RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W FKH1P40466 484 aa7.21□□□□□ -1.25
SSL1YLR005W MIF2P35201 549 aa7.2□□□□□ -1.26
SSL1YLR005W GYP5Q12344 894 aa7.2□□□□□ -1.26
SSL1YLR005W MAK11P20484 414 aaKnown RBP7.2□□□□□ -1.26
SSL1YLR005W XRN1P22147 1528 aaKnown RBP7.18□□□□□ -1.26
SSL1YLR005W PEP1P32319 1579 aa7.17□□□□□ -1.26
SSL1YLR005W DCW1P36091 449 aa7.17□□□□□ -1.26
SSL1YLR005W YJL171CP46992 396 aa7.17□□□□□ -1.26
SSL1YLR005W RTG1P32607 177 aa7.16□□□□□ -1.26
SSL1YLR005W EDS1P38073 919 aa7.15□□□□□ -1.26
SSL1YLR005W ATG2P53855 1592 aa7.14□□□□□ -1.27
SSL1YLR005W REV3P14284 1504 aa7.13□□□□□ -1.27
SSL1YLR005W COQ8P27697 501 aa7.13□□□□□ -1.27
SSL1YLR005W HTA1P04911 132 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W HTA2P04912 132 aa7.11□□□□□ -1.27
SSL1YLR005W PTC3P34221 468 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W YNL035CP53962 389 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W GRE2Q12068 342 aaKnown RBP7.11□□□□□ -1.27
SSL1YLR005W NCR1Q12200 1170 aa7.11□□□□□ -1.27
SSL1YLR005W ABP1P15891 592 aaKnown RBP7.08□□□□□ -1.28
SSL1YLR005W BPT1P14772 1559 aa7.08□□□□□ -1.28
SSL1YLR005W ATH1P48016 1211 aa7.08□□□□□ -1.28
SSL1YLR005W BMT6Q12291 365 aa7.08□□□□□ -1.28
SSL1YLR005W SEC61P32915 480 aa7.07□□□□□ -1.28
SSL1YLR005W YEL023CP39992 682 aa7.07□□□□□ -1.28
SSL1YLR005W DAN4P47179 1161 aa7.07□□□□□ -1.28
SSL1YLR005W SSK2P53599 1579 aa7.05□□□□□ -1.28
SSL1YLR005W JIP4Q03361 876 aa7.05□□□□□ -1.28
SSL1YLR005W SIN3P22579 1536 aa7.05□□□□□ -1.28
SSL1YLR005W GUT1P32190 709 aa7.04□□□□□ -1.28
SSL1YLR005W PTC4P38089 393 aa7.04□□□□□ -1.28
SSL1YLR005W TFG1P41895 735 aaPredicted RBP7.02□□□□□ -1.29
SSL1YLR005W SSN2P38931 1420 aa6.99□□□□□ -1.29
SSL1YLR005W SAP30P38429 201 aa6.98□□□□□ -1.29
SSL1YLR005W SOL3P38858 249 aa6.98□□□□□ -1.29
SSL1YLR005W SET1P38827 1080 aaKnown RBP6.96□□□□□ -1.29
SSL1YLR005W YCF1P39109 1515 aaKnown RBP6.96□□□□□ -1.29
SSL1YLR005W NST1P53935 1240 aa6.95□□□□□ -1.3
SSL1YLR005W YDL129WQ07555 291 aa6.95□□□□□ -1.3
SSL1YLR005W PML39Q03760 334 aa6.95□□□□□ -1.3
SSL1YLR005W SKI3P17883 1432 aaKnown RBP6.94□□□□□ -1.3
SSL1YLR005W NOP53Q12080 455 aaKnown RBP6.94□□□□□ -1.3
SSL1YLR005W ESP1Q03018 1630 aa6.93□□□□□ -1.3
SSL1YLR005W MID1P41821 548 aa6.89□□□□□ -1.31
SSL1YLR005W YGR273CP53329 174 aa6.89□□□□□ -1.31
SSL1YLR005W TAF2P23255 1407 aa6.89□□□□□ -1.31
SSL1YLR005W MPH3P0CE00 602 aa6.88□□□□□ -1.31
SSL1YLR005W ILV3P39522 585 aaKnown RBP6.88□□□□□ -1.31
SSL1YLR005W YDR344CQ05510 147 aa6.88□□□□□ -1.31
SSL1YLR005W MYO2P19524 1574 aaKnown RBP6.88□□□□□ -1.31
SSL1YLR005W AI4P03878 556 aa6.86□□□□□ -1.31
SSL1YLR005W UFD4P33202 1483 aa6.85□□□□□ -1.31
SSL1YLR005W YPK9Q12697 1472 aa6.84□□□□□ -1.31
SSL1YLR005W SCC2Q04002 1493 aa6.82□□□□□ -1.32
SSL1YLR005W CHL1P22516 861 aaPredicted RBP6.82□□□□□ -1.32
SSL1YLR005W PRE3P38624 215 aa6.82□□□□□ -1.32
SSL1YLR005W ELP4Q02884 456 aaKnown RBP6.81□□□□□ -1.32
SSL1YLR005W ESC1Q03661 1658 aaKnown RBP6.8□□□□□ -1.32
SSL1YLR005W PEX29Q03370 554 aa6.8□□□□□ -1.32
SSL1YLR005W CDC25P04821 1589 aa6.79□□□□□ -1.32
SSL1YLR005W VHR2P40041 505 aa6.79□□□□□ -1.32
SSL1YLR005W MET5P47169 1442 aa6.79□□□□□ -1.32
SSL1YLR005W RPO31P04051 1460 aa6.78□□□□□ -1.32
SSL1YLR005W KEX1P09620 729 aa6.78□□□□□ -1.32
SSL1YLR005W SLI15P38283 698 aa6.78□□□□□ -1.32
SSL1YLR005W TY2B-LR1P0C2J3 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-FP0CX63 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-GR2P0CX64 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-CP25384 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR2Q03494 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY1B-DR1Q03855 1755 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR3Q07791 1770 aaKnown RBP6.76□□□□□ -1.33
SSL1YLR005W TY2B-OR1Q12113 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-DR1Q12472 1770 aa6.76□□□□□ -1.33
SSL1YLR005W TY2B-OR2Q12501 1770 aa6.76□□□□□ -1.33
SSL1YLR005W UBP14P38237 781 aaKnown RBP6.76□□□□□ -1.33
SSL1YLR005W CHD1P32657 1468 aa6.76□□□□□ -1.33
SSL1YLR005W ARH1P48360 493 aa6.75□□□□□ -1.33
SSL1YLR005W YLR326WQ06170 240 aaKnown RBP6.75□□□□□ -1.33
SSL1YLR005W MPC54Q08550 464 aa6.74□□□□□ -1.33
SSL1YLR005W TY1B-BRQ12193 1756 aa6.73□□□□□ -1.33
SSL1YLR005W TY1B-GR3Q12316 1755 aa6.73□□□□□ -1.33
SSL1YLR005W TY1B-ORQ92393 1755 aa6.73□□□□□ -1.33
SSL1YLR005W RKR1Q04781 1562 aa6.73□□□□□ -1.33
SSL1YLR005W DMA1P38823 416 aa6.73□□□□□ -1.33
SSL1YLR005W LTE1P07866 1435 aa6.73□□□□□ -1.33
SSL1YLR005W BCK2P33306 851 aa6.72□□□□□ -1.33
SSL1YLR005W IFH1P39520 1085 aa6.72□□□□□ -1.33
SSL1YLR005W VPS70P47161 811 aa6.72□□□□□ -1.33
SSL1YLR005W DNF1P32660 1571 aa6.72□□□□□ -1.33
SSL1YLR005W RPA190P10964 1664 aaKnown RBP6.71□□□□□ -1.34
SSL1YLR005W PCS60P38137 543 aaKnown RBP RIP-Chip data6.7□□□□□ -1.34not detected
SSL1YLR005W NMA111P53920 997 aa6.7□□□□□ -1.34
SSL1YLR005W HAP5Q02516 242 aa6.7□□□□□ -1.34
SSL1YLR005W YPR148CQ06523 435 aa6.7□□□□□ -1.34
SSL1YLR005W PAN1P32521 1480 aa6.7□□□□□ -1.34
SSL1YLR005W VRP1P37370 817 aa6.69□□□□□ -1.34
SSL1YLR005W CDC73Q06697 393 aa6.69□□□□□ -1.34
SSL1YLR005W RAD54P32863 898 aa6.69□□□□□ -1.34
SSL1YLR005W DPL1Q05567 589 aa6.69□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms