RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 CACNA1SQ13698 1873 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 CCDC196A0A1B0GTZ2 297 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 ERICH2A1L162 156 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 KIF28PB7ZC32 967 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 FMNL1O95466 1100 aaPredicted RBP16.62■□□□□ 0.25
MKS1-203ENST00000393120 POLR3DP05423 398 aaPredicted RBP16.62■□□□□ 0.25
MKS1-203ENST00000393120 U2AF2P26368 475 aaKnown RBP eCLIP16.62■□□□□ 0.25
MKS1-203ENST00000393120 RFC4P35249 363 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 WTAPQ15007 396 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 PPP2R5BQ15173 497 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 STK38Q15208 465 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 KRT40Q6A162 431 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 AMIGO3Q86WK7 504 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 ZNF384Q8TF68 577 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 MRPS27Q92552 414 aaKnown RBP16.62■□□□□ 0.25
MKS1-203ENST00000393120 ESR2Q92731 530 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 CLIC4Q9Y696 253 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 IRS2Q9Y4H2 1338 aa16.62■□□□□ 0.25
MKS1-203ENST00000393120 CASZ1Q86V15 1759 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 SPTLC2O15270 562 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 RANBP6O60518 1105 aaKnown RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 KINO60870 393 aaKnown RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 PTMAP06454 111 aaKnown RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 RXRAP19793 462 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 SSRP1Q08945 709 aaKnown RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 ANO6Q4KMQ2 910 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 ANO1Q5XXA6 986 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 FMR1NBQ8N0W7 255 aaPredicted RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 FSIP1Q8NA03 581 aa16.61■□□□□ 0.25
MKS1-203ENST00000393120 NSUN4Q96CB9 384 aaKnown RBP16.61■□□□□ 0.25
MKS1-203ENST00000393120 FAM182BQ5T319 152 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 SDR42E1Q8WUS8 393 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 PHKBQ93100 1093 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 BCL11BQ9C0K0 894 aaPredicted RBP16.6■□□□□ 0.25
MKS1-203ENST00000393120 CBX8Q9HC52 389 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 GJB4Q9NTQ9 266 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 KLRK1P26718 216 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 TRIM29Q14134 588 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 SLC39A14Q15043 492 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 SEC23AQ15436 765 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 SF3A1Q15459 793 aaKnown RBP16.6■□□□□ 0.25
MKS1-203ENST00000393120 RRP12Q5JTH9 1297 aaKnown RBP16.6■□□□□ 0.25
MKS1-203ENST00000393120 TDRD7Q8NHU6 1098 aaKnown RBP16.6■□□□□ 0.25
MKS1-203ENST00000393120 AIFM3Q96NN9 605 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 TAF1P21675 1872 aa16.6■□□□□ 0.25
MKS1-203ENST00000393120 TAF1LQ8IZX4 1826 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 AP5Z1O43299 807 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 MECOMQ03112 1051 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 RTN1Q16799 776 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 UBAC1Q9BSL1 405 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 MYL10Q9BUA6 226 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 TOMM22Q9NS69 142 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 LEMD3Q9Y2U8 911 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 CHD4Q14839 1912 aa16.59■□□□□ 0.25
MKS1-203ENST00000393120 MINDY4BA8MYZ0 360 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 OFD1O75665 1012 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 TPM3P06753 285 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 ZNF165P49910 485 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 NFIXQ14938 502 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 FAM196AQ6ZSG2 479 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 CCDC144CPQ8IYA2 1237 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 TRIM22Q8IYM9 498 aa16.58■□□□□ 0.25
MKS1-203ENST00000393120 TRPC5Q9UL62 973 aaPredicted RBP16.58■□□□□ 0.25
MKS1-203ENST00000393120 PPP6R2O75170 966 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 CMA1P23946 247 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 DYNLL1P63167 89 aaKnown RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 GRAPQ13588 217 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 STX1AQ16623 288 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 AXDND1Q5T1B0 1012 aaPredicted RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 MEX3CQ5U5Q3 659 aaKnown RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 SPTY2D1Q68D10 685 aaPredicted RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 NBPF11Q86T75 865 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 LUZP1Q86V48 1076 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 ZNF654Q8IZM8 581 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 CRACR2BQ8N4Y2 399 aaPredicted RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 FANCBQ8NB91 859 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 GRAPLQ8TC17 118 aaPredicted RBP16.58■□□□□ 0.24
MKS1-203ENST00000393120 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.58■□□□□ 0.24
MKS1-203ENST00000393120 SLC26A6Q9BXS9 759 aa16.58■□□□□ 0.24
MKS1-203ENST00000393120 CTR9Q6PD62 1173 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 C15orf52Q6ZUT6 534 aaKnown RBP16.57■□□□□ 0.24
MKS1-203ENST00000393120 SEPT12Q8IYM1 358 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 ATP8A2Q9NTI2 1148 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 TFCP2L1Q9NZI6 479 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.57■□□□□ 0.24
MKS1-203ENST00000393120 AFF2P51816 1311 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 NT5C2P49902 561 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 JMYQ8N9B5 988 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 ZSCAN10Q96SZ4 725 aaPredicted RBP16.57■□□□□ 0.24
MKS1-203ENST00000393120 ZKSCAN3Q9BRR0 538 aa16.57■□□□□ 0.24
MKS1-203ENST00000393120 CRNKL1Q9BZJ0 848 aaKnown RBP16.57■□□□□ 0.24
MKS1-203ENST00000393120 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.57■□□□□ 0.24
MKS1-203ENST00000393120 SBF2Q86WG5 1849 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 ORC4O43929 436 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 DEXIO95424 95 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 NDUFA8P51970 172 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 PTPAQ15257 358 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 SBK1Q52WX2 424 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 CCDC24Q8N4L8 307 aa16.56■□□□□ 0.24
MKS1-203ENST00000393120 CNBD1Q8NA66 436 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms