RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 SPAG11AQ6PDA7 123 aa6.09□□□□□ -1.43
RTN3-201ENST00000338850 LCA10Q71F78 164 aa6.09□□□□□ -1.43
RTN3-201ENST00000338850 TNXBP22105 4242 aa6.09□□□□□ -1.44
RTN3-201ENST00000338850 LORP23490 312 aaPredicted RBP6.07□□□□□ -1.44
RTN3-201ENST00000338850 KRTAP9-9Q9BYP9 154 aa6.07□□□□□ -1.44
RTN3-201ENST00000338850 KRTAP9-4Q9BYQ2 154 aa6.07□□□□□ -1.44
RTN3-201ENST00000338850 KRTAP10-8P60410 259 aa6.06□□□□□ -1.44
RTN3-201ENST00000338850 C4orf48Q5BLP8 95 aa6.05□□□□□ -1.44
RTN3-201ENST00000338850 A6NN06 94 aa6.03□□□□□ -1.44
RTN3-201ENST00000338850 LRP2P98164 4655 aa6.03□□□□□ -1.44
RTN3-201ENST00000338850 KTN1-AS1Q86SY8 53 aa6.03□□□□□ -1.44
RTN3-201ENST00000338850 IGKV2D-30A0A075B6S6 120 aa6.01□□□□□ -1.45
RTN3-201ENST00000338850 TYMSOSQ8TAI1 123 aa6.01□□□□□ -1.45
RTN3-201ENST00000338850 A8MU10 97 aa6□□□□□ -1.45
RTN3-201ENST00000338850 SPINK7P58062 85 aa5.98□□□□□ -1.45
RTN3-201ENST00000338850 C7orf65Q6ZTY9 151 aa5.98□□□□□ -1.45
RTN3-201ENST00000338850 RNF213Q63HN8 5207 aa5.97□□□□□ -1.45
RTN3-201ENST00000338850 LINC00304Q8N9R0 145 aa5.97□□□□□ -1.45
RTN3-201ENST00000338850 KRTAP4-12Q9BQ66 201 aa5.97□□□□□ -1.45
RTN3-201ENST00000338850 A0A1B0GU69 56 aa5.95□□□□□ -1.46
RTN3-201ENST00000338850 SPATA8Q6RVD6 105 aa5.95□□□□□ -1.46
RTN3-201ENST00000338850 SPTSSBQ8NFR3 76 aa5.94□□□□□ -1.46
RTN3-201ENST00000338850 KRTAP4-7Q9BYR0 210 aa5.94□□□□□ -1.46
RTN3-201ENST00000338850 C20orf166-AS1Q96NR2 134 aa5.93□□□□□ -1.46
RTN3-201ENST00000338850 A8MUU9 505 aa5.92□□□□□ -1.46
RTN3-201ENST00000338850 SEC61GP60059 68 aa5.91□□□□□ -1.46
RTN3-201ENST00000338850 UQCR11O14957 56 aa5.9□□□□□ -1.46
RTN3-201ENST00000338850 RETNLBQ9BQ08 111 aa5.88□□□□□ -1.47
RTN3-201ENST00000338850 LPAP08519 4548 aa5.85□□□□□ -1.47
RTN3-201ENST00000338850 MIR22HGQ0VDD5 57 aa5.84□□□□□ -1.47
RTN3-201ENST00000338850 RBM12B-AS1Q9P1G2 102 aa5.78□□□□□ -1.48
RTN3-201ENST00000338850 LCE1DQ5T752 114 aa5.76□□□□□ -1.49
RTN3-201ENST00000338850 MUC2Q02817 5179 aa5.71□□□□□ -1.5
RTN3-201ENST00000338850 COX6B2Q6YFQ2 88 aa5.71□□□□□ -1.5
RTN3-201ENST00000338850 KRTAP3-1Q9BYR8 98 aa5.7□□□□□ -1.5
RTN3-201ENST00000338850 KRTAP4-2Q9BYR5 136 aa5.69□□□□□ -1.5
RTN3-201ENST00000338850 C9orf92A6NGG3 77 aa5.67□□□□□ -1.5
RTN3-201ENST00000338850 KRTAP19-1Q8IUB9 90 aa5.67□□□□□ -1.5
RTN3-201ENST00000338850 KRTAP4-9Q9BYQ8 210 aa5.65□□□□□ -1.5
RTN3-201ENST00000338850 TPRXLQ17RH7 258 aa5.64□□□□□ -1.51
RTN3-201ENST00000338850 H1FX-AS1Q4G0G2 97 aa5.64□□□□□ -1.51
RTN3-201ENST00000338850 A0A1B0GU33 70 aa5.63□□□□□ -1.51
RTN3-201ENST00000338850 H0YAA0 97 aa5.63□□□□□ -1.51
RTN3-201ENST00000338850 RPL37P61927 97 aaKnown RBP5.62□□□□□ -1.51
RTN3-201ENST00000338850 MUC17Q685J3 4493 aa5.59□□□□□ -1.51
RTN3-201ENST00000338850 FAT4Q6V0I7 4981 aa5.58□□□□□ -1.52
RTN3-201ENST00000338850 PRAC1Q96KF2 57 aa5.56□□□□□ -1.52
RTN3-201ENST00000338850 LINC01554Q52M75 96 aa5.55□□□□□ -1.52
RTN3-201ENST00000338850 ADM2Q7Z4H4 148 aa5.53□□□□□ -1.52
RTN3-201ENST00000338850 K7ERS5 55 aa5.52□□□□□ -1.53
RTN3-201ENST00000338850 KRTAP5-3Q6L8H2 238 aa5.52□□□□□ -1.53
RTN3-201ENST00000338850 KRTAP10-6P60371 365 aaPredicted RBP5.47□□□□□ -1.53
RTN3-201ENST00000338850 KRTAP4-1Q9BYQ7 146 aa5.47□□□□□ -1.53
RTN3-201ENST00000338850 CSAG1Q6PB30 78 aa5.46□□□□□ -1.54
RTN3-201ENST00000338850 S4R3F8 94 aa5.46□□□□□ -1.54
RTN3-201ENST00000338850 SEC61BP60468 96 aaKnown RBP5.45□□□□□ -1.54
RTN3-201ENST00000338850 KRTAP9-8Q9BYQ0 159 aa5.44□□□□□ -1.54
RTN3-201ENST00000338850 KRTAP25-1Q3LHN0 102 aa5.43□□□□□ -1.54
RTN3-201ENST00000338850 ROMO1P60602 79 aa5.37□□□□□ -1.55
RTN3-201ENST00000338850 KRTAP4-11Q9BYQ6 195 aa5.36□□□□□ -1.55
RTN3-201ENST00000338850 KRTAP19-2Q3LHN2 52 aa5.34□□□□□ -1.55
RTN3-201ENST00000338850 KRTAP13-4Q3LI77 160 aa5.32□□□□□ -1.56
RTN3-201ENST00000338850 M0QZ58 72 aa5.3□□□□□ -1.56
RTN3-201ENST00000338850 MT1HP80294 61 aa5.28□□□□□ -1.56
RTN3-201ENST00000338850 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
RTN3-201ENST00000338850 P0C880 135 aa5.26□□□□□ -1.57
RTN3-201ENST00000338850 CRCT1Q9UGL9 99 aa5.25□□□□□ -1.57
RTN3-201ENST00000338850 KRTAP12-1P59990 96 aa5.19□□□□□ -1.58
RTN3-201ENST00000338850 A0A0D9SG42 100 aa5.18□□□□□ -1.58
RTN3-201ENST00000338850 KRTAP12-2P59991 146 aa5.16□□□□□ -1.58
RTN3-201ENST00000338850 M0R2T5 61 aa5.15□□□□□ -1.59
RTN3-201ENST00000338850 FLGP20930 4061 aaPredicted RBP5.12□□□□□ -1.59
RTN3-201ENST00000338850 CRIPTQ9P021 101 aa5.11□□□□□ -1.59
RTN3-201ENST00000338850 SPINT4Q6UDR6 99 aa5.05□□□□□ -1.6
RTN3-201ENST00000338850 R4GN34 69 aa5.03□□□□□ -1.6
RTN3-201ENST00000338850 KRTAP9-7A8MTY7 169 aa5□□□□□ -1.61
RTN3-201ENST00000338850 C10orf95Q9H7T3 257 aa4.97□□□□□ -1.61
RTN3-201ENST00000338850 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
RTN3-201ENST00000338850 USH2AO75445 5202 aa4.93□□□□□ -1.62
RTN3-201ENST00000338850 H3BS24 57 aa4.91□□□□□ -1.62
RTN3-201ENST00000338850 MT2AP02795 61 aa4.91□□□□□ -1.62
RTN3-201ENST00000338850 SSPOA2VEC9 5147 aa4.9□□□□□ -1.63
RTN3-201ENST00000338850 PP632Q6XCG6 107 aa4.89□□□□□ -1.63
RTN3-201ENST00000338850 MT1FP04733 61 aa4.87□□□□□ -1.63
RTN3-201ENST00000338850 LCE4AQ5TA78 99 aa4.86□□□□□ -1.63
RTN3-201ENST00000338850 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
RTN3-201ENST00000338850 KRTAP9-3Q9BYQ3 159 aa4.83□□□□□ -1.64
RTN3-201ENST00000338850 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
RTN3-201ENST00000338850 KRTAP10-10P60014 251 aa4.82□□□□□ -1.64
RTN3-201ENST00000338850 FCGBPQ9Y6R7 5405 aaPredicted RBP4.82□□□□□ -1.64
RTN3-201ENST00000338850 CAMK2N1Q7Z7J9 78 aa4.74□□□□□ -1.65
RTN3-201ENST00000338850 PLAC4Q8WY50 150 aa4.71□□□□□ -1.66
RTN3-201ENST00000338850 NDUFAF8A1L188 74 aa4.68□□□□□ -1.66
RTN3-201ENST00000338850 KRTAP19-6Q3LI70 58 aa4.68□□□□□ -1.66
RTN3-201ENST00000338850 TNP1P09430 55 aa4.67□□□□□ -1.66
RTN3-201ENST00000338850 SPRR2GQ9BYE4 73 aa4.67□□□□□ -1.66
RTN3-201ENST00000338850 MACF1Q9UPN3 7388 aaKnown RBP4.65□□□□□ -1.66
RTN3-201ENST00000338850 SYNE2Q8WXH0 6885 aaKnown RBP4.65□□□□□ -1.66
RTN3-201ENST00000338850 SPRR5A0A1B0GTR4 108 aa4.55□□□□□ -1.68
RTN3-201ENST00000338850 KRTAP6-3Q3LI67 103 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 309.6 ms