RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 PRKAB2O43741 272 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 DHX16O60231 1041 aaKnown RBP12.78□□□□□ -0.36
IFT88-204ENST00000461115 JAK2O60674 1132 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 APBA3O96018 575 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 NEDD4P46934 1319 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 FGD1P98174 961 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 L1TD1Q5T7N2 865 aaKnown RBP12.78□□□□□ -0.36
IFT88-204ENST00000461115 CYB5R4Q7L1T6 521 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 SP8Q8IXZ3 490 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 CHAMP1Q96JM3 812 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 RNF41Q9H4P4 317 aaPredicted RBP12.78□□□□□ -0.36
IFT88-204ENST00000461115 ZSCAN16Q9H4T2 348 aaPredicted RBP12.78□□□□□ -0.36
IFT88-204ENST00000461115 RAI14Q9P0K7 980 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 ABCF2Q9UG63 623 aa12.78□□□□□ -0.36
IFT88-204ENST00000461115 IQSEC3Q9UPP2 1182 aaPredicted RBP12.78□□□□□ -0.36
IFT88-204ENST00000461115 FOCADQ5VW36 1801 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 NPHP1O15259 732 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 APPP05067 770 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 FDPSP14324 419 aaKnown RBP12.77□□□□□ -0.37
IFT88-204ENST00000461115 PPP4CP60510 307 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 GPSM2P81274 684 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 MECOMQ03112 1051 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 STK3Q13188 491 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 CSPP1Q1MSJ5 1256 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 SBK1Q52WX2 424 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 CDC37L1Q7L3B6 337 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 USP48Q86UV5 1035 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 NKX2-3Q8TAU0 364 aa12.77□□□□□ -0.37
IFT88-204ENST00000461115 ECM29Q5VYK3 1845 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 PTPDC1A2A3K4 754 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 UBE2HP62256 183 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 RESTQ13127 1097 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 FOXD4L5Q5VV16 416 aaPredicted RBP12.76□□□□□ -0.37
IFT88-204ENST00000461115 CHST3Q7LGC8 479 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 ZNF804AQ7Z570 1209 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 FOXD4L4Q8WXT5 416 aaPredicted RBP12.76□□□□□ -0.37
IFT88-204ENST00000461115 LY9Q9HBG7 655 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 GPHNQ9NQX3 736 aaPredicted RBP12.76□□□□□ -0.37
IFT88-204ENST00000461115 TFCP2L1Q9NZI6 479 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 ANKIB1Q9P2G1 1089 aa12.76□□□□□ -0.37
IFT88-204ENST00000461115 MKRN1Q9UHC7 482 aaKnown RBP12.76□□□□□ -0.37
IFT88-204ENST00000461115 FAM205AQ6ZU69 1335 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 DDX60LQ5H9U9 1706 aaKnown RBP12.75□□□□□ -0.37
IFT88-204ENST00000461115 KLF18A0A0U1RQI7 1052 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 GOLGA6L3A6NEY3 463 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 SRGNP10124 158 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 PPARAQ07869 468 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 ATL3Q6DD88 541 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 APOA5Q6Q788 366 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 MFSD6Q6ZSS7 791 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 CERS3Q8IU89 383 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 TMTC2Q8N394 836 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 MIGA1Q8NAN2 632 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 FAM163AQ96GL9 167 aaPredicted RBP12.75□□□□□ -0.37
IFT88-204ENST00000461115 ATP8A2Q9NTI2 1148 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 ZSWIM5Q9P217 1185 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 CNPY2Q9Y2B0 182 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 ATP6V0A2Q9Y487 856 aa12.75□□□□□ -0.37
IFT88-204ENST00000461115 VPS37CA5D8V6 355 aaPredicted RBP12.74□□□□□ -0.37
IFT88-204ENST00000461115 B4E1Z4 1266 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 NPR1P16066 1061 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 PRDX5P30044 214 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 TDO2P48775 406 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 MRE11P49959 708 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 DNM1Q05193 864 aaKnown RBP12.74□□□□□ -0.37
IFT88-204ENST00000461115 TBC1D16Q8TBP0 767 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 CAMKK2Q96RR4 588 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 GZF1Q9H116 711 aaPredicted RBP12.74□□□□□ -0.37
IFT88-204ENST00000461115 CD209Q9NNX6 404 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 TMEM63CQ9P1W3 806 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 GGA1Q9UJY5 639 aa12.74□□□□□ -0.37
IFT88-204ENST00000461115 NSFL1CQ9UNZ2 370 aaKnown RBP12.74□□□□□ -0.37
IFT88-204ENST00000461115 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.74□□□□□ -0.37
IFT88-204ENST00000461115 STK36Q9NRP7 1315 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 ZNF646O15015 1829 aaPredicted RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 ORC4O43929 436 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 ADD1P35611 737 aaKnown RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 PDE6BP35913 854 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 CCT2P78371 535 aaKnown RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 KRT85P78386 507 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 CTDSPL2Q05D32 466 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 PPP2R5BQ15173 497 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 SEC23AQ15436 765 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 NTRK3Q16288 839 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 ZSCAN23Q3MJ62 389 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 GAS2L3Q86XJ1 694 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 L3MBTL3Q96JM7 780 aaPredicted RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 SCAND2PQ9GZW5 306 aaPredicted RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 FAM217BQ9NTX9 383 aaPredicted RBP12.73□□□□□ -0.37
IFT88-204ENST00000461115 POLLQ9UGP5 575 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 MYH6P13533 1939 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 NAV1Q8NEY1 1877 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 ROBO3Q96MS0 1386 aa12.73□□□□□ -0.37
IFT88-204ENST00000461115 GOLGA8BA8MQT2 603 aa12.72□□□□□ -0.37
IFT88-204ENST00000461115 RIOK3O14730 519 aaKnown RBP12.72□□□□□ -0.37
IFT88-204ENST00000461115 KDM4AO75164 1064 aa12.72□□□□□ -0.37
IFT88-204ENST00000461115 GADD45BO75293 160 aaPredicted RBP12.72□□□□□ -0.37
IFT88-204ENST00000461115 LDHCP07864 332 aa12.72□□□□□ -0.37
IFT88-204ENST00000461115 ALDH1B1P30837 517 aa12.72□□□□□ -0.37
IFT88-204ENST00000461115 DYNLL1P63167 89 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms