RNA–Protein interactions for RNA: ENST00000392981.6

XRN1-202, Transcript of 5'-3' exoribonuclease 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene XRN1, Length 5,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-202ENST00000392981 CHD8Q9HCK8 2581 aa1.83□□□□□ -2.12
XRN1-202ENST00000392981 MTORP42345 2549 aa1.83□□□□□ -2.12
XRN1-202ENST00000392981 KRTAP19-1Q8IUB9 90 aa1.82□□□□□ -2.12
XRN1-202ENST00000392981 BAHCC1Q9P281 2608 aa1.82□□□□□ -2.12
XRN1-202ENST00000392981 LINC00472Q9H8W2 130 aa1.82□□□□□ -2.12
XRN1-202ENST00000392981 A0A087WTM6 91 aa1.82□□□□□ -2.12
XRN1-202ENST00000392981 MAST4O15021 2626 aa1.81□□□□□ -2.12
XRN1-202ENST00000392981 NBEAL1Q6ZS30 2694 aa1.81□□□□□ -2.12
XRN1-202ENST00000392981 LCE3BQ5TA77 95 aa1.81□□□□□ -2.12
XRN1-202ENST00000392981 NSD1Q96L73 2696 aaPredicted RBP1.81□□□□□ -2.12
XRN1-202ENST00000392981 LRP1BQ9NZR2 4599 aa1.8□□□□□ -2.12
XRN1-202ENST00000392981 C10orf95Q9H7T3 257 aa1.8□□□□□ -2.12
XRN1-202ENST00000392981 KRTAP9-3Q9BYQ3 159 aa1.8□□□□□ -2.12
XRN1-202ENST00000392981 MMP24-AS1A0A0U1RRL7 71 aa1.79□□□□□ -2.12
XRN1-202ENST00000392981 JMJD1CQ15652 2540 aa1.79□□□□□ -2.12
XRN1-202ENST00000392981 KRTAP9-9Q9BYP9 154 aa1.79□□□□□ -2.12
XRN1-202ENST00000392981 TENM3Q9P273 2699 aa1.78□□□□□ -2.12
XRN1-202ENST00000392981 ABCA12Q86UK0 2595 aa1.78□□□□□ -2.12
XRN1-202ENST00000392981 APOBP04114 4563 aaKnown RBP1.77□□□□□ -2.13
XRN1-202ENST00000392981 MUC2Q02817 5179 aa1.77□□□□□ -2.13
XRN1-202ENST00000392981 SMR3BP02814 79 aaPredicted RBP1.77□□□□□ -2.13
XRN1-202ENST00000392981 USP9YO00507 2555 aaPredicted RBP1.77□□□□□ -2.13
XRN1-202ENST00000392981 NBEAL2Q6ZNJ1 2754 aa1.76□□□□□ -2.13
XRN1-202ENST00000392981 FLNBO75369 2602 aaKnown RBP1.76□□□□□ -2.13
XRN1-202ENST00000392981 TNP1P09430 55 aa1.76□□□□□ -2.13
XRN1-202ENST00000392981 LCE3CQ5T5A8 94 aa1.75□□□□□ -2.13
XRN1-202ENST00000392981 SMR3AQ99954 134 aa1.75□□□□□ -2.13
XRN1-202ENST00000392981 KRTAP1-5Q9BYS1 174 aa1.75□□□□□ -2.13
XRN1-202ENST00000392981 DYNC1H1Q14204 4646 aaKnown RBP1.74□□□□□ -2.13
XRN1-202ENST00000392981 FASNP49327 2511 aaKnown RBP1.74□□□□□ -2.13
XRN1-202ENST00000392981 SRRM2Q9UQ35 2752 aaKnown RBP1.73□□□□□ -2.13
XRN1-202ENST00000392981 TEP1Q99973 2627 aaKnown RBP1.73□□□□□ -2.13
XRN1-202ENST00000392981 HERC1Q15751 4861 aa1.73□□□□□ -2.13
XRN1-202ENST00000392981 KRTAP12-1P59990 96 aa1.72□□□□□ -2.13
XRN1-202ENST00000392981 KRTAP5-2Q701N4 177 aa1.72□□□□□ -2.13
XRN1-202ENST00000392981 STAB2Q8WWQ8 2551 aa1.72□□□□□ -2.13
XRN1-202ENST00000392981 SETD2Q9BYW2 2564 aaPredicted RBP1.72□□□□□ -2.13
XRN1-202ENST00000392981 LRP1Q07954 4544 aaKnown RBP1.71□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP12-2P59991 146 aa1.71□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP13-4Q3LI77 160 aa1.71□□□□□ -2.14
XRN1-202ENST00000392981 LCE1FQ5T754 118 aa1.71□□□□□ -2.14
XRN1-202ENST00000392981 SPRR1BP22528 89 aa1.7□□□□□ -2.14
XRN1-202ENST00000392981 LCE1AQ5T7P2 110 aa1.7□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP10-9P60411 292 aa1.7□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP5-3Q6L8H2 238 aa1.7□□□□□ -2.14
XRN1-202ENST00000392981 FLGP20930 4061 aaPredicted RBP1.69□□□□□ -2.14
XRN1-202ENST00000392981 ANKRD17O75179 2603 aaKnown RBP1.69□□□□□ -2.14
XRN1-202ENST00000392981 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP4-12Q9BQ66 201 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 K7EIL1 84 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 SPRR1AP35321 89 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 Q5VSD8 79 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP9-8Q9BYQ0 159 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 IGF2RP11717 2491 aa1.68□□□□□ -2.14
XRN1-202ENST00000392981 H0YAA0 97 aa1.67□□□□□ -2.14
XRN1-202ENST00000392981 FAT1Q14517 4588 aa1.67□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP10-12P60413 245 aa1.66□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP10-8P60410 259 aa1.66□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
XRN1-202ENST00000392981 KRTAP1-3Q8IUG1 177 aa1.64□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP4-8Q9BYQ9 185 aa1.64□□□□□ -2.15
XRN1-202ENST00000392981 HERC2O95714 4834 aa1.64□□□□□ -2.15
XRN1-202ENST00000392981 STAB1Q9NY15 2570 aa1.64□□□□□ -2.15
XRN1-202ENST00000392981 MGAM2Q2M2H8 2515 aa1.63□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP9-2Q9BYQ4 174 aa1.62□□□□□ -2.15
XRN1-202ENST00000392981 KIAA1109Q2LD37 5005 aa1.62□□□□□ -2.15
XRN1-202ENST00000392981 MUC17Q685J3 4493 aa1.62□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP2-2Q9BYT5 123 aa1.62□□□□□ -2.15
XRN1-202ENST00000392981 RNF213Q63HN8 5207 aa1.61□□□□□ -2.15
XRN1-202ENST00000392981 A0A1B0GVY2 172 aa1.61□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP13-3Q3SY46 172 aa1.61□□□□□ -2.15
XRN1-202ENST00000392981 FAT4Q6V0I7 4981 aa1.6□□□□□ -2.15
XRN1-202ENST00000392981 FLNAP21333 2647 aaKnown RBP1.6□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP10-6P60371 365 aaPredicted RBP1.6□□□□□ -2.15
XRN1-202ENST00000392981 LCE3EQ5T5B0 92 aa1.59□□□□□ -2.15
XRN1-202ENST00000392981 ATRQ13535 2644 aa1.59□□□□□ -2.15
XRN1-202ENST00000392981 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.59□□□□□ -2.16
XRN1-202ENST00000392981 KRTAP10-1P60331 282 aa1.59□□□□□ -2.16
XRN1-202ENST00000392981 LRP2P98164 4655 aa1.59□□□□□ -2.16
XRN1-202ENST00000392981 HMCN2Q8NDA2 5059 aa1.58□□□□□ -2.16
XRN1-202ENST00000392981 UBR4Q5T4S7 5183 aa1.58□□□□□ -2.16
XRN1-202ENST00000392981 LCE1DQ5T752 114 aa1.58□□□□□ -2.16
XRN1-202ENST00000392981 KRTAP10-3P60369 221 aa1.58□□□□□ -2.16
XRN1-202ENST00000392981 RPS29P62273 56 aaKnown RBP1.57□□□□□ -2.16
XRN1-202ENST00000392981 KRTAP10-7P60409 375 aaPredicted RBP1.55□□□□□ -2.16
XRN1-202ENST00000392981 COL6A5A8TX70 2615 aa1.51□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP4-2Q9BYR5 136 aa1.5□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP12-3P60328 96 aa1.5□□□□□ -2.17
XRN1-202ENST00000392981 SPRR5A0A1B0GTR4 108 aa1.49□□□□□ -2.17
XRN1-202ENST00000392981 NOTCH1P46531 2555 aa1.49□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP1-1Q07627 177 aa1.48□□□□□ -2.17
XRN1-202ENST00000392981 LCE3DQ9BYE3 92 aa1.48□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP10-10P60014 251 aa1.48□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP13-1Q8IUC0 172 aa1.48□□□□□ -2.17
XRN1-202ENST00000392981 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
XRN1-202ENST00000392981 KRTAP4-8A0A0G2JLE6 195 aa1.45□□□□□ -2.18
XRN1-202ENST00000392981 KRTAP5-9P26371 169 aa1.45□□□□□ -2.18
XRN1-202ENST00000392981 KRTAP4-11Q9BYQ6 195 aa1.44□□□□□ -2.18
XRN1-202ENST00000392981 LCE1EQ5T753 118 aa1.44□□□□□ -2.18
XRN1-202ENST00000392981 KRTAP10-5P60370 271 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms