RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 BRK1Q8WUW1 75 aa6.34□□□□□ -1.39
SYNE1-222ENST00000474655 KRTAP9-2Q9BYQ4 174 aa6.34□□□□□ -1.4
SYNE1-222ENST00000474655 LCE2CQ5TA81 110 aa6.31□□□□□ -1.4
SYNE1-222ENST00000474655 KRTAP9-6A0A140TA67 174 aa6.31□□□□□ -1.4
SYNE1-222ENST00000474655 SPTSSBQ8NFR3 76 aa6.29□□□□□ -1.4
SYNE1-222ENST00000474655 ABCA13Q86UQ4 5058 aa6.29□□□□□ -1.4
SYNE1-222ENST00000474655 BIRC6Q9NR09 4857 aa6.28□□□□□ -1.4
SYNE1-222ENST00000474655 HERC2O95714 4834 aa6.28□□□□□ -1.4
SYNE1-222ENST00000474655 A0A1B0GU69 56 aa6.27□□□□□ -1.41
SYNE1-222ENST00000474655 LORP23490 312 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-222ENST00000474655 LRP2P98164 4655 aa6.26□□□□□ -1.41
SYNE1-222ENST00000474655 J3QL48 77 aa6.26□□□□□ -1.41
SYNE1-222ENST00000474655 A6NED7 52 aa6.25□□□□□ -1.41
SYNE1-222ENST00000474655 LCA10Q71F78 164 aa6.23□□□□□ -1.41
SYNE1-222ENST00000474655 CDC42SE1Q9NRR8 79 aa6.22□□□□□ -1.41
SYNE1-222ENST00000474655 LPAP08519 4548 aa6.22□□□□□ -1.41
SYNE1-222ENST00000474655 A8MU10 97 aa6.2□□□□□ -1.42
SYNE1-222ENST00000474655 SEC61GP60059 68 aa6.18□□□□□ -1.42
SYNE1-222ENST00000474655 SEC61BP60468 96 aaKnown RBP6.16□□□□□ -1.42
SYNE1-222ENST00000474655 UQCR11O14957 56 aa6.14□□□□□ -1.43
SYNE1-222ENST00000474655 H1FX-AS1Q4G0G2 97 aa6.14□□□□□ -1.43
SYNE1-222ENST00000474655 LCE3BQ5TA77 95 aa6.14□□□□□ -1.43
SYNE1-222ENST00000474655 PMAIP1Q13794 54 aa6.13□□□□□ -1.43
SYNE1-222ENST00000474655 SPATA8Q6RVD6 105 aa6.13□□□□□ -1.43
SYNE1-222ENST00000474655 S4R3F8 94 aa6.13□□□□□ -1.43
SYNE1-222ENST00000474655 RBM12B-AS1Q9P1G2 102 aa6.12□□□□□ -1.43
SYNE1-222ENST00000474655 MIR22HGQ0VDD5 57 aa6.08□□□□□ -1.44
SYNE1-222ENST00000474655 KRTAP4-1Q9BYQ7 146 aa6.05□□□□□ -1.44
SYNE1-222ENST00000474655 KRTAP4-8A0A0G2JLE6 195 aa6.04□□□□□ -1.44
SYNE1-222ENST00000474655 MUC17Q685J3 4493 aa6.04□□□□□ -1.44
SYNE1-222ENST00000474655 A0A1B0GU33 70 aa6.03□□□□□ -1.44
SYNE1-222ENST00000474655 KRTAP10-6P60371 365 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-222ENST00000474655 KRTAP9-9Q9BYP9 154 aa6.01□□□□□ -1.45
SYNE1-222ENST00000474655 KRTAP9-4Q9BYQ2 154 aa6.01□□□□□ -1.45
SYNE1-222ENST00000474655 H0YAA0 97 aa6□□□□□ -1.45
SYNE1-222ENST00000474655 PCLOQ9Y6V0 5065 aa5.99□□□□□ -1.45
SYNE1-222ENST00000474655 A6NN06 94 aa5.98□□□□□ -1.45
SYNE1-222ENST00000474655 KRTAP4-12Q9BQ66 201 aa5.98□□□□□ -1.45
SYNE1-222ENST00000474655 KRTAP19-2Q3LHN2 52 aa5.97□□□□□ -1.45
SYNE1-222ENST00000474655 CSAG1Q6PB30 78 aa5.97□□□□□ -1.45
SYNE1-222ENST00000474655 KTN1-AS1Q86SY8 53 aa5.95□□□□□ -1.46
SYNE1-222ENST00000474655 HERC1Q15751 4861 aa5.91□□□□□ -1.46
SYNE1-222ENST00000474655 P0C880 135 aa5.9□□□□□ -1.46
SYNE1-222ENST00000474655 HMCN2Q8NDA2 5059 aa5.89□□□□□ -1.47
SYNE1-222ENST00000474655 ADM2Q7Z4H4 148 aa5.88□□□□□ -1.47
SYNE1-222ENST00000474655 KRTAP4-7Q9BYR0 210 aa5.88□□□□□ -1.47
SYNE1-222ENST00000474655 KRTAP13-4Q3LI77 160 aa5.86□□□□□ -1.47
SYNE1-222ENST00000474655 MUC2Q02817 5179 aa5.79□□□□□ -1.48
SYNE1-222ENST00000474655 M0QZ58 72 aa5.78□□□□□ -1.48
SYNE1-222ENST00000474655 FLGP20930 4061 aaPredicted RBP5.78□□□□□ -1.48
SYNE1-222ENST00000474655 K7ERS5 55 aa5.74□□□□□ -1.49
SYNE1-222ENST00000474655 LCE1DQ5T752 114 aa5.74□□□□□ -1.49
SYNE1-222ENST00000474655 A0A0D9SG42 100 aa5.71□□□□□ -1.5
SYNE1-222ENST00000474655 KRTAP19-1Q8IUB9 90 aa5.7□□□□□ -1.5
SYNE1-222ENST00000474655 KRTAP12-1P59990 96 aa5.65□□□□□ -1.5
SYNE1-222ENST00000474655 R4GN34 69 aa5.65□□□□□ -1.5
SYNE1-222ENST00000474655 KRTAP12-2P59991 146 aa5.64□□□□□ -1.51
SYNE1-222ENST00000474655 KRTAP4-9Q9BYQ8 210 aa5.64□□□□□ -1.51
SYNE1-222ENST00000474655 KRTAP4-2Q9BYR5 136 aa5.6□□□□□ -1.51
SYNE1-222ENST00000474655 PRAC1Q96KF2 57 aa5.6□□□□□ -1.51
SYNE1-222ENST00000474655 UBR4Q5T4S7 5183 aa5.58□□□□□ -1.52
SYNE1-222ENST00000474655 RNF213Q63HN8 5207 aa5.57□□□□□ -1.52
SYNE1-222ENST00000474655 ROMO1P60602 79 aa5.57□□□□□ -1.52
SYNE1-222ENST00000474655 MT1HP80294 61 aa5.56□□□□□ -1.52
SYNE1-222ENST00000474655 SPINT4Q6UDR6 99 aa5.56□□□□□ -1.52
SYNE1-222ENST00000474655 CRIPTQ9P021 101 aa5.56□□□□□ -1.52
SYNE1-222ENST00000474655 LINC01554Q52M75 96 aa5.53□□□□□ -1.52
SYNE1-222ENST00000474655 FAT4Q6V0I7 4981 aa5.52□□□□□ -1.53
SYNE1-222ENST00000474655 M0R2T5 61 aa5.47□□□□□ -1.53
SYNE1-222ENST00000474655 KRTAP25-1Q3LHN0 102 aa5.45□□□□□ -1.54
SYNE1-222ENST00000474655 SPRR2GQ9BYE4 73 aa5.42□□□□□ -1.54
SYNE1-222ENST00000474655 KRTAP9-8Q9BYQ0 159 aa5.41□□□□□ -1.54
SYNE1-222ENST00000474655 MT2AP02795 61 aa5.39□□□□□ -1.55
SYNE1-222ENST00000474655 KRTAP5-3Q6L8H2 238 aa5.37□□□□□ -1.55
SYNE1-222ENST00000474655 MT1FP04733 61 aa5.37□□□□□ -1.55
SYNE1-222ENST00000474655 H3BS24 57 aa5.36□□□□□ -1.55
SYNE1-222ENST00000474655 KRTAP4-11Q9BYQ6 195 aa5.34□□□□□ -1.55
SYNE1-222ENST00000474655 C10orf95Q9H7T3 257 aa5.34□□□□□ -1.56
SYNE1-222ENST00000474655 KRTAP10-10P60014 251 aa5.33□□□□□ -1.56
SYNE1-222ENST00000474655 CAMK2N1Q7Z7J9 78 aa5.3□□□□□ -1.56
SYNE1-222ENST00000474655 KRTAP19-8Q3LI54 63 aa5.24□□□□□ -1.57
SYNE1-222ENST00000474655 PLAC4Q8WY50 150 aa5.22□□□□□ -1.57
SYNE1-222ENST00000474655 KRTAP9-3Q9BYQ3 159 aa5.21□□□□□ -1.58
SYNE1-222ENST00000474655 MT1BP07438 61 aa5.14□□□□□ -1.59
SYNE1-222ENST00000474655 TNP1P09430 55 aa5.11□□□□□ -1.59
SYNE1-222ENST00000474655 PP632Q6XCG6 107 aa5.1□□□□□ -1.59
SYNE1-222ENST00000474655 KRTAP23-1A1A580 65 aa5.08□□□□□ -1.6
SYNE1-222ENST00000474655 KRTAP10-5P60370 271 aa5.02□□□□□ -1.61
SYNE1-222ENST00000474655 MT1XP80297 61 aa5.02□□□□□ -1.61
SYNE1-222ENST00000474655 LCE5AQ5TCM9 118 aa4.93□□□□□ -1.62
SYNE1-222ENST00000474655 LCE4AQ5TA78 99 aa4.91□□□□□ -1.62
SYNE1-222ENST00000474655 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
SYNE1-222ENST00000474655 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.63
SYNE1-222ENST00000474655 LCE3AQ5TA76 89 aa4.86□□□□□ -1.63
SYNE1-222ENST00000474655 KRTAP10-7P60409 375 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-222ENST00000474655 KRTAP8-1Q8IUC2 63 aa4.81□□□□□ -1.64
SYNE1-222ENST00000474655 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
SYNE1-222ENST00000474655 USH2AO75445 5202 aa4.78□□□□□ -1.64
SYNE1-222ENST00000474655 NDUFAF8A1L188 74 aa4.75□□□□□ -1.65
SYNE1-222ENST00000474655 A0A0A0MQY5 61 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms