -1.98
LDLR-209ENST00000558528 PCOTHQ58A44 107 aa2.66□□□□□ -1.98
LDLR-209ENST00000558528 HRES1P13985 223 aa2.64□□□□□ -1.99
LDLR-209ENST00000558528 SYNE2Q8WXH0 6885 aaKnown RBP2.62□□□□□ -1.99
LDLR-209ENST00000558528 COX6B2Q6YFQ2 88 aa2.62□□□□□ -1.99
LDLR-209ENST00000558528 SPTSSBQ8NFR3 76 aa2.62□□□□□ -1.99
LDLR-209ENST00000558528 CYSTM1Q9H1C7 97 aa2.62□□□□□ -1.99
LDLR-209ENST00000558528 SERP1Q9Y6X1 66 aa2.62□□□□□ -1.99
LDLR-209ENST00000558528 CHKB-CPT1BH3BT56 60 aa2.61□□□□□ -1.99
LDLR-209ENST00000558528 DMAC1Q96GE9 116 aa2.61□□□□□ -1.99
LDLR-209ENST00000558528 USH2AO75445 5202 aa2.61□□□□□ -1.99
LDLR-209ENST00000558528 MACF1Q9UPN3 7388 aaKnown RBP2.6□□□□□ -1.99
LDLR-209ENST00000558528 FCGBPQ9Y6R7 5405 aaPredicted RBP2.6□□□□□ -1.99
LDLR-209ENST00000558528 H1FX-AS1Q4G0G2 97 aa2.57□□□□□ -2
LDLR-209ENST00000558528 COA5Q86WW8 74 aa2.57□□□□□ -2
LDLR-209ENST00000558528 BRK1Q8WUW1 75 aa2.56□□□□□ -2
LDLR-209ENST00000558528 NEBP20929 6669 aa2.56□□□□□ -2
LDLR-209ENST00000558528 KRTAP10-12P60413 245 aa2.55□□□□□ -2
LDLR-209ENST00000558528 PRR15LQ9BU68 103 aa2.53□□□□□ -2
LDLR-209ENST00000558528 S4R3F8 94 aa2.53□□□□□ -2
LDLR-209ENST00000558528 CSAG1Q6PB30 78 aa2.52□□□□□ -2.01
LDLR-209ENST00000558528 KRTAP4-2Q9BYR5 136 aa2.52□□□□□ -2.01
LDLR-209ENST00000558528 Q1T7F1 81 aa2.51□□□□□ -2.01
LDLR-209ENST00000558528 PRO2289Q9P1D8 64 aa2.51□□□□□ -2.01
LDLR-209ENST00000558528 LINC01558Q9Y6Z2 57 aa2.5□□□□□ -2.01
LDLR-209ENST00000558528 A0A1B0GU69 56 aa2.48□□□□□ -2.01
LDLR-209ENST00000558528 KRTAP20-1Q3LI63 56 aa2.48□□□□□ -2.01
LDLR-209ENST00000558528 KRTAP4-1Q9BYQ7 146 aa2.48□□□□□ -2.01
LDLR-209ENST00000558528 KRTAP6-3Q3LI67 103 aa2.47□□□□□ -2.01
LDLR-209ENST00000558528 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
LDLR-209ENST00000558528 KRTAP10-6P60371 365 aaPredicted RBP2.46□□□□□ -2.02
LDLR-209ENST00000558528 H0YAA0 97 aa2.45□□□□□ -2.02
LDLR-209ENST00000558528 MT1HP80294 61 aa2.44□□□□□ -2.02
LDLR-209ENST00000558528 MUC12Q9UKN1 5478 aa2.43□□□□□ -2.02
LDLR-209ENST00000558528 M0R2T5 61 aa2.43□□□□□ -2.02
LDLR-209ENST00000558528 ROMO1P60602 79 aa2.43□□□□□ -2.02
LDLR-209ENST00000558528 KRTAP19-2Q3LHN2 52 aa2.43□□□□□ -2.02
LDLR-209ENST00000558528 UQCR11O14957 56 aa2.42□□□□□ -2.02
LDLR-209ENST00000558528 GPR98Q8WXG9 6306 aa2.41□□□□□ -2.02
LDLR-209ENST00000558528 CRIPTQ9P021 101 aa2.4□□□□□ -2.03
LDLR-209ENST00000558528 FLGP20930 4061 aaPredicted RBP2.4□□□□□ -2.03
LDLR-209ENST00000558528 M0QZ58 72 aa2.39□□□□□ -2.03
LDLR-209ENST00000558528 Q5VV11 94 aa2.39□□□□□ -2.03
LDLR-209ENST00000558528 SPRR5A0A1B0GTR4 108 aa2.38□□□□□ -2.03
LDLR-209ENST00000558528 P0C880 135 aa2.37□□□□□ -2.03
LDLR-209ENST00000558528 MIR22HGQ0VDD5 57 aa2.37□□□□□ -2.03
LDLR-209ENST00000558528 KMT2DO14686 5537 aa2.36□□□□□ -2.03
LDLR-209ENST00000558528 SPATA8Q6RVD6 105 aa2.35□□□□□ -2.03
LDLR-209ENST00000558528 CDC42SE1Q9NRR8 79 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 222.7 ms