RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 TIGD1Q96MW7 591 aa14.99□□□□□ -0.01
SHMT2-205ENST00000553474 NAPBQ9H115 298 aa14.99□□□□□ -0.01
SHMT2-205ENST00000553474 GPHNQ9NQX3 736 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-205ENST00000553474 BECN2A8MW95 431 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 PPP6R2O75170 966 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 CMA1P23946 247 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 GTF2F1P35269 517 aaKnown RBP eCLIP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 RASGRF1Q13972 1273 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 SART3Q15020 963 aaKnown RBP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 ANO1Q5XXA6 986 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 MYRIPQ8NFW9 859 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 FTOQ9C0B1 505 aaKnown RBP eCLIP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 KCNF1Q9H3M0 494 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 WWC3Q9ULE0 1092 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 SLC39A14Q15043 492 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 PPP2R5BQ15173 497 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 ZRSR1Q15695 479 aaKnown RBP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 AKNAD1Q5T1N1 836 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 TRAPPC3LQ5T215 181 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 CYB5R4Q7L1T6 521 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 STAG1Q8WVM7 1258 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 ZNF830Q96NB3 372 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 SDF4Q9BRK5 362 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 PDCL3Q9H2J4 239 aa14.98□□□□□ -0.01
SHMT2-205ENST00000553474 RNF41Q9H4P4 317 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-205ENST00000553474 ECM29Q5VYK3 1845 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 NTSR2O95665 410 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 U2AF2P26368 475 aaKnown RBP eCLIP14.97□□□□□ -0.014e-8■■□□□ 14.1
SHMT2-205ENST00000553474 RFC4P35249 363 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 FOSBP53539 338 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 CHAF1AQ13111 956 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-205ENST00000553474 TRIM29Q14134 588 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 DRC7Q8IY82 874 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 MAGEB6Q8N7X4 407 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 SPC24Q8NBT2 197 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 ARHGEF1Q92888 912 aaKnown RBP14.97□□□□□ -0.01
SHMT2-205ENST00000553474 ALG1Q9BT22 464 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 LY9Q9HBG7 655 aa14.97□□□□□ -0.01
SHMT2-205ENST00000553474 SRP68Q9UHB9 627 aaKnown RBP14.97□□□□□ -0.01
SHMT2-205ENST00000553474 CCDC196A0A1B0GTZ2 297 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 B4E1Z4 1266 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 IARSP41252 1262 aaKnown RBP14.96□□□□□ -0.01
SHMT2-205ENST00000553474 TMEM67Q5HYA8 995 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 TMED8Q6PL24 325 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-205ENST00000553474 MFSD6Q6ZSS7 791 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.96□□□□□ -0.01
SHMT2-205ENST00000553474 KIAA1468Q9P260 1216 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 CLIP2Q9UDT6 1046 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 SLC12A7Q9Y666 1083 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 CLIC4Q9Y696 253 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 A0A1B0GUL6 1792 aa14.96□□□□□ -0.01
SHMT2-205ENST00000553474 FAM237AA0A1B0GTK4 181 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 ZPR1O75312 459 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 MBD4O95243 580 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 POLR3DP05423 398 aaPredicted RBP14.96□□□□□ -0.02
SHMT2-205ENST00000553474 IFNAR1P17181 557 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 NTRK3Q16288 839 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 NFXL1Q6ZNB6 911 aa14.96□□□□□ -0.02
SHMT2-205ENST00000553474 GNL3LQ9NVN8 582 aaKnown RBP14.96□□□□□ -0.02
SHMT2-205ENST00000553474 ZNF804BA4D1E1 1349 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 NEDD4P46934 1319 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 ERICH2A1L162 156 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 CCDC69A6NI79 296 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 GOLGA8AA7E2F4 631 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 GSG1L2A8MUP6 293 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 PCP11498 1178 aaKnown RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 ADRA2BP18089 450 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 PTGS1P23219 599 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 NDUFA8P51970 172 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 TPM4P67936 248 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 R3HDM1Q15032 1099 aaKnown RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 KRT40Q6A162 431 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 C11orf57Q6ZUT1 292 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 CCDC186Q7Z3E2 898 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 VPS37DQ86XT2 251 aa14.95□□□□□ -0.02
SHMT2-205ENST00000553474 COL23A1Q86Y22 540 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 ELOA2Q8IYF1 753 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 NOL10Q9BSC4 688 aaKnown RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 EPB41L4AQ9HCS5 686 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 NIP7Q9Y221 180 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-205ENST00000553474 PSDA5PKW4 1024 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-205ENST00000553474 IFIT3O14879 490 aaKnown RBP14.94□□□□□ -0.02
SHMT2-205ENST00000553474 ZBTB22O15209 634 aa14.94□□□□□ -0.02
SHMT2-205ENST00000553474 SSRP1Q08945 709 aaKnown RBP14.94□□□□□ -0.02
SHMT2-205ENST00000553474 UBE4AQ14139 1066 aa14.94□□□□□ -0.02
SHMT2-205ENST00000553474 AXDND1Q5T1B0 1012 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-205ENST00000553474 ZSWIM5Q9P217 1185 aa14.94□□□□□ -0.02
SHMT2-205ENST00000553474 A0A1B0GVL5 298 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 IGSF3O75054 1194 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 ZNF202O95125 648 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 FMNL1O95466 1100 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 SLC3A2P08195 630 aaKnown RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 GNL2Q13823 731 aaKnown RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 SF3B3Q15393 1217 aaKnown RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 OTUD7BQ6GQQ9 843 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 MICU3Q86XE3 530 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 DHX40Q8IX18 779 aaKnown RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 TRIM22Q8IYM9 498 aa14.93□□□□□ -0.02
SHMT2-205ENST00000553474 HELBQ8NG08 1087 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-205ENST00000553474 ANAPC4Q9UJX5 808 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms