RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 C20orf197Q8N268 126 aa4.66□□□□□ -1.66
RFX3-201ENST00000302303 FAM236DA0A1B0GTK5 79 aa4.65□□□□□ -1.67
RFX3-201ENST00000302303 FAM236CP0DP71 79 aa4.65□□□□□ -1.67
RFX3-201ENST00000302303 H1FX-AS1Q4G0G2 97 aa4.65□□□□□ -1.67
RFX3-201ENST00000302303 LCE3BQ5TA77 95 aa4.65□□□□□ -1.67
RFX3-201ENST00000302303 CYSTM1Q9H1C7 97 aa4.64□□□□□ -1.67
RFX3-201ENST00000302303 ANAPC13Q9BS18 74 aa4.62□□□□□ -1.67
RFX3-201ENST00000302303 KRTAP4-8A0A0G2JLE6 195 aa4.6□□□□□ -1.67
RFX3-201ENST00000302303 CCDC179H3BU77 68 aa4.59□□□□□ -1.67
RFX3-201ENST00000302303 KRTAP10-6P60371 365 aaPredicted RBP4.58□□□□□ -1.68
RFX3-201ENST00000302303 A0A0A0MQY5 61 aa4.57□□□□□ -1.68
RFX3-201ENST00000302303 DMAC1Q96GE9 116 aa4.57□□□□□ -1.68
RFX3-201ENST00000302303 H7BZZ5 65 aa4.56□□□□□ -1.68
RFX3-201ENST00000302303 LCA10Q71F78 164 aa4.56□□□□□ -1.68
RFX3-201ENST00000302303 A8MUN3 132 aa4.56□□□□□ -1.68
RFX3-201ENST00000302303 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
RFX3-201ENST00000302303 M0R2T5 61 aa4.54□□□□□ -1.68
RFX3-201ENST00000302303 SPANXA2-OT1Q8N9U9 137 aa4.54□□□□□ -1.68
RFX3-201ENST00000302303 S4R3F8 94 aa4.53□□□□□ -1.68
RFX3-201ENST00000302303 KRTAP9-9Q9BYP9 154 aa4.52□□□□□ -1.69
RFX3-201ENST00000302303 KRTAP9-4Q9BYQ2 154 aa4.52□□□□□ -1.69
RFX3-201ENST00000302303 NDUFC1O43677 76 aa4.51□□□□□ -1.69
RFX3-201ENST00000302303 KRTAP4-12Q9BQ66 201 aa4.51□□□□□ -1.69
RFX3-201ENST00000302303 KRTAP4-7Q9BYR0 210 aa4.5□□□□□ -1.69
RFX3-201ENST00000302303 MT2AP02795 61 aa4.49□□□□□ -1.69
RFX3-201ENST00000302303 ACYP2P14621 99 aa4.47□□□□□ -1.69
RFX3-201ENST00000302303 MT1FP04733 61 aa4.46□□□□□ -1.69
RFX3-201ENST00000302303 CSAG1Q6PB30 78 aa4.46□□□□□ -1.7
RFX3-201ENST00000302303 KRTAP5-3Q6L8H2 238 aa4.41□□□□□ -1.7
RFX3-201ENST00000302303 COA5Q86WW8 74 aa4.4□□□□□ -1.71
RFX3-201ENST00000302303 KRTAP19-1Q8IUB9 90 aa4.4□□□□□ -1.71
RFX3-201ENST00000302303 KRTAP9-3Q9BYQ3 159 aa4.4□□□□□ -1.71
RFX3-201ENST00000302303 KRTAP10-10P60014 251 aa4.38□□□□□ -1.71
RFX3-201ENST00000302303 H0YAA0 97 aa4.37□□□□□ -1.71
RFX3-201ENST00000302303 TMEM258P61165 79 aa4.36□□□□□ -1.71
RFX3-201ENST00000302303 CHKB-CPT1BH3BT56 60 aa4.34□□□□□ -1.71
RFX3-201ENST00000302303 ATP5EP56381 51 aaPredicted RBP4.34□□□□□ -1.71
RFX3-201ENST00000302303 LCE1DQ5T752 114 aa4.34□□□□□ -1.71
RFX3-201ENST00000302303 ADM2Q7Z4H4 148 aa4.32□□□□□ -1.72
RFX3-201ENST00000302303 P0C880 135 aa4.31□□□□□ -1.72
RFX3-201ENST00000302303 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
RFX3-201ENST00000302303 SPTSSBQ8NFR3 76 aa4.3□□□□□ -1.72
RFX3-201ENST00000302303 SPRR2GQ9BYE4 73 aa4.28□□□□□ -1.72
RFX3-201ENST00000302303 KRTAP9-7A8MTY7 169 aa4.26□□□□□ -1.73
RFX3-201ENST00000302303 KRTAP4-9Q9BYQ8 210 aa4.26□□□□□ -1.73
RFX3-201ENST00000302303 SERP1Q9Y6X1 66 aa4.24□□□□□ -1.73
RFX3-201ENST00000302303 USH2AO75445 5202 aa4.24□□□□□ -1.73
RFX3-201ENST00000302303 KRTAP15-1Q3LI76 137 aa4.23□□□□□ -1.73
RFX3-201ENST00000302303 LCE4AQ5TA78 99 aa4.23□□□□□ -1.73
RFX3-201ENST00000302303 CRIPTQ9P021 101 aa4.23□□□□□ -1.73
RFX3-201ENST00000302303 FSIP2Q5CZC0 6907 aa4.21□□□□□ -1.73
RFX3-201ENST00000302303 KRTAP19-8Q3LI54 63 aa4.21□□□□□ -1.73
RFX3-201ENST00000302303 MT1BP07438 61 aa4.2□□□□□ -1.74
RFX3-201ENST00000302303 KRTAP13-4Q3LI77 160 aa4.18□□□□□ -1.74
RFX3-201ENST00000302303 LINC01558Q9Y6Z2 57 aa4.17□□□□□ -1.74
RFX3-201ENST00000302303 RPS28P62857 69 aaKnown RBP4.16□□□□□ -1.74
RFX3-201ENST00000302303 M0QZ58 72 aa4.15□□□□□ -1.75
RFX3-201ENST00000302303 R4GN34 69 aa4.15□□□□□ -1.75
RFX3-201ENST00000302303 SSPOA2VEC9 5147 aa4.14□□□□□ -1.75
RFX3-201ENST00000302303 A0A1B0GU69 56 aa4.12□□□□□ -1.75
RFX3-201ENST00000302303 SEC61GP60059 68 aa4.12□□□□□ -1.75
RFX3-201ENST00000302303 CRCT1Q9UGL9 99 aa4.11□□□□□ -1.75
RFX3-201ENST00000302303 A0A1B0GU33 70 aa4.1□□□□□ -1.75
RFX3-201ENST00000302303 Q1T7F1 81 aa4.1□□□□□ -1.75
RFX3-201ENST00000302303 Q5VV11 94 aa4.1□□□□□ -1.75
RFX3-201ENST00000302303 SMIM26A0A096LP01 95 aa4.09□□□□□ -1.75
RFX3-201ENST00000302303 KRTAP19-6Q3LI70 58 aa4.08□□□□□ -1.76
RFX3-201ENST00000302303 SPATA8Q6RVD6 105 aa4.08□□□□□ -1.76
RFX3-201ENST00000302303 LINC01554Q52M75 96 aa4.05□□□□□ -1.76
RFX3-201ENST00000302303 PRR15LQ9BU68 103 aa4.04□□□□□ -1.76
RFX3-201ENST00000302303 KRTAP4-11Q9BYQ6 195 aa4.04□□□□□ -1.76
RFX3-201ENST00000302303 V9GYY9 64 aa4.03□□□□□ -1.76
RFX3-201ENST00000302303 A6NN06 94 aa4.02□□□□□ -1.77
RFX3-201ENST00000302303 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
RFX3-201ENST00000302303 PSPHP1O15172 72 aa4.01□□□□□ -1.77
RFX3-201ENST00000302303 A8MU10 97 aa4□□□□□ -1.77
RFX3-201ENST00000302303 KRTAP10-5P60370 271 aa4□□□□□ -1.77
RFX3-201ENST00000302303 MT1XP80297 61 aa4□□□□□ -1.77
RFX3-201ENST00000302303 A0A0D9SG42 100 aa3.98□□□□□ -1.77
RFX3-201ENST00000302303 KRTAP12-1P59990 96 aa3.98□□□□□ -1.77
RFX3-201ENST00000302303 PLAC4Q8WY50 150 aa3.98□□□□□ -1.77
RFX3-201ENST00000302303 UQCR11O14957 56 aa3.96□□□□□ -1.78
RFX3-201ENST00000302303 KRTAP12-2P59991 146 aa3.95□□□□□ -1.78
RFX3-201ENST00000302303 LCE5AQ5TCM9 118 aa3.92□□□□□ -1.78
RFX3-201ENST00000302303 MIR22HGQ0VDD5 57 aa3.9□□□□□ -1.78
RFX3-201ENST00000302303 SPINT4Q6UDR6 99 aa3.89□□□□□ -1.79
RFX3-201ENST00000302303 MACF1Q9UPN3 7388 aaKnown RBP3.87□□□□□ -1.79
RFX3-201ENST00000302303 A6NED7 52 aa3.85□□□□□ -1.79
RFX3-201ENST00000302303 PRO2289Q9P1D8 64 aa3.85□□□□□ -1.79
RFX3-201ENST00000302303 CAMK2N1Q7Z7J9 78 aa3.83□□□□□ -1.8
RFX3-201ENST00000302303 KRTAP10-7P60409 375 aaPredicted RBP3.82□□□□□ -1.8
RFX3-201ENST00000302303 PRAC1Q96KF2 57 aa3.8□□□□□ -1.8
RFX3-201ENST00000302303 C10orf95Q9H7T3 257 aa3.8□□□□□ -1.8
RFX3-201ENST00000302303 KRTAP10-12P60413 245 aa3.79□□□□□ -1.8
RFX3-201ENST00000302303 CDC42SE1Q9NRR8 79 aa3.79□□□□□ -1.8
RFX3-201ENST00000302303 KMT2DO14686 5537 aa3.76□□□□□ -1.81
RFX3-201ENST00000302303 SYNE2Q8WXH0 6885 aaKnown RBP3.75□□□□□ -1.81
RFX3-201ENST00000302303 K7ERS5 55 aa3.69□□□□□ -1.82
RFX3-201ENST00000302303 KRTAP6-3Q3LI67 103 aa3.66□□□□□ -1.82
RFX3-201ENST00000302303 KRTAP5-9P26371 169 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms