RNA–Protein interactions for RNA: YPR163C

TIF3, Transcript of Translation initiation factor eIF-4B, yeast

Gene TIF3, Length 1,311 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TIF3	YPR163C	VTH2	P40890	1549 aa		11.26	□□□□□ -0.61
TIF3	YPR163C	STH1	P32597	1359 aa		11.2	□□□□□ -0.62
TIF3	YPR163C	IKI3	Q06706	1349 aa	Known RBP	11.19	□□□□□ -0.62
TIF3	YPR163C	SNQ2	P32568	1501 aa	Known RBP	11.19	□□□□□ -0.62
TIF3	YPR163C	YRF1-1	P0CX20	1796 aa		11.19	□□□□□ -0.62
TIF3	YPR163C	YRF1-5	P0CX21	1796 aa		11.19	□□□□□ -0.62
TIF3	YPR163C	YRF1-8	P0CX22	1796 aa		11.19	□□□□□ -0.62
TIF3	YPR163C	NTE1	Q04958	1679 aa		11.18	□□□□□ -0.62
TIF3	YPR163C	PRY3	P47033	881 aa		11.17	□□□□□ -0.62
TIF3	YPR163C	TY1B-JR2	P47100	1755 aa	Known RBP	11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-ER2	Q03619	1755 aa		11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-MR1	Q04214	1755 aa		11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-MR2	Q04670	1755 aa	Known RBP	11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-LR1	Q12088	1755 aa	Known RBP	11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-NL1	Q12112	1755 aa		11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-GR1	Q12141	1755 aa		11.16	□□□□□ -0.62
TIF3	YPR163C	TY1B-BL	Q12490	1755 aa		11.16	□□□□□ -0.62
TIF3	YPR163C	MET10	P39692	1035 aa		11.15	□□□□□ -0.62
TIF3	YPR163C	MLP2	P40457	1679 aa		11.15	□□□□□ -0.62
TIF3	YPR163C	RTT106	P40161	455 aa		11.14	□□□□□ -0.63
TIF3	YPR163C	SNT2	P53127	1403 aa		11.14	□□□□□ -0.63
TIF3	YPR163C	RPO21	P04050	1733 aa	Known RBP	11.12	□□□□□ -0.63
TIF3	YPR163C	YFR006W	P43590	535 aa		11.09	□□□□□ -0.63
TIF3	YPR163C	PDR15	Q04182	1529 aa	Known RBP	11.07	□□□□□ -0.64
TIF3	YPR163C	IFH1	P39520	1085 aa		11.07	□□□□□ -0.64
TIF3	YPR163C	NUP170	P38181	1502 aa		11.05	□□□□□ -0.64
TIF3	YPR163C	GEA1	P47102	1408 aa	Predicted RBP	11.03	□□□□□ -0.64
TIF3	YPR163C	ULS1	Q08562	1619 aa		10.99	□□□□□ -0.65
TIF3	YPR163C	SSM4	P40318	1319 aa		10.97	□□□□□ -0.65
TIF3	YPR163C	IRC20	Q06554	1556 aa		10.95	□□□□□ -0.66
TIF3	YPR163C	PDR12	Q02785	1511 aa		10.95	□□□□□ -0.66
TIF3	YPR163C	DNF2	Q12675	1612 aa		10.95	□□□□□ -0.66
TIF3	YPR163C	SPO14	P36126	1683 aa		10.94	□□□□□ -0.66
TIF3	YPR163C	NUP157	P40064	1391 aa	Known RBP	10.93	□□□□□ -0.66
TIF3	YPR163C	IQG1	Q12280	1495 aa		10.91	□□□□□ -0.66
TIF3	YPR163C	TRM3	Q07527	1436 aa		10.9	□□□□□ -0.66
TIF3	YPR163C	PDR10	P51533	1564 aa		10.88	□□□□□ -0.67
TIF3	YPR163C	GDB1	Q06625	1536 aa		10.87	□□□□□ -0.67
TIF3	YPR163C	BUD3	P25558	1636 aa		10.84	□□□□□ -0.67
TIF3	YPR163C	TY3B-G	Q99315	1547 aa		10.83	□□□□□ -0.68
TIF3	YPR163C	DOP1	Q03921	1698 aa		10.81	□□□□□ -0.68
TIF3	YPR163C	CAT8	P39113	1433 aa		10.8	□□□□□ -0.68
TIF3	YPR163C	YBT1	P32386	1661 aa		10.79	□□□□□ -0.68
TIF3	YPR163C	AAD16	Q02895	342 aa		10.79	□□□□□ -0.68
TIF3	YPR163C	POL5	P39985	1022 aa	Known RBP	10.76	□□□□□ -0.69
TIF3	YPR163C	PRI1	P10363	409 aa		10.75	□□□□□ -0.69
TIF3	YPR163C	YOR093C	Q12275	1648 aa		10.71	□□□□□ -0.69
TIF3	YPR163C	CKB1	P43639	278 aa		10.7	□□□□□ -0.7
TIF3	YPR163C	SRB8	P25648	1427 aa		10.69	□□□□□ -0.7
TIF3	YPR163C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	10.68	□□□□□ -0.7	not detected
TIF3	YPR163C	ARO1	P08566	1588 aa	Known RBP	10.67	□□□□□ -0.7
TIF3	YPR163C	YAP3	P38749	330 aa		10.65	□□□□□ -0.7
TIF3	YPR163C	BNR1	P40450	1375 aa		10.64	□□□□□ -0.71
TIF3	YPR163C	GCN2	P15442	1659 aa		10.61	□□□□□ -0.71
TIF3	YPR163C	CHC1	P22137	1653 aa	Known RBP	10.61	□□□□□ -0.71
TIF3	YPR163C	NOP2	P40991	618 aa	Known RBP	10.6	□□□□□ -0.71
TIF3	YPR163C	URN1	Q06525	465 aa	Known RBP	10.6	□□□□□ -0.71
TIF3	YPR163C	ENP1	P38333	483 aa	Known RBP	10.59	□□□□□ -0.71
TIF3	YPR163C	YSP2	Q06681	1438 aa		10.59	□□□□□ -0.71
TIF3	YPR163C	SEC3	P33332	1336 aa	Known RBP	10.58	□□□□□ -0.72
TIF3	YPR163C	BUD21	Q08492	214 aa	Predicted RBP	10.58	□□□□□ -0.72
TIF3	YPR163C	NOP7	P53261	605 aa	Known RBP	10.57	□□□□□ -0.72
TIF3	YPR163C	MAK10	Q02197	733 aa		10.55	□□□□□ -0.72
TIF3	YPR163C	SEC7	P11075	2009 aa	Known RBP	10.54	□□□□□ -0.72
TIF3	YPR163C	DNF3	Q12674	1656 aa		10.53	□□□□□ -0.72
TIF3	YPR163C	PAF1	P38351	445 aa		10.5	□□□□□ -0.73
TIF3	YPR163C	SPT7	P35177	1332 aa		10.47	□□□□□ -0.73
TIF3	YPR163C	ISW2	Q08773	1120 aa		10.44	□□□□□ -0.74
TIF3	YPR163C	PDR5	P33302	1511 aa	Known RBP	10.43	□□□□□ -0.74
TIF3	YPR163C	IPL1	P38991	367 aa		10.41	□□□□□ -0.74
TIF3	YPR163C	YCK3	P39962	524 aa		10.41	□□□□□ -0.74
TIF3	YPR163C	BFR2	Q06631	534 aa	Known RBP	10.4	□□□□□ -0.74
TIF3	YPR163C	HAA1	Q12753	694 aa	Known RBP	10.39	□□□□□ -0.75
TIF3	YPR163C	MHP1	P43638	1398 aa		10.38	□□□□□ -0.75
TIF3	YPR163C	YMR196W	Q04336	1088 aa		10.35	□□□□□ -0.75
TIF3	YPR163C	RPG1	P38249	964 aa	Known RBP	10.34	□□□□□ -0.75
TIF3	YPR163C	ORC1	P54784	914 aa	Predicted RBP	10.33	□□□□□ -0.76
TIF3	YPR163C	TYS1	P36421	394 aa	Known RBP	10.32	□□□□□ -0.76
TIF3	YPR163C	LEU3	P08638	886 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	SCT1	P32784	759 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	THI12	P42883	340 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	THI5	P43534	340 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	THI11	P47183	340 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	THI13	Q07748	340 aa		10.29	□□□□□ -0.76
TIF3	YPR163C	RAV1	P47104	1357 aa		10.27	□□□□□ -0.77
TIF3	YPR163C	HAP1	P0CE41	1502 aa		10.27	□□□□□ -0.77
TIF3	YPR163C	TY3B-I	Q7LHG5	1498 aa	Known RBP	10.26	□□□□□ -0.77
TIF3	YPR163C	RTC1	Q08281	1341 aa		10.26	□□□□□ -0.77
TIF3	YPR163C	PSD2	P53037	1138 aa	Known RBP	10.26	□□□□□ -0.77
TIF3	YPR163C	IML1	P47170	1584 aa		10.24	□□□□□ -0.77
TIF3	YPR163C	NUP188	P52593	1655 aa	Known RBP	10.23	□□□□□ -0.77
TIF3	YPR163C	PRS1	P32895	427 aa	Known RBP	10.23	□□□□□ -0.77
TIF3	YPR163C	TAF5	P38129	798 aa		10.23	□□□□□ -0.77
TIF3	YPR163C	VMR1	P38735	1592 aa		10.22	□□□□□ -0.77
TIF3	YPR163C	ESL2	P36168	1195 aa		10.22	□□□□□ -0.77
TIF3	YPR163C	USO1	P25386	1790 aa		10.22	□□□□□ -0.77
TIF3	YPR163C	PDS5	Q04264	1277 aa		10.21	□□□□□ -0.78
TIF3	YPR163C	YLR419W	Q06698	1435 aa	Known RBP	10.19	□□□□□ -0.78
TIF3	YPR163C	TY1B-NL2	Q99337	1749 aa	Known RBP	10.19	□□□□□ -0.78
TIF3	YPR163C	TSR3	Q12094	313 aa	Known RBP	10.19	□□□□□ -0.78

Retrieved 100 of 5,963 RNA–protein pairs in 35 ms