RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CYSTM1Q9H1C7 97 aa5.59□□□□□ -1.51
SHMT2-220ENST00000555634 M0R2T5 61 aa5.58□□□□□ -1.52
SHMT2-220ENST00000555634 SPTSSBQ8NFR3 76 aa5.58□□□□□ -1.52
SHMT2-220ENST00000555634 KRTAP19-2Q3LHN2 52 aa5.53□□□□□ -1.52
SHMT2-220ENST00000555634 KRTAP3-1Q9BYR8 98 aa5.53□□□□□ -1.52
SHMT2-220ENST00000555634 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
SHMT2-220ENST00000555634 LCA10Q71F78 164 aa5.51□□□□□ -1.53
SHMT2-220ENST00000555634 CSAG1Q6PB30 78 aa5.5□□□□□ -1.53
SHMT2-220ENST00000555634 COA5Q86WW8 74 aa5.5□□□□□ -1.53
SHMT2-220ENST00000555634 LCE2CQ5TA81 110 aa5.49□□□□□ -1.53
SHMT2-220ENST00000555634 MT1HP80294 61 aa5.48□□□□□ -1.53
SHMT2-220ENST00000555634 KRTAP9-7A8MTY7 169 aa5.42□□□□□ -1.54
SHMT2-220ENST00000555634 SERP1Q9Y6X1 66 aa5.42□□□□□ -1.54
SHMT2-220ENST00000555634 LCE2DQ5TA82 110 aaPredicted RBP5.4□□□□□ -1.54
SHMT2-220ENST00000555634 SEC61GP60059 68 aa5.38□□□□□ -1.55
SHMT2-220ENST00000555634 KRTAP3-3Q9BYR6 98 aa5.36□□□□□ -1.55
SHMT2-220ENST00000555634 H0YAA0 97 aa5.33□□□□□ -1.56
SHMT2-220ENST00000555634 KRTAP10-6P60371 365 aaPredicted RBP5.32□□□□□ -1.56
SHMT2-220ENST00000555634 PRR15LQ9BU68 103 aa5.31□□□□□ -1.56
SHMT2-220ENST00000555634 FLGP20930 4061 aaPredicted RBP5.31□□□□□ -1.56
SHMT2-220ENST00000555634 ADM2Q7Z4H4 148 aa5.29□□□□□ -1.56
SHMT2-220ENST00000555634 V9GYY9 64 aa5.29□□□□□ -1.56
SHMT2-220ENST00000555634 RPS28P62857 69 aaKnown RBP5.28□□□□□ -1.56
SHMT2-220ENST00000555634 A0A1B0GU69 56 aa5.27□□□□□ -1.57
SHMT2-220ENST00000555634 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.27□□□□□ -1.57
SHMT2-220ENST00000555634 LORP23490 312 aaPredicted RBP5.27□□□□□ -1.57
SHMT2-220ENST00000555634 SMIM26A0A096LP01 95 aa5.26□□□□□ -1.57
SHMT2-220ENST00000555634 KRTAP10-10P60014 251 aa5.25□□□□□ -1.57
SHMT2-220ENST00000555634 CRIPTQ9P021 101 aa5.23□□□□□ -1.57
SHMT2-220ENST00000555634 MT2AP02795 61 aa5.21□□□□□ -1.58
SHMT2-220ENST00000555634 LINC01558Q9Y6Z2 57 aa5.2□□□□□ -1.58
SHMT2-220ENST00000555634 KRTAP9-8Q9BYQ0 159 aa5.19□□□□□ -1.58
SHMT2-220ENST00000555634 R4GN34 69 aa5.19□□□□□ -1.58
SHMT2-220ENST00000555634 MT1FP04733 61 aa5.16□□□□□ -1.58
SHMT2-220ENST00000555634 Q1T7F1 81 aa5.16□□□□□ -1.58
SHMT2-220ENST00000555634 P0C880 135 aa5.15□□□□□ -1.59
SHMT2-220ENST00000555634 A0A1B0GU33 70 aa5.13□□□□□ -1.59
SHMT2-220ENST00000555634 M0QZ58 72 aa5.13□□□□□ -1.59
SHMT2-220ENST00000555634 KRTAP3-2Q9BYR7 98 aa5.12□□□□□ -1.59
SHMT2-220ENST00000555634 PSPHP1O15172 72 aa5.09□□□□□ -1.59
SHMT2-220ENST00000555634 SYNE2Q8WXH0 6885 aaKnown RBP5.08□□□□□ -1.6
SHMT2-220ENST00000555634 UQCR11O14957 56 aa5.07□□□□□ -1.6
SHMT2-220ENST00000555634 LINC01554Q52M75 96 aa5.05□□□□□ -1.6
SHMT2-220ENST00000555634 Q5VV11 94 aa5.05□□□□□ -1.6
SHMT2-220ENST00000555634 SPRR2GQ9BYE4 73 aa5.04□□□□□ -1.6
SHMT2-220ENST00000555634 A6NED7 52 aa5.02□□□□□ -1.61
SHMT2-220ENST00000555634 KRTAP9-3Q9BYQ3 159 aa5.02□□□□□ -1.61
SHMT2-220ENST00000555634 SPATA8Q6RVD6 105 aa4.98□□□□□ -1.61
SHMT2-220ENST00000555634 SSPOA2VEC9 5147 aa4.98□□□□□ -1.61
SHMT2-220ENST00000555634 MIR22HGQ0VDD5 57 aa4.97□□□□□ -1.61
SHMT2-220ENST00000555634 KRTAP19-1Q8IUB9 90 aa4.97□□□□□ -1.61
SHMT2-220ENST00000555634 FCGBPQ9Y6R7 5405 aaPredicted RBP4.96□□□□□ -1.62
SHMT2-220ENST00000555634 A0A0D9SG42 100 aa4.96□□□□□ -1.62
SHMT2-220ENST00000555634 PLAC4Q8WY50 150 aa4.96□□□□□ -1.62
SHMT2-220ENST00000555634 USH2AO75445 5202 aa4.96□□□□□ -1.62
SHMT2-220ENST00000555634 MACF1Q9UPN3 7388 aaKnown RBP4.95□□□□□ -1.62
SHMT2-220ENST00000555634 A6NN06 94 aa4.94□□□□□ -1.62
SHMT2-220ENST00000555634 KRTAP13-4Q3LI77 160 aa4.94□□□□□ -1.62
SHMT2-220ENST00000555634 K7ERS5 55 aa4.93□□□□□ -1.62
SHMT2-220ENST00000555634 KRTAP19-8Q3LI54 63 aa4.92□□□□□ -1.62
SHMT2-220ENST00000555634 LCE2BO14633 110 aa4.89□□□□□ -1.63
SHMT2-220ENST00000555634 SPINT4Q6UDR6 99 aa4.88□□□□□ -1.63
SHMT2-220ENST00000555634 A8MU10 97 aa4.87□□□□□ -1.63
SHMT2-220ENST00000555634 CAMK2N1Q7Z7J9 78 aa4.87□□□□□ -1.63
SHMT2-220ENST00000555634 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
SHMT2-220ENST00000555634 NEBP20929 6669 aa4.83□□□□□ -1.64
SHMT2-220ENST00000555634 PRO2289Q9P1D8 64 aa4.83□□□□□ -1.64
SHMT2-220ENST00000555634 MT1BP07438 61 aa4.82□□□□□ -1.64
SHMT2-220ENST00000555634 KRTAP12-1P59990 96 aa4.8□□□□□ -1.64
SHMT2-220ENST00000555634 BRK1Q8WUW1 75 aa4.8□□□□□ -1.64
SHMT2-220ENST00000555634 KRTAP12-2P59991 146 aa4.77□□□□□ -1.65
SHMT2-220ENST00000555634 KRTAP19-6Q3LI70 58 aa4.71□□□□□ -1.66
SHMT2-220ENST00000555634 KRTAP10-5P60370 271 aa4.68□□□□□ -1.66
SHMT2-220ENST00000555634 KRTAP20-1Q3LI63 56 aa4.67□□□□□ -1.66
SHMT2-220ENST00000555634 MUC12Q9UKN1 5478 aa4.66□□□□□ -1.66
SHMT2-220ENST00000555634 MT1XP80297 61 aa4.64□□□□□ -1.67
SHMT2-220ENST00000555634 KRTAP6-3Q3LI67 103 aa4.63□□□□□ -1.67
SHMT2-220ENST00000555634 TNP1P09430 55 aa4.57□□□□□ -1.68
SHMT2-220ENST00000555634 PRO0628Q9UI54 55 aa4.57□□□□□ -1.68
SHMT2-220ENST00000555634 ROMO1P60602 79 aa4.55□□□□□ -1.68
SHMT2-220ENST00000555634 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
SHMT2-220ENST00000555634 KRTAP25-1Q3LHN0 102 aa4.52□□□□□ -1.69
SHMT2-220ENST00000555634 C10orf95Q9H7T3 257 aa4.51□□□□□ -1.69
SHMT2-220ENST00000555634 GPR98Q8WXG9 6306 aa4.51□□□□□ -1.69
SHMT2-220ENST00000555634 KRTAP10-12P60413 245 aa4.47□□□□□ -1.69
SHMT2-220ENST00000555634 KMT2DO14686 5537 aa4.46□□□□□ -1.69
SHMT2-220ENST00000555634 MDN1Q9NU22 5596 aa4.44□□□□□ -1.7
SHMT2-220ENST00000555634 LOC100996750A0A140TA64 210 aa4.43□□□□□ -1.7
SHMT2-220ENST00000555634 KRTAP10-7P60409 375 aaPredicted RBP4.43□□□□□ -1.7
SHMT2-220ENST00000555634 KRTAP4-6Q9BYQ5 205 aa4.43□□□□□ -1.7
SHMT2-220ENST00000555634 KRTAP8-1Q8IUC2 63 aa4.37□□□□□ -1.71
SHMT2-220ENST00000555634 PP632Q6XCG6 107 aa4.36□□□□□ -1.71
SHMT2-220ENST00000555634 KRTAP23-1A1A580 65 aa4.34□□□□□ -1.71
SHMT2-220ENST00000555634 KRTAP2-3P0C7H8 128 aa4.32□□□□□ -1.72
SHMT2-220ENST00000555634 KRTAP2-4Q9BYR9 128 aa4.32□□□□□ -1.72
SHMT2-220ENST00000555634 LCE3AQ5TA76 89 aa4.3□□□□□ -1.72
SHMT2-220ENST00000555634 KTN1-AS1Q86SY8 53 aa4.29□□□□□ -1.72
SHMT2-220ENST00000555634 KRTAP4-8A0A0G2JLE6 195 aa4.26□□□□□ -1.73
SHMT2-220ENST00000555634 KRTAP4-8Q9BYQ9 185 aa4.26□□□□□ -1.73
SHMT2-220ENST00000555634 SPRR2FQ96RM1 72 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms