RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 SPANXA2-OT1Q8N9U9 137 aa7.32□□□□□ -1.24
NPHP4-205ENST00000466897 LCA10Q71F78 164 aa7.31□□□□□ -1.24
NPHP4-205ENST00000466897 NDUFC1O43677 76 aa7.3□□□□□ -1.24
NPHP4-205ENST00000466897 KRTAP9-8Q9BYQ0 159 aa7.26□□□□□ -1.25
NPHP4-205ENST00000466897 KRTAP3-3Q9BYR6 98 aa7.26□□□□□ -1.25
NPHP4-205ENST00000466897 CSAG1Q6PB30 78 aa7.25□□□□□ -1.25
NPHP4-205ENST00000466897 H7BZZ5 65 aa7.23□□□□□ -1.25
NPHP4-205ENST00000466897 ACYP2P14621 99 aa7.23□□□□□ -1.25
NPHP4-205ENST00000466897 KRTAP9-6A0A140TA67 174 aa7.22□□□□□ -1.25
NPHP4-205ENST00000466897 CYSTM1Q9H1C7 97 aa7.21□□□□□ -1.26
NPHP4-205ENST00000466897 CCDC179H3BU77 68 aa7.19□□□□□ -1.26
NPHP4-205ENST00000466897 MT2AP02795 61 aa7.19□□□□□ -1.26
NPHP4-205ENST00000466897 MT1FP04733 61 aa7.13□□□□□ -1.27
NPHP4-205ENST00000466897 H0YAA0 97 aa7.1□□□□□ -1.27
NPHP4-205ENST00000466897 KRTAP10-10P60014 251 aa7.1□□□□□ -1.27
NPHP4-205ENST00000466897 SPTSSBQ8NFR3 76 aa7.08□□□□□ -1.28
NPHP4-205ENST00000466897 CRCT1Q9UGL9 99 aa7.08□□□□□ -1.28
NPHP4-205ENST00000466897 CHKB-CPT1BH3BT56 60 aa7.07□□□□□ -1.28
NPHP4-205ENST00000466897 ATP5EP56381 51 aaPredicted RBP7.06□□□□□ -1.28
NPHP4-205ENST00000466897 COA5Q86WW8 74 aa7.03□□□□□ -1.28
NPHP4-205ENST00000466897 KRTAP3-2Q9BYR7 98 aa7.03□□□□□ -1.28
NPHP4-205ENST00000466897 KRTAP9-3Q9BYQ3 159 aa7.02□□□□□ -1.29
NPHP4-205ENST00000466897 TMEM258P61165 79 aa7.01□□□□□ -1.29
NPHP4-205ENST00000466897 FSIP2Q5CZC0 6907 aa6.97□□□□□ -1.29
NPHP4-205ENST00000466897 ADM2Q7Z4H4 148 aa6.95□□□□□ -1.3
NPHP4-205ENST00000466897 CRIPTQ9P021 101 aa6.94□□□□□ -1.3
NPHP4-205ENST00000466897 SPRR2GQ9BYE4 73 aa6.88□□□□□ -1.31
NPHP4-205ENST00000466897 LCE2BO14633 110 aa6.87□□□□□ -1.31
NPHP4-205ENST00000466897 KRTAP19-1Q8IUB9 90 aa6.87□□□□□ -1.31
NPHP4-205ENST00000466897 P0C880 135 aa6.85□□□□□ -1.31
NPHP4-205ENST00000466897 SERP1Q9Y6X1 66 aa6.77□□□□□ -1.33
NPHP4-205ENST00000466897 SEC61GP60059 68 aa6.76□□□□□ -1.33
NPHP4-205ENST00000466897 KRTAP19-8Q3LI54 63 aa6.76□□□□□ -1.33
NPHP4-205ENST00000466897 R4GN34 69 aa6.76□□□□□ -1.33
NPHP4-205ENST00000466897 USH2AO75445 5202 aa6.75□□□□□ -1.33
NPHP4-205ENST00000466897 M0QZ58 72 aa6.71□□□□□ -1.34
NPHP4-205ENST00000466897 Q5VV11 94 aa6.7□□□□□ -1.34
NPHP4-205ENST00000466897 SSPOA2VEC9 5147 aa6.68□□□□□ -1.34
NPHP4-205ENST00000466897 A0A1B0GU69 56 aa6.67□□□□□ -1.34
NPHP4-205ENST00000466897 MT1BP07438 61 aa6.67□□□□□ -1.34
NPHP4-205ENST00000466897 LINC01558Q9Y6Z2 57 aa6.65□□□□□ -1.34
NPHP4-205ENST00000466897 RPS28P62857 69 aaKnown RBP6.63□□□□□ -1.35
NPHP4-205ENST00000466897 PRR15LQ9BU68 103 aa6.61□□□□□ -1.35
NPHP4-205ENST00000466897 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.6□□□□□ -1.35
NPHP4-205ENST00000466897 KRTAP19-6Q3LI70 58 aa6.6□□□□□ -1.35
NPHP4-205ENST00000466897 A0A1B0GU33 70 aa6.59□□□□□ -1.35
NPHP4-205ENST00000466897 KRTAP13-4Q3LI77 160 aa6.57□□□□□ -1.36
NPHP4-205ENST00000466897 A6NN06 94 aa6.55□□□□□ -1.36
NPHP4-205ENST00000466897 V9GYY9 64 aa6.55□□□□□ -1.36
NPHP4-205ENST00000466897 FCGBPQ9Y6R7 5405 aaPredicted RBP6.54□□□□□ -1.36
NPHP4-205ENST00000466897 LINC01554Q52M75 96 aa6.54□□□□□ -1.36
NPHP4-205ENST00000466897 SMIM26A0A096LP01 95 aa6.53□□□□□ -1.36
NPHP4-205ENST00000466897 Q1T7F1 81 aa6.53□□□□□ -1.36
NPHP4-205ENST00000466897 PLAC4Q8WY50 150 aa6.51□□□□□ -1.37
NPHP4-205ENST00000466897 KRTAP9-7A8MTY7 169 aa6.49□□□□□ -1.37
NPHP4-205ENST00000466897 SPATA8Q6RVD6 105 aa6.47□□□□□ -1.37
NPHP4-205ENST00000466897 KRTAP10-5P60370 271 aa6.45□□□□□ -1.38
NPHP4-205ENST00000466897 UQCR11O14957 56 aa6.4□□□□□ -1.38
NPHP4-205ENST00000466897 PRO2289Q9P1D8 64 aa6.39□□□□□ -1.39
NPHP4-205ENST00000466897 A0A0D9SG42 100 aa6.37□□□□□ -1.39
NPHP4-205ENST00000466897 PSPHP1O15172 72 aa6.37□□□□□ -1.39
NPHP4-205ENST00000466897 MT1XP80297 61 aa6.36□□□□□ -1.39
NPHP4-205ENST00000466897 KRTAP12-1P59990 96 aa6.32□□□□□ -1.4
NPHP4-205ENST00000466897 A8MU10 97 aa6.31□□□□□ -1.4
NPHP4-205ENST00000466897 MACF1Q9UPN3 7388 aaKnown RBP6.31□□□□□ -1.4
NPHP4-205ENST00000466897 MIR22HGQ0VDD5 57 aa6.28□□□□□ -1.4
NPHP4-205ENST00000466897 PRO0628Q9UI54 55 aa6.28□□□□□ -1.4
NPHP4-205ENST00000466897 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
NPHP4-205ENST00000466897 SPINT4Q6UDR6 99 aa6.27□□□□□ -1.41
NPHP4-205ENST00000466897 CAMK2N1Q7Z7J9 78 aa6.26□□□□□ -1.41
NPHP4-205ENST00000466897 SYNE2Q8WXH0 6885 aaKnown RBP6.21□□□□□ -1.41
NPHP4-205ENST00000466897 KRTAP6-3Q3LI67 103 aa6.21□□□□□ -1.42
NPHP4-205ENST00000466897 A6NED7 52 aa6.2□□□□□ -1.42
NPHP4-205ENST00000466897 K7ERS5 55 aa6.09□□□□□ -1.43
NPHP4-205ENST00000466897 KRTAP10-12P60413 245 aa6.07□□□□□ -1.44
NPHP4-205ENST00000466897 KRTAP10-7P60409 375 aaPredicted RBP6.06□□□□□ -1.44
NPHP4-205ENST00000466897 CDC42SE1Q9NRR8 79 aa6.06□□□□□ -1.44
NPHP4-205ENST00000466897 C10orf95Q9H7T3 257 aa5.99□□□□□ -1.45
NPHP4-205ENST00000466897 KRTAP5-9P26371 169 aa5.95□□□□□ -1.46
NPHP4-205ENST00000466897 KMT2DO14686 5537 aa5.92□□□□□ -1.46
NPHP4-205ENST00000466897 TNP1P09430 55 aa5.91□□□□□ -1.46
NPHP4-205ENST00000466897 PMAIP1Q13794 54 aa5.91□□□□□ -1.46
NPHP4-205ENST00000466897 KRTAP8-1Q8IUC2 63 aa5.91□□□□□ -1.46
NPHP4-205ENST00000466897 BRK1Q8WUW1 75 aa5.91□□□□□ -1.46
NPHP4-205ENST00000466897 KRTAP4-8A0A0G2JLE6 195 aa5.9□□□□□ -1.46
NPHP4-205ENST00000466897 KRTAP4-8Q9BYQ9 185 aa5.9□□□□□ -1.46
NPHP4-205ENST00000466897 NEBP20929 6669 aa5.88□□□□□ -1.47
NPHP4-205ENST00000466897 KRTAP25-1Q3LHN0 102 aa5.82□□□□□ -1.48
NPHP4-205ENST00000466897 MUC12Q9UKN1 5478 aa5.81□□□□□ -1.48
NPHP4-205ENST00000466897 SPRR2FQ96RM1 72 aa5.77□□□□□ -1.49
NPHP4-205ENST00000466897 ROMO1P60602 79 aa5.75□□□□□ -1.49
NPHP4-205ENST00000466897 LCE3AQ5TA76 89 aa5.71□□□□□ -1.5
NPHP4-205ENST00000466897 KTN1-AS1Q86SY8 53 aa5.7□□□□□ -1.5
NPHP4-205ENST00000466897 KRTAP20-1Q3LI63 56 aa5.69□□□□□ -1.5
NPHP4-205ENST00000466897 KRTAP19-7Q3SYF9 63 aa5.69□□□□□ -1.5
NPHP4-205ENST00000466897 KRTAP23-1A1A580 65 aa5.68□□□□□ -1.5
NPHP4-205ENST00000466897 MDN1Q9NU22 5596 aa5.66□□□□□ -1.5
NPHP4-205ENST00000466897 KRTAP19-5Q3LI72 72 aa5.63□□□□□ -1.51
NPHP4-205ENST00000466897 MT1EP04732 61 aa5.61□□□□□ -1.51
NPHP4-205ENST00000466897 SPRR2EP22531 72 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms