RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 IGKV2D-30A0A075B6S6 120 aa5.31□□□□□ -1.56
USP39-215ENST00000481409 SNURFQ9Y675 71 aa5.26□□□□□ -1.57
USP39-215ENST00000481409 MUC17Q685J3 4493 aa5.25□□□□□ -1.57
USP39-215ENST00000481409 CCDC179H3BU77 68 aa5.25□□□□□ -1.57
USP39-215ENST00000481409 SPANXA2-OT1Q8N9U9 137 aa5.25□□□□□ -1.57
USP39-215ENST00000481409 KRTAP19-4Q3LI73 84 aa5.24□□□□□ -1.57
USP39-215ENST00000481409 RBM12B-AS1Q9P1G2 102 aa5.24□□□□□ -1.57
USP39-215ENST00000481409 HRES1P13985 223 aa5.23□□□□□ -1.57
USP39-215ENST00000481409 KRTAP5-3Q6L8H2 238 aa5.23□□□□□ -1.57
USP39-215ENST00000481409 A8MUN3 132 aa5.22□□□□□ -1.57
USP39-215ENST00000481409 H7BZZ5 65 aa5.22□□□□□ -1.57
USP39-215ENST00000481409 MPLKIPQ8TAP9 179 aa5.22□□□□□ -1.57
USP39-215ENST00000481409 ATP5EP56381 51 aaPredicted RBP5.2□□□□□ -1.58
USP39-215ENST00000481409 COX6B2Q6YFQ2 88 aa5.2□□□□□ -1.58
USP39-215ENST00000481409 KRTAP4-1Q9BYQ7 146 aa5.19□□□□□ -1.58
USP39-215ENST00000481409 TMEM258P61165 79 aa5.18□□□□□ -1.58
USP39-215ENST00000481409 C4orf26Q17RF5 130 aa5.17□□□□□ -1.58
USP39-215ENST00000481409 KRTAP9-3Q9BYQ3 159 aa5.17□□□□□ -1.58
USP39-215ENST00000481409 DMAC1Q96GE9 116 aa5.16□□□□□ -1.58
USP39-215ENST00000481409 CYSTM1Q9H1C7 97 aa5.16□□□□□ -1.58
USP39-215ENST00000481409 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.59
USP39-215ENST00000481409 ACYP2P14621 99 aa5.14□□□□□ -1.59
USP39-215ENST00000481409 FAM236DA0A1B0GTK5 79 aa5.13□□□□□ -1.59
USP39-215ENST00000481409 FAM236CP0DP71 79 aa5.13□□□□□ -1.59
USP39-215ENST00000481409 H1FX-AS1Q4G0G2 97 aa5.12□□□□□ -1.59
USP39-215ENST00000481409 KRTAP3-1Q9BYR8 98 aa5.09□□□□□ -1.59
USP39-215ENST00000481409 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
USP39-215ENST00000481409 KRTAP9-8Q9BYQ0 159 aa5.06□□□□□ -1.6
USP39-215ENST00000481409 UBR4Q5T4S7 5183 aa5.06□□□□□ -1.6
USP39-215ENST00000481409 SPTSSBQ8NFR3 76 aa5.04□□□□□ -1.6
USP39-215ENST00000481409 S4R3F8 94 aa5.03□□□□□ -1.6
USP39-215ENST00000481409 CHKB-CPT1BH3BT56 60 aa5.02□□□□□ -1.61
USP39-215ENST00000481409 COA5Q86WW8 74 aa5.01□□□□□ -1.61
USP39-215ENST00000481409 RNF213Q63HN8 5207 aa5.01□□□□□ -1.61
USP39-215ENST00000481409 MUC2Q02817 5179 aa5□□□□□ -1.61
USP39-215ENST00000481409 SERP1Q9Y6X1 66 aa5□□□□□ -1.61
USP39-215ENST00000481409 LCA10Q71F78 164 aa4.98□□□□□ -1.61
USP39-215ENST00000481409 RPS28P62857 69 aaKnown RBP4.97□□□□□ -1.61
USP39-215ENST00000481409 CSAG1Q6PB30 78 aa4.97□□□□□ -1.61
USP39-215ENST00000481409 MT1HP80294 61 aa4.93□□□□□ -1.62
USP39-215ENST00000481409 M0R2T5 61 aa4.9□□□□□ -1.63
USP39-215ENST00000481409 FLGP20930 4061 aaPredicted RBP4.9□□□□□ -1.63
USP39-215ENST00000481409 H0YAA0 97 aa4.89□□□□□ -1.63
USP39-215ENST00000481409 FAT4Q6V0I7 4981 aa4.87□□□□□ -1.63
USP39-215ENST00000481409 SMIM26A0A096LP01 95 aa4.86□□□□□ -1.63
USP39-215ENST00000481409 V9GYY9 64 aa4.86□□□□□ -1.63
USP39-215ENST00000481409 SEC61GP60059 68 aa4.84□□□□□ -1.63
USP39-215ENST00000481409 LINC01558Q9Y6Z2 57 aa4.81□□□□□ -1.64
USP39-215ENST00000481409 Q1T7F1 81 aa4.8□□□□□ -1.64
USP39-215ENST00000481409 PRR15LQ9BU68 103 aa4.8□□□□□ -1.64
USP39-215ENST00000481409 A0A1B0GU69 56 aa4.78□□□□□ -1.64
USP39-215ENST00000481409 KRTAP10-6P60371 365 aaPredicted RBP4.78□□□□□ -1.64
USP39-215ENST00000481409 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
USP39-215ENST00000481409 CRIPTQ9P021 101 aa4.75□□□□□ -1.65
USP39-215ENST00000481409 MT2AP02795 61 aa4.7□□□□□ -1.66
USP39-215ENST00000481409 M0QZ58 72 aa4.68□□□□□ -1.66
USP39-215ENST00000481409 KRTAP10-10P60014 251 aa4.68□□□□□ -1.66
USP39-215ENST00000481409 A0A1B0GU33 70 aa4.67□□□□□ -1.66
USP39-215ENST00000481409 P0C880 135 aa4.67□□□□□ -1.66
USP39-215ENST00000481409 MT1FP04733 61 aa4.65□□□□□ -1.67
USP39-215ENST00000481409 R4GN34 69 aa4.65□□□□□ -1.67
USP39-215ENST00000481409 UQCR11O14957 56 aa4.64□□□□□ -1.67
USP39-215ENST00000481409 PSPHP1O15172 72 aa4.63□□□□□ -1.67
USP39-215ENST00000481409 Q5VV11 94 aa4.63□□□□□ -1.67
USP39-215ENST00000481409 SPRR2GQ9BYE4 73 aa4.61□□□□□ -1.67
USP39-215ENST00000481409 A6NED7 52 aa4.54□□□□□ -1.68
USP39-215ENST00000481409 A6NN06 94 aa4.54□□□□□ -1.68
USP39-215ENST00000481409 MIR22HGQ0VDD5 57 aa4.53□□□□□ -1.68
USP39-215ENST00000481409 KRTAP13-4Q3LI77 160 aa4.52□□□□□ -1.69
USP39-215ENST00000481409 SPATA8Q6RVD6 105 aa4.52□□□□□ -1.69
USP39-215ENST00000481409 KRTAP19-8Q3LI54 63 aa4.5□□□□□ -1.69
USP39-215ENST00000481409 CDC42SE1Q9NRR8 79 aa4.48□□□□□ -1.69
USP39-215ENST00000481409 LINC01554Q52M75 96 aa4.46□□□□□ -1.7
USP39-215ENST00000481409 PLAC4Q8WY50 150 aa4.44□□□□□ -1.7
USP39-215ENST00000481409 A0A0D9SG42 100 aa4.43□□□□□ -1.7
USP39-215ENST00000481409 K7ERS5 55 aa4.43□□□□□ -1.7
USP39-215ENST00000481409 A8MU10 97 aa4.41□□□□□ -1.7
USP39-215ENST00000481409 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
USP39-215ENST00000481409 MT1BP07438 61 aa4.39□□□□□ -1.71
USP39-215ENST00000481409 KRTAP12-1P59990 96 aa4.39□□□□□ -1.71
USP39-215ENST00000481409 SPINT4Q6UDR6 99 aa4.37□□□□□ -1.71
USP39-215ENST00000481409 BRK1Q8WUW1 75 aa4.37□□□□□ -1.71
USP39-215ENST00000481409 KRTAP12-2P59991 146 aa4.35□□□□□ -1.71
USP39-215ENST00000481409 CAMK2N1Q7Z7J9 78 aa4.33□□□□□ -1.72
USP39-215ENST00000481409 PRO2289Q9P1D8 64 aa4.31□□□□□ -1.72
USP39-215ENST00000481409 KRTAP15-1Q3LI76 137 aa4.29□□□□□ -1.72
USP39-215ENST00000481409 KRTAP19-6Q3LI70 58 aa4.27□□□□□ -1.73
USP39-215ENST00000481409 PRO0628Q9UI54 55 aa4.26□□□□□ -1.73
USP39-215ENST00000481409 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
USP39-215ENST00000481409 USH2AO75445 5202 aa4.24□□□□□ -1.73
USP39-215ENST00000481409 MT1XP80297 61 aa4.22□□□□□ -1.73
USP39-215ENST00000481409 CRCT1Q9UGL9 99 aa4.18□□□□□ -1.74
USP39-215ENST00000481409 ROMO1P60602 79 aa4.16□□□□□ -1.74
USP39-215ENST00000481409 PMAIP1Q13794 54 aa4.15□□□□□ -1.75
USP39-215ENST00000481409 C10orf95Q9H7T3 257 aa4.14□□□□□ -1.75
USP39-215ENST00000481409 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
USP39-215ENST00000481409 TNP1P09430 55 aa4.13□□□□□ -1.75
USP39-215ENST00000481409 KRTAP25-1Q3LHN0 102 aa4.12□□□□□ -1.75
USP39-215ENST00000481409 FSIP2Q5CZC0 6907 aa4.08□□□□□ -1.76
USP39-215ENST00000481409 KRTAP10-12P60413 245 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms