RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 KRTAP3-1Q9BYR8 98 aa4.81□□□□□ -1.64
VPS52-216ENST00000471309 MUC17Q685J3 4493 aa4.8□□□□□ -1.64
VPS52-216ENST00000471309 RNF213Q63HN8 5207 aa4.8□□□□□ -1.64
VPS52-216ENST00000471309 MPLKIPQ8TAP9 179 aa4.79□□□□□ -1.64
VPS52-216ENST00000471309 CHKB-CPT1BH3BT56 60 aa4.78□□□□□ -1.64
VPS52-216ENST00000471309 KRTAP4-1Q9BYQ7 146 aa4.75□□□□□ -1.65
VPS52-216ENST00000471309 RBM12B-AS1Q9P1G2 102 aa4.75□□□□□ -1.65
VPS52-216ENST00000471309 Q1T7F1 81 aa4.72□□□□□ -1.65
VPS52-216ENST00000471309 H1FX-AS1Q4G0G2 97 aa4.71□□□□□ -1.66
VPS52-216ENST00000471309 SPTSSBQ8NFR3 76 aa4.71□□□□□ -1.66
VPS52-216ENST00000471309 V9GYY9 64 aa4.71□□□□□ -1.66
VPS52-216ENST00000471309 S4R3F8 94 aa4.68□□□□□ -1.66
VPS52-216ENST00000471309 LINC01558Q9Y6Z2 57 aa4.67□□□□□ -1.66
VPS52-216ENST00000471309 LCA10Q71F78 164 aa4.66□□□□□ -1.66
VPS52-216ENST00000471309 KRTAP19-2Q3LHN2 52 aa4.65□□□□□ -1.67
VPS52-216ENST00000471309 KRTAP9-2Q9BYQ4 174 aa4.65□□□□□ -1.67
VPS52-216ENST00000471309 PRR15LQ9BU68 103 aa4.63□□□□□ -1.67
VPS52-216ENST00000471309 PSPHP1O15172 72 aa4.61□□□□□ -1.67
VPS52-216ENST00000471309 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
VPS52-216ENST00000471309 A0A1B0GU69 56 aa4.59□□□□□ -1.67
VPS52-216ENST00000471309 Q5VV11 94 aa4.59□□□□□ -1.67
VPS52-216ENST00000471309 SEC61GP60059 68 aa4.57□□□□□ -1.68
VPS52-216ENST00000471309 CSAG1Q6PB30 78 aa4.56□□□□□ -1.68
VPS52-216ENST00000471309 KRTAP23-1A1A580 65 aa4.55□□□□□ -1.68
VPS52-216ENST00000471309 MUC2Q02817 5179 aa4.54□□□□□ -1.68
VPS52-216ENST00000471309 H0YAA0 97 aa4.51□□□□□ -1.69
VPS52-216ENST00000471309 FAT4Q6V0I7 4981 aa4.51□□□□□ -1.69
VPS52-216ENST00000471309 A6NED7 52 aa4.48□□□□□ -1.69
VPS52-216ENST00000471309 KRTAP10-6P60371 365 aaPredicted RBP4.47□□□□□ -1.69
VPS52-216ENST00000471309 LOC100996750A0A140TA64 210 aa4.46□□□□□ -1.7
VPS52-216ENST00000471309 UQCR11O14957 56 aa4.46□□□□□ -1.7
VPS52-216ENST00000471309 ADM2Q7Z4H4 148 aa4.46□□□□□ -1.7
VPS52-216ENST00000471309 KRTAP4-6Q9BYQ5 205 aa4.46□□□□□ -1.7
VPS52-216ENST00000471309 A0A1B0GU33 70 aa4.45□□□□□ -1.7
VPS52-216ENST00000471309 MT1HP80294 61 aa4.44□□□□□ -1.7
VPS52-216ENST00000471309 P0C880 135 aa4.43□□□□□ -1.7
VPS52-216ENST00000471309 BRK1Q8WUW1 75 aa4.43□□□□□ -1.7
VPS52-216ENST00000471309 CDC42SE1Q9NRR8 79 aa4.42□□□□□ -1.7
VPS52-216ENST00000471309 MIR22HGQ0VDD5 57 aa4.4□□□□□ -1.71
VPS52-216ENST00000471309 SPATA8Q6RVD6 105 aa4.4□□□□□ -1.71
VPS52-216ENST00000471309 FLGP20930 4061 aaPredicted RBP4.39□□□□□ -1.71
VPS52-216ENST00000471309 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
VPS52-216ENST00000471309 M0R2T5 61 aa4.38□□□□□ -1.71
VPS52-216ENST00000471309 KRTAP19-1Q8IUB9 90 aa4.36□□□□□ -1.71
VPS52-216ENST00000471309 A8MU10 97 aa4.35□□□□□ -1.71
VPS52-216ENST00000471309 M0QZ58 72 aa4.35□□□□□ -1.71
VPS52-216ENST00000471309 KRTAP13-4Q3LI77 160 aa4.35□□□□□ -1.71
VPS52-216ENST00000471309 PRO0628Q9UI54 55 aa4.35□□□□□ -1.71
VPS52-216ENST00000471309 CRCT1Q9UGL9 99 aa4.34□□□□□ -1.71
VPS52-216ENST00000471309 CRIPTQ9P021 101 aa4.31□□□□□ -1.72
VPS52-216ENST00000471309 FSIP2Q5CZC0 6907 aa4.3□□□□□ -1.72
VPS52-216ENST00000471309 R4GN34 69 aa4.3□□□□□ -1.72
VPS52-216ENST00000471309 KRTAP4-12Q9BQ66 201 aa4.29□□□□□ -1.72
VPS52-216ENST00000471309 MT2AP02795 61 aa4.27□□□□□ -1.73
VPS52-216ENST00000471309 KRTAP9-8Q9BYQ0 159 aa4.27□□□□□ -1.73
VPS52-216ENST00000471309 KRTAP4-8Q9BYQ9 185 aa4.27□□□□□ -1.73
VPS52-216ENST00000471309 A0A0D9SG42 100 aa4.25□□□□□ -1.73
VPS52-216ENST00000471309 LCE4AQ5TA78 99 aa4.25□□□□□ -1.73
VPS52-216ENST00000471309 A0A0A0MQY5 61 aa4.24□□□□□ -1.73
VPS52-216ENST00000471309 KRTAP9-7A8MTY7 169 aa4.24□□□□□ -1.73
VPS52-216ENST00000471309 MT1FP04733 61 aa4.24□□□□□ -1.73
VPS52-216ENST00000471309 K7ERS5 55 aa4.22□□□□□ -1.73
VPS52-216ENST00000471309 KRTAP10-10P60014 251 aa4.21□□□□□ -1.74
VPS52-216ENST00000471309 KRTAP12-1P59990 96 aa4.2□□□□□ -1.74
VPS52-216ENST00000471309 LINC01554Q52M75 96 aa4.2□□□□□ -1.74
VPS52-216ENST00000471309 SPRR2GQ9BYE4 73 aa4.2□□□□□ -1.74
VPS52-216ENST00000471309 A6NN06 94 aa4.19□□□□□ -1.74
VPS52-216ENST00000471309 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
VPS52-216ENST00000471309 KRTAP12-2P59991 146 aa4.18□□□□□ -1.74
VPS52-216ENST00000471309 PMAIP1Q13794 54 aa4.18□□□□□ -1.74
VPS52-216ENST00000471309 SPINT4Q6UDR6 99 aa4.15□□□□□ -1.75
VPS52-216ENST00000471309 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
VPS52-216ENST00000471309 KRTAP9-9Q9BYP9 154 aa4.1□□□□□ -1.75
VPS52-216ENST00000471309 KRTAP9-4Q9BYQ2 154 aa4.1□□□□□ -1.75
VPS52-216ENST00000471309 KRTAP19-8Q3LI54 63 aa4.09□□□□□ -1.75
VPS52-216ENST00000471309 LCE3BQ5TA77 95 aa4.06□□□□□ -1.76
VPS52-216ENST00000471309 ROMO1P60602 79 aa4.04□□□□□ -1.76
VPS52-216ENST00000471309 CAMK2N1Q7Z7J9 78 aa4.04□□□□□ -1.76
VPS52-216ENST00000471309 KTN1-AS1Q86SY8 53 aa4.04□□□□□ -1.76
VPS52-216ENST00000471309 PLAC4Q8WY50 150 aa4.04□□□□□ -1.76
VPS52-216ENST00000471309 MT1BP07438 61 aa4.02□□□□□ -1.77
VPS52-216ENST00000471309 KRTAP15-1Q3LI76 137 aa4.01□□□□□ -1.77
VPS52-216ENST00000471309 C10orf95Q9H7T3 257 aa3.96□□□□□ -1.78
VPS52-216ENST00000471309 PRAC1Q96KF2 57 aa3.91□□□□□ -1.78
VPS52-216ENST00000471309 KRTAP10-5P60370 271 aa3.89□□□□□ -1.79
VPS52-216ENST00000471309 MT1XP80297 61 aa3.89□□□□□ -1.79
VPS52-216ENST00000471309 KRTAP25-1Q3LHN0 102 aa3.89□□□□□ -1.79
VPS52-216ENST00000471309 SSPOA2VEC9 5147 aa3.89□□□□□ -1.79
VPS52-216ENST00000471309 USH2AO75445 5202 aa3.88□□□□□ -1.79
VPS52-216ENST00000471309 FCGBPQ9Y6R7 5405 aaPredicted RBP3.86□□□□□ -1.79
VPS52-216ENST00000471309 PRO2289Q9P1D8 64 aa3.86□□□□□ -1.79
VPS52-216ENST00000471309 TNP1P09430 55 aa3.85□□□□□ -1.79
VPS52-216ENST00000471309 KRTAP4-8A0A0G2JLE6 195 aa3.82□□□□□ -1.8
VPS52-216ENST00000471309 LCE1DQ5T752 114 aa3.82□□□□□ -1.8
VPS52-216ENST00000471309 LCE5AQ5TCM9 118 aa3.82□□□□□ -1.8
VPS52-216ENST00000471309 MACF1Q9UPN3 7388 aaKnown RBP3.78□□□□□ -1.8
VPS52-216ENST00000471309 SYNE2Q8WXH0 6885 aaKnown RBP3.78□□□□□ -1.8
VPS52-216ENST00000471309 KRTAP19-6Q3LI70 58 aa3.77□□□□□ -1.81
VPS52-216ENST00000471309 PP632Q6XCG6 107 aa3.76□□□□□ -1.81
VPS52-216ENST00000471309 KRTAP10-7P60409 375 aaPredicted RBP3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms