RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeastyeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC42YLR229C VMA1P17255 1071 aaKnown RBP6.66□□□□□ -1.34
CDC42YLR229C PTC3P34221 468 aaKnown RBP6.65□□□□□ -1.34
CDC42YLR229C EDS1P38073 919 aa6.64□□□□□ -1.35
CDC42YLR229C ATH1P48016 1211 aa6.64□□□□□ -1.35
CDC42YLR229C ESP1Q03018 1630 aa6.64□□□□□ -1.35
CDC42YLR229C MYO2P19524 1574 aaKnown RBP6.62□□□□□ -1.35
CDC42YLR229C PBS2P08018 668 aa6.62□□□□□ -1.35
CDC42YLR229C GRE2Q12068 342 aaKnown RBP6.62□□□□□ -1.35
CDC42YLR229C ATG2P53855 1592 aa6.61□□□□□ -1.35
CDC42YLR229C SKI3P17883 1432 aaKnown RBP6.61□□□□□ -1.35
CDC42YLR229C RPN1P38764 993 aaKnown RBP6.61□□□□□ -1.35
CDC42YLR229C REF2P42073 533 aaPredicted RBP6.6□□□□□ -1.35
CDC42YLR229C MST1P07236 462 aa6.59□□□□□ -1.35
CDC42YLR229C GUT1P32190 709 aa6.58□□□□□ -1.36
CDC42YLR229C MAM3Q12296 706 aa6.57□□□□□ -1.36
CDC42YLR229C GYP5Q12344 894 aa6.57□□□□□ -1.36
CDC42YLR229C MDS3P53094 1487 aa6.57□□□□□ -1.36
CDC42YLR229C YPK9Q12697 1472 aa6.56□□□□□ -1.36
CDC42YLR229C ABP1P15891 592 aaKnown RBP6.56□□□□□ -1.36
CDC42YLR229C PEP1P32319 1579 aa6.56□□□□□ -1.36
CDC42YLR229C DSF2P38213 736 aa6.55□□□□□ -1.36
CDC42YLR229C SAM3Q08986 587 aa6.55□□□□□ -1.36
CDC42YLR229C MAK21Q12176 1025 aaKnown RBP6.55□□□□□ -1.36
CDC42YLR229C POL1P13382 1468 aa6.53□□□□□ -1.36
CDC42YLR229C KIC1P38692 1080 aa6.53□□□□□ -1.36
CDC42YLR229C SET4P42948 560 aa6.52□□□□□ -1.37
CDC42YLR229C YOL036WQ08206 761 aa6.52□□□□□ -1.37
CDC42YLR229C WSC3Q12215 556 aa6.52□□□□□ -1.37
CDC42YLR229C MSB4Q12317 492 aa6.52□□□□□ -1.37
CDC42YLR229C DCW1P36091 449 aa6.51□□□□□ -1.37
CDC42YLR229C TAF7Q05021 590 aa6.51□□□□□ -1.37
CDC42YLR229C STU1P38198 1513 aa6.5□□□□□ -1.37
CDC42YLR229C CHD1P32657 1468 aa6.5□□□□□ -1.37
CDC42YLR229C HTA1P04911 132 aaKnown RBP6.5□□□□□ -1.37
CDC42YLR229C HTA2P04912 132 aa6.5□□□□□ -1.37
CDC42YLR229C UBP9P39967 754 aa6.5□□□□□ -1.37
CDC42YLR229C VHR2P40041 505 aa6.5□□□□□ -1.37
CDC42YLR229C SCC2Q04002 1493 aa6.49□□□□□ -1.37
CDC42YLR229C YTA7P40340 1379 aa6.49□□□□□ -1.37
CDC42YLR229C COX6P00427 148 aa6.49□□□□□ -1.37
CDC42YLR229C IES2P40154 320 aa6.49□□□□□ -1.37
CDC42YLR229C RPO31P04051 1460 aa6.48□□□□□ -1.37
CDC42YLR229C EAP1P36041 632 aaKnown RBP6.48□□□□□ -1.37
CDC42YLR229C MMS22Q06164 1454 aa6.47□□□□□ -1.37
CDC42YLR229C YGR273CP53329 174 aa6.46□□□□□ -1.38
CDC42YLR229C YNR021WP53723 404 aaKnown RBP6.46□□□□□ -1.38
CDC42YLR229C RKR1Q04781 1562 aa6.45□□□□□ -1.38
CDC42YLR229C RAD54P32863 898 aa6.45□□□□□ -1.38
CDC42YLR229C UFD4P33202 1483 aa6.45□□□□□ -1.38
CDC42YLR229C YOR1P53049 1477 aa6.44□□□□□ -1.38
CDC42YLR229C TOP2P06786 1428 aaKnown RBP6.43□□□□□ -1.38
CDC42YLR229C ATF2P53296 535 aa6.43□□□□□ -1.38
CDC42YLR229C YBL029C-AQ3E756 94 aa6.43□□□□□ -1.38
CDC42YLR229C UBP14P38237 781 aaKnown RBP6.42□□□□□ -1.38
CDC42YLR229C YLR326WQ06170 240 aaKnown RBP6.42□□□□□ -1.38
CDC42YLR229C BPT1P14772 1559 aa6.42□□□□□ -1.38
CDC42YLR229C SMC4Q12267 1418 aa6.42□□□□□ -1.38
CDC42YLR229C YCF1P39109 1515 aaKnown RBP6.41□□□□□ -1.38
CDC42YLR229C KEX1P09620 729 aa6.41□□□□□ -1.38
CDC42YLR229C RPP1BP10622 106 aaKnown RBP6.41□□□□□ -1.38
CDC42YLR229C GLC3P32775 704 aa6.41□□□□□ -1.38
CDC42YLR229C YEL023CP39992 682 aa6.41□□□□□ -1.38
CDC42YLR229C SPP1Q03012 353 aa6.41□□□□□ -1.38
CDC42YLR229C HGH1P48362 394 aaKnown RBP6.4□□□□□ -1.38
CDC42YLR229C AIM7Q12156 149 aa6.4□□□□□ -1.38
CDC42YLR229C NUP42P49686 430 aaKnown RBP6.39□□□□□ -1.39
CDC42YLR229C MYO4P32492 1471 aa6.39□□□□□ -1.39
CDC42YLR229C AI4P03878 556 aa6.38□□□□□ -1.39
CDC42YLR229C DIT2P21595 489 aa6.38□□□□□ -1.39
CDC42YLR229C TIF11P38912 153 aaKnown RBP6.38□□□□□ -1.39
CDC42YLR229C VNX1P42839 908 aa6.38□□□□□ -1.39
CDC42YLR229C ULI1P43604 169 aa6.38□□□□□ -1.39
CDC42YLR229C TRP5P00931 707 aaKnown RBP6.37□□□□□ -1.39
CDC42YLR229C KIN1P13185 1064 aa6.37□□□□□ -1.39
CDC42YLR229C YDR090CQ03193 310 aa6.37□□□□□ -1.39
CDC42YLR229C JIP4Q03361 876 aa6.37□□□□□ -1.39
CDC42YLR229C MPH3P0CE00 602 aa6.36□□□□□ -1.39
CDC42YLR229C PTC4P38089 393 aa6.36□□□□□ -1.39
CDC42YLR229C PCS60P38137 543 aaKnown RBP RIP-Chip data6.36□□□□□ -1.39not detected
CDC42YLR229C SOL3P38858 249 aa6.36□□□□□ -1.39
CDC42YLR229C TY2B-LR1P0C2J3 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-FP0CX63 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-GR2P0CX64 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-CP25384 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-DR2Q03494 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY1B-DR1Q03855 1755 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-DR3Q07791 1770 aaKnown RBP6.34□□□□□ -1.39
CDC42YLR229C TY2B-OR1Q12113 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-DR1Q12472 1770 aa6.34□□□□□ -1.39
CDC42YLR229C TY2B-OR2Q12501 1770 aa6.34□□□□□ -1.39
CDC42YLR229C PSE1P32337 1089 aaKnown RBP6.33□□□□□ -1.4
CDC42YLR229C TFG1P41895 735 aaPredicted RBP6.33□□□□□ -1.4
CDC42YLR229C DAN4P47179 1161 aa6.33□□□□□ -1.4
CDC42YLR229C TY1B-DR3Q99231 1755 aa6.31□□□□□ -1.4
CDC42YLR229C STH1P32597 1359 aa6.31□□□□□ -1.4
CDC42YLR229C DMA2P53924 522 aa6.3□□□□□ -1.4
CDC42YLR229C YNL035CP53962 389 aaKnown RBP6.3□□□□□ -1.4
CDC42YLR229C SNQ2P32568 1501 aaKnown RBP6.3□□□□□ -1.4
CDC42YLR229C TY2B-BQ12491 1770 aa6.29□□□□□ -1.4
CDC42YLR229C SPP41P38904 1435 aa6.29□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms