RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 PRDM2Q13029 1718 aa20.02■□□□□ 0.8
PHGDH-233ENST00000642021 SETD5Q9C0A6 1442 aa19.99■□□□□ 0.79
PHGDH-233ENST00000642021 FAM50AQ14320 339 aaKnown RBP19.98■□□□□ 0.79
PHGDH-233ENST00000642021 ATP1B4Q9UN42 357 aaPredicted RBP19.97■□□□□ 0.79
PHGDH-233ENST00000642021 SIN3AQ96ST3 1273 aa19.97■□□□□ 0.79
PHGDH-233ENST00000642021 KCNH8Q96L42 1107 aa19.95■□□□□ 0.78
PHGDH-233ENST00000642021 SUPT16HQ9Y5B9 1047 aaKnown RBP19.93■□□□□ 0.78
PHGDH-233ENST00000642021 FHAD1B1AJZ9 1412 aa19.93■□□□□ 0.78
PHGDH-233ENST00000642021 RAD54L2Q9Y4B4 1467 aa19.92■□□□□ 0.78
PHGDH-233ENST00000642021 PRKCSHP14314 528 aaPredicted RBP19.91■□□□□ 0.78
PHGDH-233ENST00000642021 FANCD2Q9BXW9 1451 aa19.91■□□□□ 0.78
PHGDH-233ENST00000642021 FHOD3Q2V2M9 1422 aa19.91■□□□□ 0.78
PHGDH-233ENST00000642021 PCF11O94913 1555 aaKnown RBP19.9■□□□□ 0.78
PHGDH-233ENST00000642021 WDR97A6NE52 1622 aa19.86■□□□□ 0.77
PHGDH-233ENST00000642021 CC2D2AQ9P2K1 1620 aa19.85■□□□□ 0.77
PHGDH-233ENST00000642021 DDX10Q13206 875 aaKnown RBP19.83■□□□□ 0.77
PHGDH-233ENST00000642021 CFAP43Q8NDM7 1665 aa19.83■□□□□ 0.77
PHGDH-233ENST00000642021 POLA1P09884 1462 aaPredicted RBP19.82■□□□□ 0.76
PHGDH-233ENST00000642021 ABCA10Q8WWZ4 1543 aa19.82■□□□□ 0.76
PHGDH-233ENST00000642021 HIRIP3Q9BW71 556 aaPredicted RBP19.8■□□□□ 0.76
PHGDH-233ENST00000642021 TOPBP1Q92547 1522 aa19.79■□□□□ 0.76
PHGDH-233ENST00000642021 NESP48681 1621 aa19.79■□□□□ 0.76
PHGDH-233ENST00000642021 CASKIN1Q8WXD9 1431 aa19.79■□□□□ 0.76
PHGDH-233ENST00000642021 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
PHGDH-233ENST00000642021 FYCO1Q9BQS8 1478 aa19.78■□□□□ 0.76
PHGDH-233ENST00000642021 PPP1R15AO75807 674 aaPredicted RBP19.76■□□□□ 0.75
PHGDH-233ENST00000642021 TIMELESSQ9UNS1 1208 aa19.74■□□□□ 0.75
PHGDH-233ENST00000642021 EFCAB5A4FU69 1503 aa19.73■□□□□ 0.75
PHGDH-233ENST00000642021 AQRO60306 1485 aaKnown RBP eCLIP19.73■□□□□ 0.751e-6■■□□□ 14.4
PHGDH-233ENST00000642021 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.73■□□□□ 0.75
PHGDH-233ENST00000642021 FGD6Q6ZV73 1430 aa19.7■□□□□ 0.74
PHGDH-233ENST00000642021 PTPRKQ15262 1439 aa19.7■□□□□ 0.74
PHGDH-233ENST00000642021 SNAPC4Q5SXM2 1469 aa19.68■□□□□ 0.74
PHGDH-233ENST00000642021 FMN1Q68DA7 1419 aa19.68■□□□□ 0.74
PHGDH-233ENST00000642021 TDRD9Q8NDG6 1382 aaKnown RBP19.67■□□□□ 0.74
PHGDH-233ENST00000642021 CUL7Q14999 1698 aa19.66■□□□□ 0.74
PHGDH-233ENST00000642021 MTUS2Q5JR59 1369 aa19.66■□□□□ 0.74
PHGDH-233ENST00000642021 CTTNBP2Q8WZ74 1663 aa19.63■□□□□ 0.73
PHGDH-233ENST00000642021 URB2Q14146 1524 aaKnown RBP19.63■□□□□ 0.73
PHGDH-233ENST00000642021 TSHZ2Q9NRE2 1034 aa19.63■□□□□ 0.73
PHGDH-233ENST00000642021 CCDC18Q5T9S5 1454 aa19.62■□□□□ 0.73
PHGDH-233ENST00000642021 BCL11AQ9H165 835 aa19.61■□□□□ 0.73
PHGDH-233ENST00000642021 HFM1A2PYH4 1435 aa19.6■□□□□ 0.73
PHGDH-233ENST00000642021 BCANQ96GW7 911 aa19.6■□□□□ 0.73
PHGDH-233ENST00000642021 TONSLQ96HA7 1378 aa19.59■□□□□ 0.73
PHGDH-233ENST00000642021 UACAQ9BZF9 1416 aa19.58■□□□□ 0.72
PHGDH-233ENST00000642021 NCOA2Q15596 1464 aa19.57■□□□□ 0.72
PHGDH-233ENST00000642021 NAIPQ13075 1403 aa19.56■□□□□ 0.72
PHGDH-233ENST00000642021 FKBP8Q14318 412 aa19.56■□□□□ 0.72
PHGDH-233ENST00000642021 TRIM52Q96A61 297 aa19.56■□□□□ 0.72
PHGDH-233ENST00000642021 ANP32CO43423 234 aa19.56■□□□□ 0.72
PHGDH-233ENST00000642021 LRRIQ1Q96JM4 1722 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 GRIN2BQ13224 1484 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 CCER2I3L3R5 266 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 SAMD9Q5K651 1589 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 GAPVD1Q14C86 1478 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 MYOM3Q5VTT5 1437 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 PTPN23Q9H3S7 1636 aa19.55■□□□□ 0.72
PHGDH-233ENST00000642021 ABCA5Q8WWZ7 1642 aa19.52■□□□□ 0.72
PHGDH-233ENST00000642021 RRP7BPQ9NSQ0 103 aa19.49■□□□□ 0.71
PHGDH-233ENST00000642021 CHIC2Q9UKJ5 165 aa19.49■□□□□ 0.71
PHGDH-233ENST00000642021 LAMC3Q9Y6N6 1575 aa19.49■□□□□ 0.71
PHGDH-233ENST00000642021 MAGI3Q5TCQ9 1506 aa19.48■□□□□ 0.71
PHGDH-233ENST00000642021 KDM5BQ9UGL1 1544 aa19.46■□□□□ 0.71
PHGDH-233ENST00000642021 UGGT2Q9NYU1 1516 aa19.44■□□□□ 0.7
PHGDH-233ENST00000642021 SUPT6HQ7KZ85 1726 aaKnown RBP19.44■□□□□ 0.7
PHGDH-233ENST00000642021 EHBP1L1Q8N3D4 1523 aa19.43■□□□□ 0.7
PHGDH-233ENST00000642021 ARHGEF11O15085 1522 aa19.43■□□□□ 0.7
PHGDH-233ENST00000642021 PDS5BQ9NTI5 1447 aa19.42■□□□□ 0.7
PHGDH-233ENST00000642021 DENND4BO75064 1496 aaPredicted RBP19.41■□□□□ 0.7
PHGDH-233ENST00000642021 THOC2Q8NI27 1593 aaKnown RBP19.41■□□□□ 0.7
PHGDH-233ENST00000642021 ARID3CA6NKF2 412 aa19.39■□□□□ 0.7
PHGDH-233ENST00000642021 HSPA5P11021 654 aaKnown RBP19.37■□□□□ 0.69
PHGDH-233ENST00000642021 ERICH6Q7L0X2 663 aa19.37■□□□□ 0.69
PHGDH-233ENST00000642021 WASHC2AQ641Q2 1341 aa19.37■□□□□ 0.69
PHGDH-233ENST00000642021 NEFLP07196 543 aa19.37■□□□□ 0.69
PHGDH-233ENST00000642021 TCOF1Q13428 1488 aaKnown RBP19.36■□□□□ 0.69
PHGDH-233ENST00000642021 KDM6BO15054 1643 aa19.35■□□□□ 0.69
PHGDH-233ENST00000642021 TARBP1Q13395 1621 aaKnown RBP19.35■□□□□ 0.69
PHGDH-233ENST00000642021 FOXD1Q16676 465 aa19.34■□□□□ 0.69
PHGDH-233ENST00000642021 EPRSP07814 1512 aaKnown RBP19.33■□□□□ 0.68
PHGDH-233ENST00000642021 MPHOSPH9Q99550 1183 aa19.33■□□□□ 0.68
PHGDH-233ENST00000642021 CDK13Q14004 1512 aaKnown RBP19.32■□□□□ 0.68
PHGDH-233ENST00000642021 KIF21AQ7Z4S6 1674 aa19.32■□□□□ 0.68
PHGDH-233ENST00000642021 L3MBTL2Q969R5 705 aa19.3■□□□□ 0.68
PHGDH-233ENST00000642021 HNRNPUQ00839 825 aaKnown RBP eCLIP19.3■□□□□ 0.68
PHGDH-233ENST00000642021 C11orf95C9JLR9 678 aaPredicted RBP19.28■□□□□ 0.68
PHGDH-233ENST00000642021 HECW1Q76N89 1606 aa19.28■□□□□ 0.68
PHGDH-233ENST00000642021 EIF4G2P78344 907 aaKnown RBP eCLIP19.27■□□□□ 0.687e-14■■■■■ 63.8
PHGDH-233ENST00000642021 AKNAQ7Z591 1439 aa19.26■□□□□ 0.67
PHGDH-233ENST00000642021 GCC2Q8IWJ2 1684 aa19.26■□□□□ 0.67
PHGDH-233ENST00000642021 IQGAP2Q13576 1575 aa19.26■□□□□ 0.67
PHGDH-233ENST00000642021 CCDC184Q52MB2 194 aa19.26■□□□□ 0.67
PHGDH-233ENST00000642021 MIA2Q96PC5 1412 aa19.26■□□□□ 0.67
PHGDH-233ENST00000642021 ANP32EQ9BTT0 268 aa19.24■□□□□ 0.67
PHGDH-233ENST00000642021 RBM19Q9Y4C8 960 aaKnown RBP19.24■□□□□ 0.67
PHGDH-233ENST00000642021 ZNF644Q9H582 1327 aaPredicted RBP19.23■□□□□ 0.67
PHGDH-233ENST00000642021 WDR62O43379 1518 aa19.22■□□□□ 0.67
PHGDH-233ENST00000642021 NBPF8Q3BBV2 869 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms