RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 IGKV2D-30A0A075B6S6 120 aa4.87□□□□□ -1.63
LIMA1-211ENST00000552338 KLKP1Q107X0 134 aa4.86□□□□□ -1.63
LIMA1-211ENST00000552338 LCE5AQ5TCM9 118 aa4.85□□□□□ -1.63
LIMA1-211ENST00000552338 RBM12B-AS1Q9P1G2 102 aa4.84□□□□□ -1.63
LIMA1-211ENST00000552338 MUC2Q02817 5179 aa4.84□□□□□ -1.63
LIMA1-211ENST00000552338 ANAPC13Q9BS18 74 aa4.83□□□□□ -1.64
LIMA1-211ENST00000552338 COX6B2Q6YFQ2 88 aa4.82□□□□□ -1.64
LIMA1-211ENST00000552338 C20orf197Q8N268 126 aa4.81□□□□□ -1.64
LIMA1-211ENST00000552338 KRTAP3-1Q9BYR8 98 aa4.8□□□□□ -1.64
LIMA1-211ENST00000552338 RNF213Q63HN8 5207 aa4.8□□□□□ -1.64
LIMA1-211ENST00000552338 NDUFC1O43677 76 aa4.78□□□□□ -1.64
LIMA1-211ENST00000552338 C4orf26Q17RF5 130 aa4.78□□□□□ -1.64
LIMA1-211ENST00000552338 SPANXA2-OT1Q8N9U9 137 aa4.78□□□□□ -1.64
LIMA1-211ENST00000552338 KRTAP9-3Q9BYQ3 159 aa4.78□□□□□ -1.64
LIMA1-211ENST00000552338 A8MUN3 132 aa4.77□□□□□ -1.65
LIMA1-211ENST00000552338 SNURFQ9Y675 71 aa4.77□□□□□ -1.65
LIMA1-211ENST00000552338 H1FX-AS1Q4G0G2 97 aa4.76□□□□□ -1.65
LIMA1-211ENST00000552338 H7BZZ5 65 aa4.74□□□□□ -1.65
LIMA1-211ENST00000552338 FLGP20930 4061 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-211ENST00000552338 CCDC179H3BU77 68 aa4.73□□□□□ -1.65
LIMA1-211ENST00000552338 DMAC1Q96GE9 116 aa4.73□□□□□ -1.65
LIMA1-211ENST00000552338 FAM236DA0A1B0GTK5 79 aa4.72□□□□□ -1.65
LIMA1-211ENST00000552338 FAM236CP0DP71 79 aa4.72□□□□□ -1.65
LIMA1-211ENST00000552338 MT1HP80294 61 aa4.72□□□□□ -1.65
LIMA1-211ENST00000552338 CYSTM1Q9H1C7 97 aa4.72□□□□□ -1.65
LIMA1-211ENST00000552338 FAT4Q6V0I7 4981 aa4.72□□□□□ -1.65
LIMA1-211ENST00000552338 KRTAP5-3Q6L8H2 238 aa4.69□□□□□ -1.66
LIMA1-211ENST00000552338 ACYP2P14621 99 aa4.67□□□□□ -1.66
LIMA1-211ENST00000552338 PCP4P48539 62 aa4.64□□□□□ -1.67
LIMA1-211ENST00000552338 ATP5EP56381 51 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-211ENST00000552338 LCA10Q71F78 164 aa4.63□□□□□ -1.67
LIMA1-211ENST00000552338 S4R3F8 94 aa4.63□□□□□ -1.67
LIMA1-211ENST00000552338 TMEM258P61165 79 aa4.62□□□□□ -1.67
LIMA1-211ENST00000552338 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
LIMA1-211ENST00000552338 KRTAP23-1A1A580 65 aa4.6□□□□□ -1.67
LIMA1-211ENST00000552338 CSAG1Q6PB30 78 aa4.59□□□□□ -1.67
LIMA1-211ENST00000552338 KRTAP10-6P60371 365 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-211ENST00000552338 M0R2T5 61 aa4.56□□□□□ -1.68
LIMA1-211ENST00000552338 H0YAA0 97 aa4.55□□□□□ -1.68
LIMA1-211ENST00000552338 COA5Q86WW8 74 aa4.55□□□□□ -1.68
LIMA1-211ENST00000552338 SPTSSBQ8NFR3 76 aa4.53□□□□□ -1.68
LIMA1-211ENST00000552338 CHKB-CPT1BH3BT56 60 aa4.5□□□□□ -1.69
LIMA1-211ENST00000552338 MT2AP02795 61 aa4.48□□□□□ -1.69
LIMA1-211ENST00000552338 SERP1Q9Y6X1 66 aa4.47□□□□□ -1.69
LIMA1-211ENST00000552338 MT1FP04733 61 aa4.44□□□□□ -1.7
LIMA1-211ENST00000552338 RPS28P62857 69 aaKnown RBP4.44□□□□□ -1.7
LIMA1-211ENST00000552338 CRIPTQ9P021 101 aa4.4□□□□□ -1.71
LIMA1-211ENST00000552338 KRTAP10-10P60014 251 aa4.39□□□□□ -1.71
LIMA1-211ENST00000552338 ADM2Q7Z4H4 148 aa4.38□□□□□ -1.71
LIMA1-211ENST00000552338 LINC01558Q9Y6Z2 57 aa4.37□□□□□ -1.71
LIMA1-211ENST00000552338 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
LIMA1-211ENST00000552338 P0C880 135 aa4.35□□□□□ -1.71
LIMA1-211ENST00000552338 SMIM26A0A096LP01 95 aa4.32□□□□□ -1.72
LIMA1-211ENST00000552338 SEC61GP60059 68 aa4.32□□□□□ -1.72
LIMA1-211ENST00000552338 Q1T7F1 81 aa4.32□□□□□ -1.72
LIMA1-211ENST00000552338 V9GYY9 64 aa4.31□□□□□ -1.72
LIMA1-211ENST00000552338 A0A1B0GU69 56 aa4.3□□□□□ -1.72
LIMA1-211ENST00000552338 M0QZ58 72 aa4.3□□□□□ -1.72
LIMA1-211ENST00000552338 KRTAP19-8Q3LI54 63 aa4.28□□□□□ -1.72
LIMA1-211ENST00000552338 PRR15LQ9BU68 103 aa4.27□□□□□ -1.73
LIMA1-211ENST00000552338 Q5VV11 94 aa4.26□□□□□ -1.73
LIMA1-211ENST00000552338 R4GN34 69 aa4.26□□□□□ -1.73
LIMA1-211ENST00000552338 A0A1B0GU33 70 aa4.24□□□□□ -1.73
LIMA1-211ENST00000552338 KRTAP13-4Q3LI77 160 aa4.22□□□□□ -1.73
LIMA1-211ENST00000552338 A6NN06 94 aa4.21□□□□□ -1.74
LIMA1-211ENST00000552338 MT1BP07438 61 aa4.2□□□□□ -1.74
LIMA1-211ENST00000552338 A0A0A0MQY5 61 aa4.19□□□□□ -1.74
LIMA1-211ENST00000552338 UQCR11O14957 56 aa4.17□□□□□ -1.74
LIMA1-211ENST00000552338 PSPHP1O15172 72 aa4.14□□□□□ -1.75
LIMA1-211ENST00000552338 SPATA8Q6RVD6 105 aa4.13□□□□□ -1.75
LIMA1-211ENST00000552338 KRTAP19-6Q3LI70 58 aa4.11□□□□□ -1.75
LIMA1-211ENST00000552338 LINC01554Q52M75 96 aa4.08□□□□□ -1.76
LIMA1-211ENST00000552338 PLAC4Q8WY50 150 aa4.08□□□□□ -1.76
LIMA1-211ENST00000552338 USH2AO75445 5202 aa4.07□□□□□ -1.76
LIMA1-211ENST00000552338 MIR22HGQ0VDD5 57 aa4.07□□□□□ -1.76
LIMA1-211ENST00000552338 KRTAP12-1P59990 96 aa4.06□□□□□ -1.76
LIMA1-211ENST00000552338 KRTAP15-1Q3LI76 137 aa4.06□□□□□ -1.76
LIMA1-211ENST00000552338 CRCT1Q9UGL9 99 aa4.06□□□□□ -1.76
LIMA1-211ENST00000552338 A8MU10 97 aa4.04□□□□□ -1.76
LIMA1-211ENST00000552338 KRTAP10-5P60370 271 aa4.04□□□□□ -1.76
LIMA1-211ENST00000552338 A0A0D9SG42 100 aa4.03□□□□□ -1.76
LIMA1-211ENST00000552338 A6NED7 52 aa4.03□□□□□ -1.76
LIMA1-211ENST00000552338 KRTAP12-2P59991 146 aa4.01□□□□□ -1.77
LIMA1-211ENST00000552338 MT1XP80297 61 aa4.01□□□□□ -1.77
LIMA1-211ENST00000552338 CDC42SE1Q9NRR8 79 aa4□□□□□ -1.77
LIMA1-211ENST00000552338 FSIP2Q5CZC0 6907 aa3.99□□□□□ -1.77
LIMA1-211ENST00000552338 SSPOA2VEC9 5147 aa3.99□□□□□ -1.77
LIMA1-211ENST00000552338 PRO2289Q9P1D8 64 aa3.98□□□□□ -1.77
LIMA1-211ENST00000552338 SPINT4Q6UDR6 99 aa3.97□□□□□ -1.77
LIMA1-211ENST00000552338 CAMK2N1Q7Z7J9 78 aa3.93□□□□□ -1.78
LIMA1-211ENST00000552338 K7ERS5 55 aa3.91□□□□□ -1.78
LIMA1-211ENST00000552338 FCGBPQ9Y6R7 5405 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-211ENST00000552338 KRTAP10-12P60413 245 aa3.85□□□□□ -1.79
LIMA1-211ENST00000552338 C10orf95Q9H7T3 257 aa3.85□□□□□ -1.79
LIMA1-211ENST00000552338 BRK1Q8WUW1 75 aa3.82□□□□□ -1.8
LIMA1-211ENST00000552338 KRTAP10-7P60409 375 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-211ENST00000552338 TNP1P09430 55 aa3.77□□□□□ -1.81
LIMA1-211ENST00000552338 KRTAP25-1Q3LHN0 102 aa3.75□□□□□ -1.81
LIMA1-211ENST00000552338 MACF1Q9UPN3 7388 aaKnown RBP3.74□□□□□ -1.81
LIMA1-211ENST00000552338 ROMO1P60602 79 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms