RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 OVOL2Q9BRP0 275 aa5.91□□□□□ -1.46
VAMP3-201ENST00000054666 NOTCH3Q9UM47 2321 aa5.9□□□□□ -1.46
VAMP3-201ENST00000054666 TRBV6-4A0A1B0GX49 114 aa5.9□□□□□ -1.46
VAMP3-201ENST00000054666 UBE2D1P51668 147 aa5.9□□□□□ -1.46
VAMP3-201ENST00000054666 LYRM7Q5U5X0 104 aa5.9□□□□□ -1.46
VAMP3-201ENST00000054666 PGPEP1Q9NXJ5 209 aa5.9□□□□□ -1.46
VAMP3-201ENST00000054666 APOMO95445 188 aa5.9□□□□□ -1.47
VAMP3-201ENST00000054666 IGHV3-30P01768 117 aa5.9□□□□□ -1.47
VAMP3-201ENST00000054666 IGHV3-30-5P0DP03 117 aa5.9□□□□□ -1.47
VAMP3-201ENST00000054666 JMJD1CQ15652 2540 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 K7ERU9 68 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 HERVK_113P63121 156 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 RPL24P83731 157 aaKnown RBP5.89□□□□□ -1.47
VAMP3-201ENST00000054666 TMEM101Q96IK0 257 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 TMEM243Q9BU79 118 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 CSDC2Q9Y534 153 aaKnown RBP5.89□□□□□ -1.47
VAMP3-201ENST00000054666 HECTD1Q9ULT8 2610 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 TRAV8-3A0A0A6YYJ7 113 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 CRLF1O75462 422 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 SPINK8P0C7L1 97 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 FOSL1P15407 271 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 TIRAPP58753 221 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 OCIAD2Q56VL3 154 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 VSIG2Q96IQ7 327 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 GTSF1LQ9H1H1 148 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 NDUFA12Q9UI09 145 aa5.89□□□□□ -1.47
VAMP3-201ENST00000054666 NOTCH2Q04721 2471 aa5.88□□□□□ -1.47
VAMP3-201ENST00000054666 A0A0J9YXY3 114 aa5.88□□□□□ -1.47
VAMP3-201ENST00000054666 C10orf126Q8N4M7 172 aa5.88□□□□□ -1.47
VAMP3-201ENST00000054666 IGLV5-45A0A087WSX0 123 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 LINC00694P0DN24 101 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 NTM-AS1Q6ZSK4 140 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 SETXQ7Z333 2677 aaKnown RBP5.87□□□□□ -1.47
VAMP3-201ENST00000054666 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.87□□□□□ -1.47
VAMP3-201ENST00000054666 H7C423 109 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 TSPAN13O95857 204 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 ZFAND6Q6FIF0 208 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 SBSPONQ8IVN8 264 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 KIR2DL5BQ8NHK3 375 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 CDKN2A-AS1Q9UH64 79 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 CBY1Q9Y3M2 126 aa5.87□□□□□ -1.47
VAMP3-201ENST00000054666 GCN1Q92616 2671 aaKnown RBP5.86□□□□□ -1.47
VAMP3-201ENST00000054666 C2CD3Q4AC94 2353 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 TRAV13-1A0A0B4J241 112 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 LOC100131303A0A0U1RQF7 123 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 SMIM9A6NGZ8 99 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 DEFB130BP0DP73 79 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 DEFB130AP0DP74 79 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 RNF151Q2KHN1 245 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 LOC107984156A0A0G2JMH3 177 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 A4D1N5 150 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 CFC1BP0CG36 223 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 CFC1P0CG37 223 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 APOC4P55056 127 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 FHL2Q14192 279 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 ARL17AQ8IVW1 177 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 CDC42SE2Q9NRR3 84 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 PRO1854Q9UHT4 67 aa5.86□□□□□ -1.47
VAMP3-201ENST00000054666 A0A0B4J2C4 111 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 F8W1H4 67 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 H3BMG7 143 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 LINC00242Q5T6M2 205 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 FAM19A3Q7Z5A8 133 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 MUSTN1Q8IVN3 82 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.85□□□□□ -1.47
VAMP3-201ENST00000054666 CITED1Q99966 193 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 SPANXDQ9BXN6 97 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 SPANXCQ9NY87 97 aa5.85□□□□□ -1.47
VAMP3-201ENST00000054666 NDUFA1O15239 70 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 RBX1P62877 108 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 TRBV6-8A0A0A6YYG3 113 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 A8MZ25 164 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 TIMM17BO60830 172 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 PRSS2P07478 247 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 CIRBPQ14011 172 aaKnown RBP5.84□□□□□ -1.47
VAMP3-201ENST00000054666 MIAQ16674 131 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 LINC00612Q8N6U2 182 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 VPS25Q9BRG1 176 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 CHCHD5Q9BSY4 110 aa5.84□□□□□ -1.47
VAMP3-201ENST00000054666 FN1P02751 2386 aaKnown RBP5.84□□□□□ -1.48
VAMP3-201ENST00000054666 LYRM9A8MSI8 78 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 COX6A2Q02221 97 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 GAGE6Q13070 117 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 Q1RN00 199 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 SFTA2Q6UW10 78 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 LITAFQ99732 161 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 X6R8D5 127 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 IGLV5-39A0A0G2JS06 123 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 SMIM1B2RUZ4 78 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 SCGB1C2P0DMR2 95 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 PSMB2P49721 201 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 DEFB135Q30KP9 77 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 ERG28Q9UKR5 140 aa5.83□□□□□ -1.48
VAMP3-201ENST00000054666 TRBV20-1A0A075B6N2 111 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 GYPEP15421 78 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 SPATA3Q8NHX4 192 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 COPS9Q8WXC6 57 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 Q9H8V8 135 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 PRO0255Q9UI72 69 aa5.82□□□□□ -1.48
VAMP3-201ENST00000054666 NSD1Q96L73 2696 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms