RNA–Protein interactions for RNA: YNL232W

CSL4, Transcript of Exosome non-catalytic core component, yeast

Gene CSL4, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSL4	YNL232W	YOL036W	Q08206	761 aa		11.04	□□□□□ -0.64
CSL4	YNL232W	YJL171C	P46992	396 aa		11.02	□□□□□ -0.65
CSL4	YNL232W	YCF1	P39109	1515 aa	Known RBP	11.02	□□□□□ -0.65
CSL4	YNL232W	VMA1	P17255	1071 aa	Known RBP	11	□□□□□ -0.65
CSL4	YNL232W	MIF2	P35201	549 aa		10.98	□□□□□ -0.65
CSL4	YNL232W	EAP1	P36041	632 aa	Known RBP	10.98	□□□□□ -0.65
CSL4	YNL232W	SSK2	P53599	1579 aa		10.98	□□□□□ -0.65
CSL4	YNL232W	TRP5	P00931	707 aa	Known RBP	10.94	□□□□□ -0.66
CSL4	YNL232W	SAM3	Q08986	587 aa		10.94	□□□□□ -0.66
CSL4	YNL232W	SKI3	P17883	1432 aa	Known RBP	10.93	□□□□□ -0.66
CSL4	YNL232W	TAF2	P23255	1407 aa		10.9	□□□□□ -0.66
CSL4	YNL232W	RTG1	P32607	177 aa		10.88	□□□□□ -0.67
CSL4	YNL232W	BMT6	Q12291	365 aa		10.87	□□□□□ -0.67
CSL4	YNL232W	SIN3	P22579	1536 aa		10.86	□□□□□ -0.67
CSL4	YNL232W	YNL035C	P53962	389 aa	Known RBP	10.82	□□□□□ -0.68
CSL4	YNL232W	NCR1	Q12200	1170 aa		10.81	□□□□□ -0.68
CSL4	YNL232W	ESP1	Q03018	1630 aa		10.79	□□□□□ -0.68
CSL4	YNL232W	GYP5	Q12344	894 aa		10.78	□□□□□ -0.68
CSL4	YNL232W	UFD4	P33202	1483 aa		10.78	□□□□□ -0.68
CSL4	YNL232W	SEC61	P32915	480 aa		10.77	□□□□□ -0.69
CSL4	YNL232W	MYO2	P19524	1574 aa	Known RBP	10.76	□□□□□ -0.69
CSL4	YNL232W	ESC1	Q03661	1658 aa	Known RBP	10.74	□□□□□ -0.69
CSL4	YNL232W	BNI1	P41832	1953 aa		10.73	□□□□□ -0.69
CSL4	YNL232W	MET5	P47169	1442 aa		10.73	□□□□□ -0.69
CSL4	YNL232W	ABP1	P15891	592 aa	Known RBP	10.71	□□□□□ -0.69
CSL4	YNL232W	DNF1	P32660	1571 aa		10.71	□□□□□ -0.69
CSL4	YNL232W	DCW1	P36091	449 aa		10.71	□□□□□ -0.69
CSL4	YNL232W	CDC25	P04821	1589 aa		10.7	□□□□□ -0.7
CSL4	YNL232W	SSN2	P38931	1420 aa		10.7	□□□□□ -0.7
CSL4	YNL232W	DAN4	P47179	1161 aa		10.7	□□□□□ -0.7
CSL4	YNL232W	HTA1	P04911	132 aa	Known RBP	10.69	□□□□□ -0.7
CSL4	YNL232W	HTA2	P04912	132 aa		10.69	□□□□□ -0.7
CSL4	YNL232W	RAM2	P29703	316 aa		10.69	□□□□□ -0.7
CSL4	YNL232W	JIP4	Q03361	876 aa		10.67	□□□□□ -0.7
CSL4	YNL232W	LTE1	P07866	1435 aa		10.67	□□□□□ -0.7
CSL4	YNL232W	RPA190	P10964	1664 aa	Known RBP	10.66	□□□□□ -0.7
CSL4	YNL232W	TY1B-BR	Q12193	1756 aa		10.66	□□□□□ -0.7
CSL4	YNL232W	TY1B-GR3	Q12316	1755 aa		10.66	□□□□□ -0.7
CSL4	YNL232W	TY1B-OR	Q92393	1755 aa		10.66	□□□□□ -0.7
CSL4	YNL232W	TY2B-LR1	P0C2J3	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-F	P0CX63	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-GR2	P0CX64	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-C	P25384	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-DR2	Q03494	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY1B-DR1	Q03855	1755 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-DR3	Q07791	1770 aa	Known RBP	10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-OR1	Q12113	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-DR1	Q12472	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	TY2B-OR2	Q12501	1770 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	CHD1	P32657	1468 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	SCC2	Q04002	1493 aa		10.65	□□□□□ -0.7
CSL4	YNL232W	MAK11	P20484	414 aa	Known RBP	10.64	□□□□□ -0.71
CSL4	YNL232W	TFG1	P41895	735 aa	Predicted RBP	10.64	□□□□□ -0.71
CSL4	YNL232W	YEL023C	P39992	682 aa		10.62	□□□□□ -0.71
CSL4	YNL232W	RKR1	Q04781	1562 aa		10.6	□□□□□ -0.71
CSL4	YNL232W	EDS1	P38073	919 aa		10.59	□□□□□ -0.71
CSL4	YNL232W	PTC4	P38089	393 aa		10.59	□□□□□ -0.71
CSL4	YNL232W	SAP30	P38429	201 aa		10.59	□□□□□ -0.71
CSL4	YNL232W	GRE2	Q12068	342 aa	Known RBP	10.59	□□□□□ -0.71
CSL4	YNL232W	YPK9	Q12697	1472 aa		10.59	□□□□□ -0.71
CSL4	YNL232W	RPO31	P04051	1460 aa		10.57	□□□□□ -0.72
CSL4	YNL232W	ITT1	Q04638	464 aa		10.56	□□□□□ -0.72
CSL4	YNL232W	YDL129W	Q07555	291 aa		10.56	□□□□□ -0.72
CSL4	YNL232W	PTC3	P34221	468 aa	Known RBP	10.55	□□□□□ -0.72
CSL4	YNL232W	PAN1	P32521	1480 aa		10.53	□□□□□ -0.72
CSL4	YNL232W	RQC2	Q12532	1038 aa	Known RBP	10.52	□□□□□ -0.73
CSL4	YNL232W	GEA2	P39993	1459 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	COQ8	P27697	501 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	ATH1	P48016	1211 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-H	O13535	1793 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-DR5	P0C2I2	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-DR6	P0C2I3	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-LR2	P0C2I5	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-PR2	P0C2J0	1756 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-JR1	P47098	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-ML2	Q03434	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-ER1	Q03612	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-ML1	Q04711	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-GR2	Q12269	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-OL	Q12273	1755 aa		10.51	□□□□□ -0.73
CSL4	YNL232W	TY1B-PL	Q12414	1755 aa	Known RBP	10.51	□□□□□ -0.73
CSL4	YNL232W	TY2B-B	Q12491	1770 aa		10.49	□□□□□ -0.73
CSL4	YNL232W	GUT1	P32190	709 aa		10.49	□□□□□ -0.73
CSL4	YNL232W	TY1B-DR3	Q99231	1755 aa		10.44	□□□□□ -0.74
CSL4	YNL232W	MMS1	Q06211	1407 aa		10.43	□□□□□ -0.74
CSL4	YNL232W	PML39	Q03760	334 aa		10.43	□□□□□ -0.74
CSL4	YNL232W	YRF1-1	P0CX20	1796 aa		10.43	□□□□□ -0.74
CSL4	YNL232W	YRF1-5	P0CX21	1796 aa		10.43	□□□□□ -0.74
CSL4	YNL232W	YRF1-8	P0CX22	1796 aa		10.43	□□□□□ -0.74
CSL4	YNL232W	IRC20	Q06554	1556 aa		10.42	□□□□□ -0.74
CSL4	YNL232W	CHL1	P22516	861 aa	Predicted RBP	10.41	□□□□□ -0.74
CSL4	YNL232W	NST1	P53935	1240 aa		10.41	□□□□□ -0.74
CSL4	YNL232W	PRE3	P38624	215 aa		10.4	□□□□□ -0.74
CSL4	YNL232W	SOL3	P38858	249 aa		10.39	□□□□□ -0.75
CSL4	YNL232W	YDR344C	Q05510	147 aa		10.39	□□□□□ -0.75
CSL4	YNL232W	BCK2	P33306	851 aa		10.34	□□□□□ -0.75
CSL4	YNL232W	MMS22	Q06164	1454 aa		10.34	□□□□□ -0.75

Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms