RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeastyeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PTA1YAL043C TY2B-GR2P0CX64 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-CP25384 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-DR2Q03494 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY1B-DR1Q03855 1755 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-DR3Q07791 1770 aaKnown RBP5.55□□□□□ -1.52
PTA1YAL043C TY2B-OR1Q12113 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-DR1Q12472 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-OR2Q12501 1770 aa5.55□□□□□ -1.52
PTA1YAL043C MLP2P40457 1679 aa5.54□□□□□ -1.52
PTA1YAL043C PTP3P40048 928 aa5.54□□□□□ -1.52
PTA1YAL043C SPT7P35177 1332 aa5.54□□□□□ -1.52
PTA1YAL043C TY1B-DR3Q99231 1755 aa5.53□□□□□ -1.52
PTA1YAL043C URN1Q06525 465 aaKnown RBP5.52□□□□□ -1.53
PTA1YAL043C SLX5P32828 619 aaKnown RBP5.5□□□□□ -1.53
PTA1YAL043C TY2B-BQ12491 1770 aa5.5□□□□□ -1.53
PTA1YAL043C YAH1Q12184 172 aaKnown RBP5.49□□□□□ -1.53
PTA1YAL043C ULS1Q08562 1619 aa5.49□□□□□ -1.53
PTA1YAL043C VPS15P22219 1454 aa5.49□□□□□ -1.53
PTA1YAL043C VTH1P40438 1549 aa5.48□□□□□ -1.53
PTA1YAL043C VTH2P40890 1549 aa5.48□□□□□ -1.53
PTA1YAL043C TY3B-GQ99315 1547 aa5.47□□□□□ -1.53
PTA1YAL043C FUN12P39730 1002 aaKnown RBP5.46□□□□□ -1.54
PTA1YAL043C TIF4632P39936 914 aaKnown RBP5.46□□□□□ -1.54
PTA1YAL043C RSM7P47150 247 aa5.45□□□□□ -1.54
PTA1YAL043C PSD2P53037 1138 aaKnown RBP5.45□□□□□ -1.54
PTA1YAL043C EPS1P40557 701 aa5.44□□□□□ -1.54
PTA1YAL043C ESC1Q03661 1658 aaKnown RBP5.44□□□□□ -1.54
PTA1YAL043C GDB1Q06625 1536 aa5.44□□□□□ -1.54
PTA1YAL043C ENP1P38333 483 aaKnown RBP5.44□□□□□ -1.54
PTA1YAL043C NOP7P53261 605 aaKnown RBP5.44□□□□□ -1.54
PTA1YAL043C BUD21Q08492 214 aaPredicted RBP5.43□□□□□ -1.54
PTA1YAL043C CDC25P04821 1589 aa5.43□□□□□ -1.54
PTA1YAL043C DNF1P32660 1571 aa5.42□□□□□ -1.54
PTA1YAL043C NUP170P38181 1502 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-HO13535 1793 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-DR5P0C2I2 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-DR6P0C2I3 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-LR2P0C2I5 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-LR3P0C2I6 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-PR1P0C2I9 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-PR2P0C2J0 1756 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-PR3P0C2J1 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-JR1P47098 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-ML2Q03434 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-ER1Q03612 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-ML1Q04711 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-GR2Q12269 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-OLQ12273 1755 aa5.42□□□□□ -1.54
PTA1YAL043C TY1B-PLQ12414 1755 aaKnown RBP5.42□□□□□ -1.54
PTA1YAL043C TY1B-BRQ12193 1756 aa5.41□□□□□ -1.54
PTA1YAL043C TY1B-GR3Q12316 1755 aa5.41□□□□□ -1.54
PTA1YAL043C TY1B-ORQ92393 1755 aa5.41□□□□□ -1.54
PTA1YAL043C BDF1P35817 686 aa5.41□□□□□ -1.54
PTA1YAL043C TGL3P40308 642 aa5.41□□□□□ -1.54
PTA1YAL043C BUD3P25558 1636 aa5.41□□□□□ -1.54
PTA1YAL043C BBC1P47068 1157 aa5.4□□□□□ -1.54
PTA1YAL043C SNT2P53127 1403 aa5.4□□□□□ -1.55
PTA1YAL043C PDR10P51533 1564 aa5.39□□□□□ -1.55
PTA1YAL043C AI2P03876 854 aa5.39□□□□□ -1.55
PTA1YAL043C ARO1P08566 1588 aaKnown RBP5.37□□□□□ -1.55
PTA1YAL043C IQG1Q12280 1495 aa5.37□□□□□ -1.55
PTA1YAL043C TAF5P38129 798 aa5.37□□□□□ -1.55
PTA1YAL043C NST1P53935 1240 aa5.37□□□□□ -1.55
PTA1YAL043C YLR271WQ06152 274 aa5.37□□□□□ -1.55
PTA1YAL043C NUP157P40064 1391 aaKnown RBP5.37□□□□□ -1.55
PTA1YAL043C SRB8P25648 1427 aa5.37□□□□□ -1.55
PTA1YAL043C SSP1P38871 571 aa5.36□□□□□ -1.55
PTA1YAL043C YBT1P32386 1661 aa5.36□□□□□ -1.55
PTA1YAL043C GEA2P39993 1459 aaKnown RBP5.36□□□□□ -1.55
PTA1YAL043C MET10P39692 1035 aa5.36□□□□□ -1.55
PTA1YAL043C TY1B-JR2P47100 1755 aaKnown RBP5.36□□□□□ -1.55
PTA1YAL043C TY1B-ER2Q03619 1755 aa5.36□□□□□ -1.55
PTA1YAL043C TY1B-MR1Q04214 1755 aa5.36□□□□□ -1.55
PTA1YAL043C TY1B-MR2Q04670 1755 aaKnown RBP5.36□□□□□ -1.55
PTA1YAL043C TY1B-LR1Q12088 1755 aaKnown RBP5.36□□□□□ -1.55
PTA1YAL043C TY1B-NL1Q12112 1755 aa5.36□□□□□ -1.55
PTA1YAL043C TY1B-GR1Q12141 1755 aa5.36□□□□□ -1.55
PTA1YAL043C TY1B-BLQ12490 1755 aa5.36□□□□□ -1.55
PTA1YAL043C PRS1P32895 427 aaKnown RBP5.34□□□□□ -1.55
PTA1YAL043C PAF1P38351 445 aa5.34□□□□□ -1.55
PTA1YAL043C NUP159P40477 1460 aa5.34□□□□□ -1.56
PTA1YAL043C ARP8Q12386 881 aaKnown RBP RIP-Chip data5.34□□□□□ -1.56not detected
PTA1YAL043C SEC3P33332 1336 aaKnown RBP5.33□□□□□ -1.56
PTA1YAL043C KIP3P53086 805 aaKnown RBP5.32□□□□□ -1.56
PTA1YAL043C CAT8P39113 1433 aa5.31□□□□□ -1.56
PTA1YAL043C NTE1Q04958 1679 aa5.31□□□□□ -1.56
PTA1YAL043C CFT1Q06632 1357 aaKnown RBP5.3□□□□□ -1.56
PTA1YAL043C PDS5Q04264 1277 aa5.3□□□□□ -1.56
PTA1YAL043C IRC20Q06554 1556 aa5.29□□□□□ -1.56
PTA1YAL043C RPA190P10964 1664 aaKnown RBP5.29□□□□□ -1.56
PTA1YAL043C YSP2Q06681 1438 aa5.27□□□□□ -1.57
PTA1YAL043C BUD31P25337 157 aaPredicted RBP5.27□□□□□ -1.57
PTA1YAL043C RPO21P04050 1733 aaKnown RBP5.27□□□□□ -1.57
PTA1YAL043C SPO14P36126 1683 aa5.27□□□□□ -1.57
PTA1YAL043C BNR1P40450 1375 aa5.26□□□□□ -1.57
PTA1YAL043C MHP1P43638 1398 aa5.26□□□□□ -1.57
PTA1YAL043C RTG3P38165 486 aa5.23□□□□□ -1.57
PTA1YAL043C LTE1P07866 1435 aa5.23□□□□□ -1.57
PTA1YAL043C PDR11P40550 1411 aa5.23□□□□□ -1.57
PTA1YAL043C UBP9P39967 754 aa5.23□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms