RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CHIC1Q5VXU3 224 aa14.46□□□□□ -0.09
LDLR-209ENST00000558528 AEBP2Q6ZN18 517 aaPredicted RBP13.89□□□□□ -0.19
LDLR-209ENST00000558528 PHF23Q9BUL5 403 aaPredicted RBP12.69□□□□□ -0.38
LDLR-209ENST00000558528 PLPPR3Q6T4P5 718 aa12.15□□□□□ -0.46
LDLR-209ENST00000558528 SENP3Q9H4L4 574 aaPredicted RBP11.85□□□□□ -0.51
LDLR-209ENST00000558528 EHMT2Q96KQ7 1210 aa11.49□□□□□ -0.57
LDLR-209ENST00000558528 KCNA4P22459 653 aa11.32□□□□□ -0.6
LDLR-209ENST00000558528 NISCHQ9Y2I1 1504 aa11.25□□□□□ -0.61
LDLR-209ENST00000558528 ADRA2BP18089 450 aa11.15□□□□□ -0.62
LDLR-209ENST00000558528 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
LDLR-209ENST00000558528 SLC4A1APQ9BWU0 796 aaKnown RBP10.99□□□□□ -0.65
LDLR-209ENST00000558528 PPP6R1Q9UPN7 881 aa10.9□□□□□ -0.66
LDLR-209ENST00000558528 NCBP3Q53F19 620 aaKnown RBP10.8□□□□□ -0.68
LDLR-209ENST00000558528 FOXD1Q16676 465 aa10.77□□□□□ -0.69
LDLR-209ENST00000558528 SLC24A1O60721 1099 aa10.76□□□□□ -0.69
LDLR-209ENST00000558528 PPP4R3CPQ6ZMV5 832 aa10.73□□□□□ -0.69
LDLR-209ENST00000558528 ABCC9O60706 1549 aa10.63□□□□□ -0.71
LDLR-209ENST00000558528 DNAJC5BQ9UF47 199 aa10.62□□□□□ -0.71
LDLR-209ENST00000558528 AMER1Q5JTC6 1135 aaPredicted RBP10.55□□□□□ -0.72
LDLR-209ENST00000558528 NPM3O75607 178 aaKnown RBP10.51□□□□□ -0.73
LDLR-209ENST00000558528 PIAS4Q8N2W9 510 aaPredicted RBP10.4□□□□□ -0.74
LDLR-209ENST00000558528 RTN4Q9NQC3 1192 aaKnown RBP10.39□□□□□ -0.75
LDLR-209ENST00000558528 ZBTB22O15209 634 aa10.38□□□□□ -0.75
LDLR-209ENST00000558528 CNKSR2Q8WXI2 1034 aa10.32□□□□□ -0.76
LDLR-209ENST00000558528 FOXD4L1Q9NU39 408 aa10.29□□□□□ -0.76
LDLR-209ENST00000558528 DNAJC5Q9H3Z4 198 aa10.25□□□□□ -0.77
LDLR-209ENST00000558528 SCAF1Q9H7N4 1312 aaKnown RBP10.25□□□□□ -0.77
LDLR-209ENST00000558528 CCDC180Q9P1Z9 1646 aa10.04□□□□□ -0.8
LDLR-209ENST00000558528 ATXN8OSP0DMR3 200 aa9.94□□□□□ -0.82
LDLR-209ENST00000558528 FKBP8Q14318 412 aa9.93□□□□□ -0.82
LDLR-209ENST00000558528 RNF216Q9NWF9 866 aaPredicted RBP9.93□□□□□ -0.82
LDLR-209ENST00000558528 RB1CC1Q8TDY2 1594 aa9.86□□□□□ -0.83
LDLR-209ENST00000558528 MSH5O43196 834 aa9.78□□□□□ -0.84
LDLR-209ENST00000558528 MYCNP04198 464 aaPredicted RBP9.78□□□□□ -0.84
LDLR-209ENST00000558528 PABPN1Q86U42 306 aaKnown RBP eCLIP9.77□□□□□ -0.85
LDLR-209ENST00000558528 SLC4A2P04920 1241 aa9.69□□□□□ -0.86
LDLR-209ENST00000558528 CECR2Q9BXF3 1484 aa9.67□□□□□ -0.86
LDLR-209ENST00000558528 MAPK8IP2Q13387 824 aaPredicted RBP9.67□□□□□ -0.86
LDLR-209ENST00000558528 HOXD11P31277 338 aaPredicted RBP9.66□□□□□ -0.86
LDLR-209ENST00000558528 NACADO15069 1562 aa9.65□□□□□ -0.86
LDLR-209ENST00000558528 BICRAQ9NZM4 1560 aa9.64□□□□□ -0.87
LDLR-209ENST00000558528 UNC13AQ9UPW8 1703 aa9.64□□□□□ -0.87
LDLR-209ENST00000558528 PLCB2Q00722 1185 aa9.62□□□□□ -0.87
LDLR-209ENST00000558528 CC2D2AQ9P2K1 1620 aa9.6□□□□□ -0.87
LDLR-209ENST00000558528 BCANQ96GW7 911 aa9.56□□□□□ -0.88
LDLR-209ENST00000558528 DMRT2Q9Y5R5 561 aa9.55□□□□□ -0.88
LDLR-209ENST00000558528 FBXO3Q9UK99 471 aa9.52□□□□□ -0.89
LDLR-209ENST00000558528 CUX2O14529 1486 aa9.49□□□□□ -0.89
LDLR-209ENST00000558528 SHROOM4Q9ULL8 1493 aa9.47□□□□□ -0.89
LDLR-209ENST00000558528 HAP1P54257 671 aaPredicted RBP9.45□□□□□ -0.9
LDLR-209ENST00000558528 EIF4G1Q04637 1599 aaKnown RBP9.43□□□□□ -0.9
LDLR-209ENST00000558528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.43□□□□□ -0.9
LDLR-209ENST00000558528 HNRNPUL2Q1KMD3 747 aaKnown RBP9.43□□□□□ -0.9
LDLR-209ENST00000558528 TRIM41Q8WV44 630 aa9.43□□□□□ -0.9
LDLR-209ENST00000558528 ZCCHC6Q5VYS8 1495 aaKnown RBP9.42□□□□□ -0.9
LDLR-209ENST00000558528 VSIG10Q8N0Z9 540 aa9.42□□□□□ -0.9
LDLR-209ENST00000558528 DCAF8L2P0C7V8 631 aa9.4□□□□□ -0.9
LDLR-209ENST00000558528 SAMD1Q6SPF0 538 aaPredicted RBP9.39□□□□□ -0.91
LDLR-209ENST00000558528 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
LDLR-209ENST00000558528 DCAF1Q9Y4B6 1507 aa9.37□□□□□ -0.91
LDLR-209ENST00000558528 MYO15BQ96JP2 1530 aa9.34□□□□□ -0.91
LDLR-209ENST00000558528 PRKCSHP14314 528 aaPredicted RBP9.28□□□□□ -0.92
LDLR-209ENST00000558528 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
LDLR-209ENST00000558528 VASPP50552 380 aaPredicted RBP9.26□□□□□ -0.93
LDLR-209ENST00000558528 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.23□□□□□ -0.93
LDLR-209ENST00000558528 SPDYE4A6NLX3 237 aa9.22□□□□□ -0.93
LDLR-209ENST00000558528 ERCC6Q03468 1493 aa9.21□□□□□ -0.93
LDLR-209ENST00000558528 TPRNQ4KMQ1 711 aa9.2□□□□□ -0.94
LDLR-209ENST00000558528 PROM2Q8N271 834 aa9.2□□□□□ -0.94
LDLR-209ENST00000558528 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.2□□□□□ -0.94
LDLR-209ENST00000558528 APLP2Q06481 763 aa9.19□□□□□ -0.94
LDLR-209ENST00000558528 BBXQ8WY36 941 aaPredicted RBP9.16□□□□□ -0.94
LDLR-209ENST00000558528 ZNF219Q9P2Y4 722 aaPredicted RBP9.16□□□□□ -0.94
LDLR-209ENST00000558528 PKD2Q13563 968 aa9.13□□□□□ -0.95
LDLR-209ENST00000558528 IFNLR1Q8IU57 520 aaPredicted RBP9.13□□□□□ -0.95
LDLR-209ENST00000558528 ERICH6Q7L0X2 663 aa9.09□□□□□ -0.95
LDLR-209ENST00000558528 U3KPZ7 1027 aaPredicted RBP9.09□□□□□ -0.95
LDLR-209ENST00000558528 SCRIBQ14160 1630 aa9.07□□□□□ -0.96
LDLR-209ENST00000558528 KDM2AQ9Y2K7 1162 aa9.07□□□□□ -0.96
LDLR-209ENST00000558528 THOC2Q8NI27 1593 aaKnown RBP9.04□□□□□ -0.96
LDLR-209ENST00000558528 FBLN2P98095 1184 aa9.04□□□□□ -0.96
LDLR-209ENST00000558528 PAXIP1Q6ZW49 1069 aaPredicted RBP9.04□□□□□ -0.96
LDLR-209ENST00000558528 DCAF8L1A6NGE4 600 aa9.03□□□□□ -0.96
LDLR-209ENST00000558528 CFAP44Q96MT7 982 aa9□□□□□ -0.97
LDLR-209ENST00000558528 SPRYD3Q8NCJ5 442 aa8.99□□□□□ -0.97
LDLR-209ENST00000558528 SPOCK2Q92563 424 aa8.99□□□□□ -0.97
LDLR-209ENST00000558528 ECM2O94769 699 aaPredicted RBP8.98□□□□□ -0.97
LDLR-209ENST00000558528 ARXQ96QS3 562 aa8.97□□□□□ -0.97
LDLR-209ENST00000558528 NESP48681 1621 aa8.96□□□□□ -0.98
LDLR-209ENST00000558528 MKRN4PQ13434 485 aaPredicted RBP8.96□□□□□ -0.98
LDLR-209ENST00000558528 NBR1Q14596 966 aa8.96□□□□□ -0.98
LDLR-209ENST00000558528 DAXXQ9UER7 740 aaPredicted RBP8.93□□□□□ -0.98
LDLR-209ENST00000558528 NCAPD3P42695 1498 aa8.93□□□□□ -0.98
LDLR-209ENST00000558528 KLHL34Q8N239 644 aa8.92□□□□□ -0.98
LDLR-209ENST00000558528 BAZ1AQ9NRL2 1556 aaPredicted RBP8.91□□□□□ -0.98
LDLR-209ENST00000558528 NPM1P06748 294 aaKnown RBP eCLIP8.91□□□□□ -0.98
LDLR-209ENST00000558528 OSCARQ8IYS5 282 aa8.9□□□□□ -0.98
LDLR-209ENST00000558528 TIMELESSQ9UNS1 1208 aa8.89□□□□□ -0.99
LDLR-209ENST00000558528 RIMBP3CA6NJZ7 1639 aa8.88□□□□□ -0.99
LDLR-209ENST00000558528 RIMBP3BA6NNM3 1639 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms