RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 KRTAP3-1Q9BYR8 98 aa7.71□□□□□ -1.17
ECHDC1-220ENST00000528402 KRTAP4-5Q9BYR2 181 aa7.69□□□□□ -1.18
ECHDC1-220ENST00000528402 LORP23490 312 aaPredicted RBP7.69□□□□□ -1.18
ECHDC1-220ENST00000528402 SEC61GP60059 68 aa7.67□□□□□ -1.18
ECHDC1-220ENST00000528402 CDC42SE1Q9NRR8 79 aa7.65□□□□□ -1.18
ECHDC1-220ENST00000528402 MYCBP2O75592 4640 aa7.61□□□□□ -1.19
ECHDC1-220ENST00000528402 LCA10Q71F78 164 aa7.59□□□□□ -1.19
ECHDC1-220ENST00000528402 UQCR11O14957 56 aa7.58□□□□□ -1.2
ECHDC1-220ENST00000528402 SEC61BP60468 96 aaKnown RBP7.55□□□□□ -1.2
ECHDC1-220ENST00000528402 RBM12B-AS1Q9P1G2 102 aa7.53□□□□□ -1.2
ECHDC1-220ENST00000528402 BIRC6Q9NR09 4857 aa7.53□□□□□ -1.2
ECHDC1-220ENST00000528402 SPATA8Q6RVD6 105 aa7.52□□□□□ -1.2
ECHDC1-220ENST00000528402 H1FX-AS1Q4G0G2 97 aa7.52□□□□□ -1.21
ECHDC1-220ENST00000528402 S4R3F8 94 aa7.5□□□□□ -1.21
ECHDC1-220ENST00000528402 MIR22HGQ0VDD5 57 aa7.49□□□□□ -1.21
ECHDC1-220ENST00000528402 HERC2O95714 4834 aa7.47□□□□□ -1.21
ECHDC1-220ENST00000528402 ABCA13Q86UQ4 5058 aa7.46□□□□□ -1.22
ECHDC1-220ENST00000528402 A8MU10 97 aa7.45□□□□□ -1.22
ECHDC1-220ENST00000528402 PMAIP1Q13794 54 aa7.43□□□□□ -1.22
ECHDC1-220ENST00000528402 A0A1B0GU33 70 aa7.42□□□□□ -1.22
ECHDC1-220ENST00000528402 LRP2P98164 4655 aa7.35□□□□□ -1.23
ECHDC1-220ENST00000528402 CSAG1Q6PB30 78 aa7.34□□□□□ -1.23
ECHDC1-220ENST00000528402 A6NN06 94 aa7.32□□□□□ -1.24
ECHDC1-220ENST00000528402 H0YAA0 97 aa7.27□□□□□ -1.25
ECHDC1-220ENST00000528402 KRTAP10-6P60371 365 aaPredicted RBP7.27□□□□□ -1.25
ECHDC1-220ENST00000528402 KRTAP4-8Q9BYQ9 185 aa7.27□□□□□ -1.25
ECHDC1-220ENST00000528402 LPAP08519 4548 aa7.26□□□□□ -1.25
ECHDC1-220ENST00000528402 KTN1-AS1Q86SY8 53 aa7.21□□□□□ -1.25
ECHDC1-220ENST00000528402 MUC17Q685J3 4493 aa7.2□□□□□ -1.26
ECHDC1-220ENST00000528402 KRTAP4-1Q9BYQ7 146 aa7.19□□□□□ -1.26
ECHDC1-220ENST00000528402 K7ERS5 55 aa7.18□□□□□ -1.26
ECHDC1-220ENST00000528402 ADM2Q7Z4H4 148 aa7.18□□□□□ -1.26
ECHDC1-220ENST00000528402 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.15□□□□□ -1.27
ECHDC1-220ENST00000528402 KRTAP9-2Q9BYQ4 174 aa7.14□□□□□ -1.27
ECHDC1-220ENST00000528402 P0C880 135 aa7.13□□□□□ -1.27
ECHDC1-220ENST00000528402 M0QZ58 72 aa7.11□□□□□ -1.27
ECHDC1-220ENST00000528402 KRTAP9-6A0A140TA67 174 aa7.1□□□□□ -1.27
ECHDC1-220ENST00000528402 KRTAP19-2Q3LHN2 52 aa7.1□□□□□ -1.27
ECHDC1-220ENST00000528402 PCLOQ9Y6V0 5065 aa7.07□□□□□ -1.28
ECHDC1-220ENST00000528402 KRTAP13-4Q3LI77 160 aa7.05□□□□□ -1.28
ECHDC1-220ENST00000528402 HERC1Q15751 4861 aa7.04□□□□□ -1.28
ECHDC1-220ENST00000528402 HMCN2Q8NDA2 5059 aa6.99□□□□□ -1.29
ECHDC1-220ENST00000528402 A0A0D9SG42 100 aa6.97□□□□□ -1.29
ECHDC1-220ENST00000528402 R4GN34 69 aa6.93□□□□□ -1.3
ECHDC1-220ENST00000528402 LCE3BQ5TA77 95 aa6.87□□□□□ -1.31
ECHDC1-220ENST00000528402 FLGP20930 4061 aaPredicted RBP6.87□□□□□ -1.31
ECHDC1-220ENST00000528402 ROMO1P60602 79 aa6.86□□□□□ -1.31
ECHDC1-220ENST00000528402 KRTAP4-12Q9BQ66 201 aa6.86□□□□□ -1.31
ECHDC1-220ENST00000528402 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
ECHDC1-220ENST00000528402 CRIPTQ9P021 101 aa6.85□□□□□ -1.31
ECHDC1-220ENST00000528402 SPINT4Q6UDR6 99 aa6.84□□□□□ -1.32
ECHDC1-220ENST00000528402 PRAC1Q96KF2 57 aa6.83□□□□□ -1.32
ECHDC1-220ENST00000528402 KRTAP12-2P59991 146 aa6.82□□□□□ -1.32
ECHDC1-220ENST00000528402 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
ECHDC1-220ENST00000528402 KRTAP9-4Q9BYQ2 154 aa6.78□□□□□ -1.32
ECHDC1-220ENST00000528402 LINC01554Q52M75 96 aa6.75□□□□□ -1.33
ECHDC1-220ENST00000528402 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
ECHDC1-220ENST00000528402 MUC2Q02817 5179 aa6.71□□□□□ -1.33
ECHDC1-220ENST00000528402 KRTAP25-1Q3LHN0 102 aa6.7□□□□□ -1.34
ECHDC1-220ENST00000528402 RNF213Q63HN8 5207 aa6.68□□□□□ -1.34
ECHDC1-220ENST00000528402 M0R2T5 61 aa6.67□□□□□ -1.34
ECHDC1-220ENST00000528402 MT1HP80294 61 aa6.67□□□□□ -1.34
ECHDC1-220ENST00000528402 KRTAP19-1Q8IUB9 90 aa6.65□□□□□ -1.35
ECHDC1-220ENST00000528402 UBR4Q5T4S7 5183 aa6.57□□□□□ -1.36
ECHDC1-220ENST00000528402 SPRR2GQ9BYE4 73 aa6.55□□□□□ -1.36
ECHDC1-220ENST00000528402 CAMK2N1Q7Z7J9 78 aa6.53□□□□□ -1.36
ECHDC1-220ENST00000528402 KRTAP4-7Q9BYR0 210 aa6.5□□□□□ -1.37
ECHDC1-220ENST00000528402 FAT4Q6V0I7 4981 aa6.47□□□□□ -1.37
ECHDC1-220ENST00000528402 MT2AP02795 61 aa6.47□□□□□ -1.37
ECHDC1-220ENST00000528402 KRTAP10-10P60014 251 aa6.47□□□□□ -1.37
ECHDC1-220ENST00000528402 KRTAP9-8Q9BYQ0 159 aa6.47□□□□□ -1.37
ECHDC1-220ENST00000528402 C10orf95Q9H7T3 257 aa6.47□□□□□ -1.37
ECHDC1-220ENST00000528402 LCE1DQ5T752 114 aa6.44□□□□□ -1.38
ECHDC1-220ENST00000528402 PLAC4Q8WY50 150 aa6.44□□□□□ -1.38
ECHDC1-220ENST00000528402 MT1FP04733 61 aa6.42□□□□□ -1.38
ECHDC1-220ENST00000528402 KRTAP19-8Q3LI54 63 aa6.33□□□□□ -1.4
ECHDC1-220ENST00000528402 PP632Q6XCG6 107 aa6.33□□□□□ -1.4
ECHDC1-220ENST00000528402 KRTAP4-9Q9BYQ8 210 aa6.31□□□□□ -1.4
ECHDC1-220ENST00000528402 TNP1P09430 55 aa6.3□□□□□ -1.4
ECHDC1-220ENST00000528402 KRTAP23-1A1A580 65 aa6.28□□□□□ -1.4
ECHDC1-220ENST00000528402 KRTAP9-3Q9BYQ3 159 aa6.24□□□□□ -1.41
ECHDC1-220ENST00000528402 KRTAP4-2Q9BYR5 136 aa6.24□□□□□ -1.41
ECHDC1-220ENST00000528402 H3BS24 57 aa6.19□□□□□ -1.42
ECHDC1-220ENST00000528402 MT1BP07438 61 aa6.16□□□□□ -1.42
ECHDC1-220ENST00000528402 PRO2289Q9P1D8 64 aa6.05□□□□□ -1.44
ECHDC1-220ENST00000528402 KRTAP10-5P60370 271 aa6.03□□□□□ -1.44
ECHDC1-220ENST00000528402 KRTAP4-11Q9BYQ6 195 aa6.03□□□□□ -1.44
ECHDC1-220ENST00000528402 MT1XP80297 61 aa6.02□□□□□ -1.45
ECHDC1-220ENST00000528402 KRTAP15-1Q3LI76 137 aa5.99□□□□□ -1.45
ECHDC1-220ENST00000528402 LCE4AQ5TA78 99 aa5.93□□□□□ -1.46
ECHDC1-220ENST00000528402 LCE3AQ5TA76 89 aa5.87□□□□□ -1.47
ECHDC1-220ENST00000528402 KRTAP8-1Q8IUC2 63 aa5.85□□□□□ -1.47
ECHDC1-220ENST00000528402 KRTAP10-12P60413 245 aa5.84□□□□□ -1.47
ECHDC1-220ENST00000528402 KRTAP10-7P60409 375 aaPredicted RBP5.77□□□□□ -1.49
ECHDC1-220ENST00000528402 LCE5AQ5TCM9 118 aa5.75□□□□□ -1.49
ECHDC1-220ENST00000528402 KRTAP5-3Q6L8H2 238 aa5.74□□□□□ -1.49
ECHDC1-220ENST00000528402 KRTAP9-7A8MTY7 169 aa5.73□□□□□ -1.49
ECHDC1-220ENST00000528402 USH2AO75445 5202 aa5.71□□□□□ -1.5
ECHDC1-220ENST00000528402 KRTAP12-3P60328 96 aa5.68□□□□□ -1.5
ECHDC1-220ENST00000528402 LUZP6Q538Z0 58 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms