RNA–Protein interactions for RNA: YML031W

NDC1, Transcript of Subunit of the transmembrane ring of the nuclear pore complex (NPC), yeast

Gene NDC1, Length 1,968 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC1	YML031W	YPR078C	Q06813	372 aa		5.37	□□□□□ -1.55
NDC1	YML031W	AIM39	Q08223	395 aa		5.37	□□□□□ -1.55
NDC1	YML031W	VPS5	Q92331	675 aa		5.37	□□□□□ -1.55
NDC1	YML031W	HFA1	P32874	2273 aa		5.37	□□□□□ -1.55
NDC1	YML031W	CHL1	P22516	861 aa	Predicted RBP	5.36	□□□□□ -1.55
NDC1	YML031W	ERG6	P25087	383 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	DPB3	P27344	201 aa		5.36	□□□□□ -1.55
NDC1	YML031W	STO1	P34160	861 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	RRP1	P35178	278 aa	Predicted RBP	5.36	□□□□□ -1.55
NDC1	YML031W	LAM1	P38851	1228 aa		5.36	□□□□□ -1.55
NDC1	YML031W	LYS9	P38999	446 aa		5.36	□□□□□ -1.55
NDC1	YML031W	YER189W	P40104	122 aa		5.36	□□□□□ -1.55
NDC1	YML031W	DSN1	P40568	576 aa		5.36	□□□□□ -1.55
NDC1	YML031W	SAP185	P40856	1058 aa		5.36	□□□□□ -1.55
NDC1	YML031W	SNZ3	P43545	298 aa		5.36	□□□□□ -1.55
NDC1	YML031W	PEX31	P53203	462 aa		5.36	□□□□□ -1.55
NDC1	YML031W	SNZ2	P53824	298 aa		5.36	□□□□□ -1.55
NDC1	YML031W	ALF1	P53904	254 aa		5.36	□□□□□ -1.55
NDC1	YML031W	DOS2	P54858	310 aa		5.36	□□□□□ -1.55
NDC1	YML031W	SAM4	Q08985	325 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	CWC2	Q12046	339 aa	Predicted RBP	5.36	□□□□□ -1.55
NDC1	YML031W	YLR046C	Q12253	270 aa		5.36	□□□□□ -1.55
NDC1	YML031W	HIS1	P00498	297 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	ENO1	P00924	437 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	MET16	P18408	261 aa	Predicted RBP	5.36	□□□□□ -1.55
NDC1	YML031W	SNF5	P18480	905 aa		5.36	□□□□□ -1.55
NDC1	YML031W	SEC1	P30619	724 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	SLX5	P32828	619 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	SMC1	P32908	1225 aa		5.36	□□□□□ -1.55
NDC1	YML031W	MIP6	P38760	659 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	PRM9	P39551	298 aa		5.36	□□□□□ -1.55
NDC1	YML031W	STL1	P39932	569 aa		5.36	□□□□□ -1.55
NDC1	YML031W	NDC80	P40460	691 aa		5.36	□□□□□ -1.55
NDC1	YML031W	TMA108	P40462	946 aa		5.36	□□□□□ -1.55
NDC1	YML031W	CNN1	P43618	361 aa		5.36	□□□□□ -1.55
NDC1	YML031W	MAL13	P53338	473 aa		5.36	□□□□□ -1.55
NDC1	YML031W	ADI1	Q03677	179 aa		5.36	□□□□□ -1.55
NDC1	YML031W	ARA2	Q04212	335 aa		5.36	□□□□□ -1.55
NDC1	YML031W	VPS38	Q05919	439 aa		5.36	□□□□□ -1.55
NDC1	YML031W	YOR059C	Q08448	450 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	RPN8	Q08723	338 aa	Known RBP	5.36	□□□□□ -1.55
NDC1	YML031W	GCN1	P33892	2672 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	PRP8	P33334	2413 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	BI2	P03873	423 aa		5.35	□□□□□ -1.55
NDC1	YML031W	GEX1	P25596	615 aa		5.35	□□□□□ -1.55
NDC1	YML031W	GEX2	P36173	615 aa		5.35	□□□□□ -1.55
NDC1	YML031W	EXO5	P38289	585 aa		5.35	□□□□□ -1.55
NDC1	YML031W	FSH1	P38777	243 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	SPT8	P38915	602 aa		5.35	□□□□□ -1.55
NDC1	YML031W	CCT4	P39078	528 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	ERV46	P39727	415 aa		5.35	□□□□□ -1.55
NDC1	YML031W	EDC3	P39998	551 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	YER158C	P40095	573 aa		5.35	□□□□□ -1.55
NDC1	YML031W	CTK3	P46963	296 aa	Predicted RBP	5.35	□□□□□ -1.55
NDC1	YML031W	YGR283C	P53336	341 aa	Predicted RBP	5.35	□□□□□ -1.55
NDC1	YML031W	YNR063W	P53749	607 aa		5.35	□□□□□ -1.55
NDC1	YML031W	YDL073W	Q07454	984 aa		5.35	□□□□□ -1.55
NDC1	YML031W	CIR2	Q08822	631 aa		5.35	□□□□□ -1.55
NDC1	YML031W	BI3	Q9ZZW7	517 aa		5.35	□□□□□ -1.55
NDC1	YML031W	RNA1	P11745	407 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	KAR3	P17119	729 aa		5.35	□□□□□ -1.55
NDC1	YML031W	RPO26	P20435	155 aa		5.35	□□□□□ -1.55
NDC1	YML031W	MSH3	P25336	1018 aa		5.35	□□□□□ -1.55
NDC1	YML031W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.35	□□□□□ -1.55	not detected
NDC1	YML031W	SEC65	P29478	273 aa		5.35	□□□□□ -1.55
NDC1	YML031W	SFP1	P32432	683 aa		5.35	□□□□□ -1.55
NDC1	YML031W	YEL043W	P32618	956 aa		5.35	□□□□□ -1.55
NDC1	YML031W	SHM1	P37292	490 aa	Predicted RBP	5.35	□□□□□ -1.55
NDC1	YML031W	KAP104	P38217	918 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	TDA3	P38758	523 aa		5.35	□□□□□ -1.55
NDC1	YML031W	UME6	P39001	836 aa		5.35	□□□□□ -1.55
NDC1	YML031W	KTR7	P40504	517 aa		5.35	□□□□□ -1.55
NDC1	YML031W	SUM1	P46676	1062 aa		5.35	□□□□□ -1.55
NDC1	YML031W	SNG1	P46950	547 aa		5.35	□□□□□ -1.55
NDC1	YML031W	AMA1	P50082	593 aa		5.35	□□□□□ -1.55
NDC1	YML031W	AIM14	P53109	570 aa		5.35	□□□□□ -1.55
NDC1	YML031W	PRM1	P53835	661 aa		5.35	□□□□□ -1.55
NDC1	YML031W	NAM8	Q00539	523 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	YPL113C	Q02961	396 aa		5.35	□□□□□ -1.55
NDC1	YML031W	PIR1	Q03178	341 aa		5.35	□□□□□ -1.55
NDC1	YML031W	ATG23	Q06671	453 aa		5.35	□□□□□ -1.55
NDC1	YML031W	YFT2	Q06676	274 aa		5.35	□□□□□ -1.55
NDC1	YML031W	APL5	Q08951	932 aa	Known RBP	5.35	□□□□□ -1.55
NDC1	YML031W	NAG1	Q8TGN9	163 aa		5.35	□□□□□ -1.55
NDC1	YML031W	YPK1	P12688	680 aa	Known RBP	5.34	□□□□□ -1.55
NDC1	YML031W	EST1	P17214	699 aa	Predicted RBP	5.34	□□□□□ -1.55
NDC1	YML031W	ADD66	P36040	267 aa		5.34	□□□□□ -1.55
NDC1	YML031W	SRP68	P38687	599 aa	Known RBP	5.34	□□□□□ -1.55
NDC1	YML031W	SAP1	P39955	897 aa	Known RBP	5.34	□□□□□ -1.55
NDC1	YML031W	LTP1	P40347	161 aa		5.34	□□□□□ -1.55
NDC1	YML031W	SWS2	P53937	143 aa		5.34	□□□□□ -1.55
NDC1	YML031W	BOP3	P53958	396 aa		5.34	□□□□□ -1.55
NDC1	YML031W	ELP3	Q02908	557 aa	Known RBP	5.34	□□□□□ -1.55
NDC1	YML031W	SND1	Q04007	877 aa		5.34	□□□□□ -1.55
NDC1	YML031W	SXM1	Q04175	944 aa	Known RBP	5.34	□□□□□ -1.55
NDC1	YML031W	MIS1	P09440	975 aa	Known RBP	5.33	□□□□□ -1.56
NDC1	YML031W	SEC23	P15303	768 aa	Known RBP	5.33	□□□□□ -1.56
NDC1	YML031W	RRN6	P32786	894 aa		5.33	□□□□□ -1.56
NDC1	YML031W	LIP5	P32875	414 aa		5.33	□□□□□ -1.56
NDC1	YML031W	YKL151C	P36059	337 aa		5.33	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms