RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 KRTAP4-12Q9BQ66 201 aa6.3□□□□□ -1.4
SCLT1-202ENST00000439369 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
SCLT1-202ENST00000439369 DMAC1Q96GE9 116 aa6.27□□□□□ -1.41
SCLT1-202ENST00000439369 CCDC179H3BU77 68 aa6.26□□□□□ -1.41
SCLT1-202ENST00000439369 MT1HP80294 61 aa6.26□□□□□ -1.41
SCLT1-202ENST00000439369 H7BZZ5 65 aa6.25□□□□□ -1.41
SCLT1-202ENST00000439369 KRTAP9-9Q9BYP9 154 aa6.21□□□□□ -1.42
SCLT1-202ENST00000439369 KRTAP9-4Q9BYQ2 154 aa6.21□□□□□ -1.42
SCLT1-202ENST00000439369 CYSTM1Q9H1C7 97 aa6.21□□□□□ -1.42
SCLT1-202ENST00000439369 ACYP2P14621 99 aa6.2□□□□□ -1.42
SCLT1-202ENST00000439369 S4R3F8 94 aa6.2□□□□□ -1.42
SCLT1-202ENST00000439369 FAT4Q6V0I7 4981 aa6.19□□□□□ -1.42
SCLT1-202ENST00000439369 KRTAP4-8A0A0G2JLE6 195 aa6.17□□□□□ -1.42
SCLT1-202ENST00000439369 M0R2T5 61 aa6.17□□□□□ -1.42
SCLT1-202ENST00000439369 ATP5EP56381 51 aaPredicted RBP6.15□□□□□ -1.42
SCLT1-202ENST00000439369 LCA10Q71F78 164 aa6.15□□□□□ -1.42
SCLT1-202ENST00000439369 PCP4P48539 62 aa6.13□□□□□ -1.43
SCLT1-202ENST00000439369 TMEM258P61165 79 aa6.13□□□□□ -1.43
SCLT1-202ENST00000439369 FLGP20930 4061 aaPredicted RBP6.12□□□□□ -1.43
SCLT1-202ENST00000439369 CSAG1Q6PB30 78 aa6.12□□□□□ -1.43
SCLT1-202ENST00000439369 KRTAP19-1Q8IUB9 90 aa6.12□□□□□ -1.43
SCLT1-202ENST00000439369 KRTAP10-6P60371 365 aaPredicted RBP6.08□□□□□ -1.44
SCLT1-202ENST00000439369 SPTSSBQ8NFR3 76 aa6.08□□□□□ -1.44
SCLT1-202ENST00000439369 CHKB-CPT1BH3BT56 60 aa6.07□□□□□ -1.44
SCLT1-202ENST00000439369 COA5Q86WW8 74 aa6.05□□□□□ -1.44
SCLT1-202ENST00000439369 H3BS24 57 aa6.02□□□□□ -1.45
SCLT1-202ENST00000439369 H0YAA0 97 aa6□□□□□ -1.45
SCLT1-202ENST00000439369 KRTAP9-8Q9BYQ0 159 aa5.99□□□□□ -1.45
SCLT1-202ENST00000439369 KRTAP4-7Q9BYR0 210 aa5.97□□□□□ -1.45
SCLT1-202ENST00000439369 MT2AP02795 61 aa5.95□□□□□ -1.46
SCLT1-202ENST00000439369 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
SCLT1-202ENST00000439369 SERP1Q9Y6X1 66 aa5.93□□□□□ -1.46
SCLT1-202ENST00000439369 MT1FP04733 61 aa5.89□□□□□ -1.47
SCLT1-202ENST00000439369 KRTAP10-10P60014 251 aa5.89□□□□□ -1.47
SCLT1-202ENST00000439369 ADM2Q7Z4H4 148 aa5.87□□□□□ -1.47
SCLT1-202ENST00000439369 CRIPTQ9P021 101 aa5.85□□□□□ -1.47
SCLT1-202ENST00000439369 RPS28P62857 69 aaKnown RBP5.82□□□□□ -1.48
SCLT1-202ENST00000439369 SEC61GP60059 68 aa5.81□□□□□ -1.48
SCLT1-202ENST00000439369 KRTAP9-3Q9BYQ3 159 aa5.79□□□□□ -1.48
SCLT1-202ENST00000439369 KRTAP4-9Q9BYQ8 210 aa5.79□□□□□ -1.48
SCLT1-202ENST00000439369 P0C880 135 aa5.78□□□□□ -1.48
SCLT1-202ENST00000439369 SPRR2GQ9BYE4 73 aa5.75□□□□□ -1.49
SCLT1-202ENST00000439369 LINC01558Q9Y6Z2 57 aa5.75□□□□□ -1.49
SCLT1-202ENST00000439369 SMIM26A0A096LP01 95 aa5.74□□□□□ -1.49
SCLT1-202ENST00000439369 A0A1B0GU69 56 aa5.74□□□□□ -1.49
SCLT1-202ENST00000439369 PRR15LQ9BU68 103 aa5.73□□□□□ -1.49
SCLT1-202ENST00000439369 V9GYY9 64 aa5.73□□□□□ -1.49
SCLT1-202ENST00000439369 KRTAP4-2Q9BYR5 136 aa5.71□□□□□ -1.5
SCLT1-202ENST00000439369 R4GN34 69 aa5.71□□□□□ -1.5
SCLT1-202ENST00000439369 M0QZ58 72 aa5.7□□□□□ -1.5
SCLT1-202ENST00000439369 Q1T7F1 81 aa5.68□□□□□ -1.5
SCLT1-202ENST00000439369 A0A1B0GU33 70 aa5.65□□□□□ -1.5
SCLT1-202ENST00000439369 KRTAP19-8Q3LI54 63 aa5.64□□□□□ -1.51
SCLT1-202ENST00000439369 Q5VV11 94 aa5.64□□□□□ -1.51
SCLT1-202ENST00000439369 KRTAP13-4Q3LI77 160 aa5.57□□□□□ -1.52
SCLT1-202ENST00000439369 A6NN06 94 aa5.55□□□□□ -1.52
SCLT1-202ENST00000439369 SVIPQ8NHG7 77 aa5.55□□□□□ -1.52
SCLT1-202ENST00000439369 KRTAP4-11Q9BYQ6 195 aa5.55□□□□□ -1.52
SCLT1-202ENST00000439369 UQCR11O14957 56 aa5.54□□□□□ -1.52
SCLT1-202ENST00000439369 MT1BP07438 61 aa5.54□□□□□ -1.52
SCLT1-202ENST00000439369 PSPHP1O15172 72 aa5.53□□□□□ -1.52
SCLT1-202ENST00000439369 LINC01554Q52M75 96 aa5.53□□□□□ -1.52
SCLT1-202ENST00000439369 SPATA8Q6RVD6 105 aa5.51□□□□□ -1.53
SCLT1-202ENST00000439369 LCE4AQ5TA78 99 aa5.48□□□□□ -1.53
SCLT1-202ENST00000439369 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
SCLT1-202ENST00000439369 USH2AO75445 5202 aa5.44□□□□□ -1.54
SCLT1-202ENST00000439369 A0A0D9SG42 100 aa5.43□□□□□ -1.54
SCLT1-202ENST00000439369 MIR22HGQ0VDD5 57 aa5.43□□□□□ -1.54
SCLT1-202ENST00000439369 KRTAP19-6Q3LI70 58 aa5.43□□□□□ -1.54
SCLT1-202ENST00000439369 CRCT1Q9UGL9 99 aa5.43□□□□□ -1.54
SCLT1-202ENST00000439369 A6NED7 52 aa5.4□□□□□ -1.54
SCLT1-202ENST00000439369 A8MU10 97 aa5.39□□□□□ -1.55
SCLT1-202ENST00000439369 KRTAP12-1P59990 96 aa5.38□□□□□ -1.55
SCLT1-202ENST00000439369 KRTAP10-5P60370 271 aa5.35□□□□□ -1.55
SCLT1-202ENST00000439369 PRO2289Q9P1D8 64 aa5.35□□□□□ -1.55
SCLT1-202ENST00000439369 SPINT4Q6UDR6 99 aa5.34□□□□□ -1.55
SCLT1-202ENST00000439369 KRTAP12-2P59991 146 aa5.32□□□□□ -1.56
SCLT1-202ENST00000439369 LCE5AQ5TCM9 118 aa5.32□□□□□ -1.56
SCLT1-202ENST00000439369 CAMK2N1Q7Z7J9 78 aa5.31□□□□□ -1.56
SCLT1-202ENST00000439369 MT1XP80297 61 aa5.3□□□□□ -1.56
SCLT1-202ENST00000439369 KRTAP9-7A8MTY7 169 aa5.29□□□□□ -1.56
SCLT1-202ENST00000439369 K7ERS5 55 aa5.29□□□□□ -1.56
SCLT1-202ENST00000439369 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
SCLT1-202ENST00000439369 SSPOA2VEC9 5147 aa5.28□□□□□ -1.56
SCLT1-202ENST00000439369 KRTAP19-4Q3LI73 84 aa5.28□□□□□ -1.56
SCLT1-202ENST00000439369 FSIP2Q5CZC0 6907 aa5.25□□□□□ -1.57
SCLT1-202ENST00000439369 KRTAP5-3Q6L8H2 238 aa5.23□□□□□ -1.57
SCLT1-202ENST00000439369 FCGBPQ9Y6R7 5405 aaPredicted RBP5.17□□□□□ -1.58
SCLT1-202ENST00000439369 BRK1Q8WUW1 75 aa5.12□□□□□ -1.59
SCLT1-202ENST00000439369 C10orf95Q9H7T3 257 aa5.08□□□□□ -1.6
SCLT1-202ENST00000439369 KRTAP10-12P60413 245 aa5.06□□□□□ -1.6
SCLT1-202ENST00000439369 TNP1P09430 55 aa5.03□□□□□ -1.6
SCLT1-202ENST00000439369 KRTAP10-7P60409 375 aaPredicted RBP5.03□□□□□ -1.6
SCLT1-202ENST00000439369 KRTAP25-1Q3LHN0 102 aa4.99□□□□□ -1.61
SCLT1-202ENST00000439369 ROMO1P60602 79 aa4.98□□□□□ -1.61
SCLT1-202ENST00000439369 PRO0628Q9UI54 55 aa4.91□□□□□ -1.62
SCLT1-202ENST00000439369 KRTAP8-1Q8IUC2 63 aa4.89□□□□□ -1.63
SCLT1-202ENST00000439369 KRTAP6-3Q3LI67 103 aa4.88□□□□□ -1.63
SCLT1-202ENST00000439369 KRTAP23-1A1A580 65 aa4.87□□□□□ -1.63
SCLT1-202ENST00000439369 PMAIP1Q13794 54 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms