RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP49YGL172W NUP159P40477 1460 aa10.53□□□□□ -0.72
NUP49YGL172W SAS10Q12136 610 aaPredicted RBP10.52□□□□□ -0.73
NUP49YGL172W SNQ2P32568 1501 aaKnown RBP10.51□□□□□ -0.73
NUP49YGL172W STH1P32597 1359 aa10.5□□□□□ -0.73
NUP49YGL172W RPO21P04050 1733 aaKnown RBP10.48□□□□□ -0.73
NUP49YGL172W YRF1-1P0CX20 1796 aa10.46□□□□□ -0.74
NUP49YGL172W YRF1-5P0CX21 1796 aa10.46□□□□□ -0.74
NUP49YGL172W YRF1-8P0CX22 1796 aa10.46□□□□□ -0.74
NUP49YGL172W LTE1P07866 1435 aa10.45□□□□□ -0.74
NUP49YGL172W SNT2P53127 1403 aa10.45□□□□□ -0.74
NUP49YGL172W MLP2P40457 1679 aa10.44□□□□□ -0.74
NUP49YGL172W PDR15Q04182 1529 aaKnown RBP10.41□□□□□ -0.74
NUP49YGL172W VPS15P22219 1454 aa10.41□□□□□ -0.74
NUP49YGL172W ULS1Q08562 1619 aa10.4□□□□□ -0.74
NUP49YGL172W RTT106P40161 455 aa10.4□□□□□ -0.75
NUP49YGL172W TAF7Q05021 590 aa10.39□□□□□ -0.75
NUP49YGL172W GEA2P39993 1459 aaKnown RBP10.39□□□□□ -0.75
NUP49YGL172W MIF2P35201 549 aa10.33□□□□□ -0.76
NUP49YGL172W IFH1P39520 1085 aa10.33□□□□□ -0.76
NUP49YGL172W MET10P39692 1035 aa10.33□□□□□ -0.76
NUP49YGL172W SPO14P36126 1683 aa10.3□□□□□ -0.76
NUP49YGL172W AVT3P36062 692 aa10.3□□□□□ -0.76
NUP49YGL172W ITT1Q04638 464 aa10.29□□□□□ -0.76
NUP49YGL172W BNI1P41832 1953 aa10.28□□□□□ -0.76
NUP49YGL172W PRY3P47033 881 aa10.28□□□□□ -0.76
NUP49YGL172W PDR12Q02785 1511 aa10.28□□□□□ -0.76
NUP49YGL172W IRC20Q06554 1556 aa10.28□□□□□ -0.76
NUP49YGL172W DRS2P39524 1355 aa10.27□□□□□ -0.77
NUP49YGL172W GEA1P47102 1408 aaPredicted RBP10.27□□□□□ -0.77
NUP49YGL172W GDB1Q06625 1536 aa10.24□□□□□ -0.77
NUP49YGL172W NUP170P38181 1502 aa10.23□□□□□ -0.77
NUP49YGL172W NUP157P40064 1391 aaKnown RBP10.23□□□□□ -0.77
NUP49YGL172W TY3B-GQ99315 1547 aa10.2□□□□□ -0.78
NUP49YGL172W PDR10P51533 1564 aa10.19□□□□□ -0.78
NUP49YGL172W DIP2Q12220 943 aaPredicted RBP10.19□□□□□ -0.78
NUP49YGL172W MMS1Q06211 1407 aa10.18□□□□□ -0.78
NUP49YGL172W IQG1Q12280 1495 aa10.17□□□□□ -0.78
NUP49YGL172W CAT8P39113 1433 aa10.16□□□□□ -0.78
NUP49YGL172W YBT1P32386 1661 aa10.15□□□□□ -0.78
NUP49YGL172W BUD3P25558 1636 aa10.11□□□□□ -0.79
NUP49YGL172W DOP1Q03921 1698 aa10.09□□□□□ -0.79
NUP49YGL172W PRI1P10363 409 aa10.08□□□□□ -0.8
NUP49YGL172W CKB1P43639 278 aa10.08□□□□□ -0.8
NUP49YGL172W ARO1P08566 1588 aaKnown RBP10.08□□□□□ -0.8
NUP49YGL172W TRM3Q07527 1436 aa10.07□□□□□ -0.8
NUP49YGL172W AAD16Q02895 342 aa10.06□□□□□ -0.8
NUP49YGL172W ABP1P15891 592 aaKnown RBP10.02□□□□□ -0.81
NUP49YGL172W DNF2Q12675 1612 aa10.02□□□□□ -0.81
NUP49YGL172W YSP2Q06681 1438 aa10.01□□□□□ -0.81
NUP49YGL172W IKI3Q06706 1349 aaKnown RBP10□□□□□ -0.81
NUP49YGL172W CHC1P22137 1653 aaKnown RBP9.99□□□□□ -0.81
NUP49YGL172W SRB8P25648 1427 aa9.98□□□□□ -0.81
NUP49YGL172W ISW2Q08773 1120 aa9.98□□□□□ -0.81
NUP49YGL172W BNR1P40450 1375 aa9.96□□□□□ -0.81
NUP49YGL172W SEC7P11075 2009 aaKnown RBP9.94□□□□□ -0.82
NUP49YGL172W YFR006WP43590 535 aa9.93□□□□□ -0.82
NUP49YGL172W RPG1P38249 964 aaKnown RBP9.9□□□□□ -0.82
NUP49YGL172W SSM4P40318 1319 aa9.9□□□□□ -0.82
NUP49YGL172W BUD21Q08492 214 aaPredicted RBP9.89□□□□□ -0.83
NUP49YGL172W YOR093CQ12275 1648 aa9.86□□□□□ -0.83
NUP49YGL172W YAP3P38749 330 aa9.78□□□□□ -0.84
NUP49YGL172W DNF3Q12674 1656 aa9.75□□□□□ -0.85
NUP49YGL172W URN1Q06525 465 aaKnown RBP9.75□□□□□ -0.85
NUP49YGL172W NUP188P52593 1655 aaKnown RBP9.73□□□□□ -0.85
NUP49YGL172W VMR1P38735 1592 aa9.72□□□□□ -0.85
NUP49YGL172W GCN2P15442 1659 aa9.71□□□□□ -0.86
NUP49YGL172W IPL1P38991 367 aa9.69□□□□□ -0.86
NUP49YGL172W IML1P47170 1584 aa9.68□□□□□ -0.86
NUP49YGL172W TYS1P36421 394 aaKnown RBP9.67□□□□□ -0.86
NUP49YGL172W PDR5P33302 1511 aaKnown RBP9.66□□□□□ -0.86
NUP49YGL172W TSR3Q12094 313 aaKnown RBP9.64□□□□□ -0.87
NUP49YGL172W MAK10Q02197 733 aa9.63□□□□□ -0.87
NUP49YGL172W PDR11P40550 1411 aa9.61□□□□□ -0.87
NUP49YGL172W PAF1P38351 445 aa9.58□□□□□ -0.88
NUP49YGL172W HAP1P0CE41 1502 aa9.58□□□□□ -0.88
NUP49YGL172W NOP7P53261 605 aaKnown RBP9.54□□□□□ -0.88
NUP49YGL172W YCK3P39962 524 aa9.53□□□□□ -0.88
NUP49YGL172W HAA1Q12753 694 aaKnown RBP9.53□□□□□ -0.88
NUP49YGL172W RAV1P47104 1357 aa9.52□□□□□ -0.88
NUP49YGL172W USO1P25386 1790 aa9.52□□□□□ -0.89
NUP49YGL172W RTC1Q08281 1341 aa9.47□□□□□ -0.89
NUP49YGL172W DMA1P38823 416 aa9.45□□□□□ -0.9
NUP49YGL172W TY1B-NL2Q99337 1749 aaKnown RBP9.44□□□□□ -0.9
NUP49YGL172W KRE5P22023 1365 aa9.44□□□□□ -0.9
NUP49YGL172W NUP192P47054 1683 aa9.43□□□□□ -0.9
NUP49YGL172W MRX12P47084 519 aa9.42□□□□□ -0.9
NUP49YGL172W YMR196WQ04336 1088 aa9.41□□□□□ -0.9
NUP49YGL172W BCK1Q01389 1478 aa9.41□□□□□ -0.9
NUP49YGL172W THI12P42883 340 aa9.4□□□□□ -0.9
NUP49YGL172W THI5P43534 340 aa9.4□□□□□ -0.9
NUP49YGL172W THI11P47183 340 aa9.4□□□□□ -0.9
NUP49YGL172W RIA1P53893 1110 aa9.4□□□□□ -0.9
NUP49YGL172W THI13Q07748 340 aa9.4□□□□□ -0.9
NUP49YGL172W RAD9P14737 1309 aa9.4□□□□□ -0.9
NUP49YGL172W CAB1Q04430 367 aa9.39□□□□□ -0.91
NUP49YGL172W ALD4P46367 519 aaKnown RBP9.39□□□□□ -0.91
NUP49YGL172W CFT1Q06632 1357 aaKnown RBP9.38□□□□□ -0.91
NUP49YGL172W TAF5P38129 798 aa9.37□□□□□ -0.91
NUP49YGL172W ESL2P36168 1195 aa9.36□□□□□ -0.91
NUP49YGL172W YNR029CP53729 429 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 5,963 RNA–protein pairs in 8.4 ms