RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 KCNH8Q96L42 1107 aa16.85■□□□□ 0.29
CAPN3-221ENST00000638141 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
CAPN3-221ENST00000638141 ERCC6Q03468 1493 aa16.84■□□□□ 0.29
CAPN3-221ENST00000638141 KIF21AQ7Z4S6 1674 aa16.83■□□□□ 0.28
CAPN3-221ENST00000638141 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
CAPN3-221ENST00000638141 ITGAEP38570 1179 aa16.81■□□□□ 0.28
CAPN3-221ENST00000638141 SALL2Q9Y467 1007 aaPredicted RBP16.81■□□□□ 0.28
CAPN3-221ENST00000638141 FANCD2Q9BXW9 1451 aa16.81■□□□□ 0.28
CAPN3-221ENST00000638141 RRBP1Q9P2E9 1410 aaKnown RBP16.8■□□□□ 0.28
CAPN3-221ENST00000638141 NOP58Q9Y2X3 529 aaKnown RBP16.72■□□□□ 0.27
CAPN3-221ENST00000638141 PPP1R15AO75807 674 aaPredicted RBP16.69■□□□□ 0.26
CAPN3-221ENST00000638141 THOC2Q8NI27 1593 aaKnown RBP16.67■□□□□ 0.26
CAPN3-221ENST00000638141 TIMELESSQ9UNS1 1208 aa16.67■□□□□ 0.26
CAPN3-221ENST00000638141 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
CAPN3-221ENST00000638141 MRC2Q9UBG0 1479 aa16.66■□□□□ 0.26
CAPN3-221ENST00000638141 SYNJ1O43426 1573 aa16.65■□□□□ 0.26
CAPN3-221ENST00000638141 MAPKBP1O60336 1514 aa16.65■□□□□ 0.26
CAPN3-221ENST00000638141 PPP4R2Q9NY27 417 aa16.64■□□□□ 0.25
CAPN3-221ENST00000638141 URB2Q14146 1524 aaKnown RBP16.63■□□□□ 0.25
CAPN3-221ENST00000638141 RAPGEF2Q9Y4G8 1499 aa16.62■□□□□ 0.25
CAPN3-221ENST00000638141 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
CAPN3-221ENST00000638141 C11orf95C9JLR9 678 aaPredicted RBP16.59■□□□□ 0.25
CAPN3-221ENST00000638141 TRIM52Q96A61 297 aa16.59■□□□□ 0.25
CAPN3-221ENST00000638141 WDR62O43379 1518 aa16.59■□□□□ 0.25
CAPN3-221ENST00000638141 ANP32CO43423 234 aa16.59■□□□□ 0.25
CAPN3-221ENST00000638141 RTL5Q5HYW3 569 aaPredicted RBP16.59■□□□□ 0.25
CAPN3-221ENST00000638141 CCNB3Q8WWL7 1395 aa16.59■□□□□ 0.25
CAPN3-221ENST00000638141 DDX10Q13206 875 aaKnown RBP16.58■□□□□ 0.25
CAPN3-221ENST00000638141 WASHC2AQ641Q2 1341 aa16.57■□□□□ 0.24
CAPN3-221ENST00000638141 WDR97A6NE52 1622 aa16.57■□□□□ 0.24
CAPN3-221ENST00000638141 TOPBP1Q92547 1522 aa16.57■□□□□ 0.24
CAPN3-221ENST00000638141 CCDC136Q96JN2 1154 aa16.56■□□□□ 0.24
CAPN3-221ENST00000638141 CUX1P39880 1505 aa16.55■□□□□ 0.24
CAPN3-221ENST00000638141 IL27Q8NEV9 243 aa16.55■□□□□ 0.24
CAPN3-221ENST00000638141 DNMBPQ6XZF7 1577 aa16.55■□□□□ 0.24
CAPN3-221ENST00000638141 NBR1Q14596 966 aa16.55■□□□□ 0.24
CAPN3-221ENST00000638141 PAK3O75914 559 aaPredicted RBP16.53■□□□□ 0.24
CAPN3-221ENST00000638141 MAP3K1Q13233 1512 aa16.52■□□□□ 0.24
CAPN3-221ENST00000638141 USP35Q9P2H5 1018 aa16.5■□□□□ 0.23
CAPN3-221ENST00000638141 RAB3GAP2Q9H2M9 1393 aa16.5■□□□□ 0.23
CAPN3-221ENST00000638141 IPO9Q96P70 1041 aaKnown RBP16.5■□□□□ 0.23
CAPN3-221ENST00000638141 WASHC2CQ9Y4E1 1318 aa16.49■□□□□ 0.23
CAPN3-221ENST00000638141 PRXQ9BXM0 1461 aa16.48■□□□□ 0.23
CAPN3-221ENST00000638141 SETD5Q9C0A6 1442 aa16.48■□□□□ 0.23
CAPN3-221ENST00000638141 TOP2BQ02880 1626 aa16.46■□□□□ 0.23
CAPN3-221ENST00000638141 POLA1P09884 1462 aaPredicted RBP16.46■□□□□ 0.22
CAPN3-221ENST00000638141 FGD5Q6ZNL6 1462 aa16.46■□□□□ 0.22
CAPN3-221ENST00000638141 ANP32AP39687 249 aaKnown RBP16.45■□□□□ 0.22
CAPN3-221ENST00000638141 BIVM-ERCC5R4GMW8 1640 aa16.44■□□□□ 0.22
CAPN3-221ENST00000638141 KANK4Q5T7N3 995 aaPredicted RBP16.43■□□□□ 0.22
CAPN3-221ENST00000638141 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.43■□□□□ 0.22
CAPN3-221ENST00000638141 RAD54L2Q9Y4B4 1467 aa16.42■□□□□ 0.22
CAPN3-221ENST00000638141 ZBTB47Q9UFB7 747 aaPredicted RBP16.41■□□□□ 0.22
CAPN3-221ENST00000638141 HNRNPUQ00839 825 aaKnown RBP eCLIP16.39■□□□□ 0.21
CAPN3-221ENST00000638141 IRX6P78412 446 aaPredicted RBP16.38■□□□□ 0.21
CAPN3-221ENST00000638141 PKNOX2Q96KN3 472 aa16.38■□□□□ 0.21
CAPN3-221ENST00000638141 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
CAPN3-221ENST00000638141 IFT140Q96RY7 1462 aa16.37■□□□□ 0.21
CAPN3-221ENST00000638141 RTN4Q9NQC3 1192 aaKnown RBP16.36■□□□□ 0.21
CAPN3-221ENST00000638141 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
CAPN3-221ENST00000638141 ZNF608Q9ULD9 1512 aaPredicted RBP16.35■□□□□ 0.21
CAPN3-221ENST00000638141 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
CAPN3-221ENST00000638141 B4GALNT3Q6L9W6 998 aa16.33■□□□□ 0.2
CAPN3-221ENST00000638141 RSPH6AQ9H0K4 717 aa16.32■□□□□ 0.2
CAPN3-221ENST00000638141 TDRD9Q8NDG6 1382 aaKnown RBP16.31■□□□□ 0.2
CAPN3-221ENST00000638141 FHAD1B1AJZ9 1412 aa16.31■□□□□ 0.2
CAPN3-221ENST00000638141 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.3■□□□□ 0.2
CAPN3-221ENST00000638141 AQRO60306 1485 aaKnown RBP eCLIP16.29■□□□□ 0.2
CAPN3-221ENST00000638141 ARHGAP35Q9NRY4 1499 aa16.29■□□□□ 0.2
CAPN3-221ENST00000638141 ZBED9Q6R2W3 1325 aa16.28■□□□□ 0.2
CAPN3-221ENST00000638141 PPM1GO15355 546 aaPredicted RBP16.28■□□□□ 0.2
CAPN3-221ENST00000638141 ABCA10Q8WWZ4 1543 aa16.28■□□□□ 0.2
CAPN3-221ENST00000638141 CFAP43Q8NDM7 1665 aa16.26■□□□□ 0.19
CAPN3-221ENST00000638141 EIF4G3O43432 1585 aaKnown RBP16.25■□□□□ 0.19
CAPN3-221ENST00000638141 LRRC9Q6ZRR7 1453 aa16.24■□□□□ 0.19
CAPN3-221ENST00000638141 PLPPR3Q6T4P5 718 aa16.23■□□□□ 0.19
CAPN3-221ENST00000638141 NCOA2Q15596 1464 aa16.23■□□□□ 0.19
CAPN3-221ENST00000638141 RNF123Q5XPI4 1314 aa16.23■□□□□ 0.19
CAPN3-221ENST00000638141 NEFMP07197 916 aa16.23■□□□□ 0.19
CAPN3-221ENST00000638141 SIN3AQ96ST3 1273 aa16.23■□□□□ 0.19
CAPN3-221ENST00000638141 GLIPR1L2Q4G1C9 344 aa16.22■□□□□ 0.19
CAPN3-221ENST00000638141 NCBP3Q53F19 620 aaKnown RBP16.22■□□□□ 0.19
CAPN3-221ENST00000638141 TONSLQ96HA7 1378 aa16.21■□□□□ 0.19
CAPN3-221ENST00000638141 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
CAPN3-221ENST00000638141 SMG6Q86US8 1419 aaKnown RBP16.2■□□□□ 0.18
CAPN3-221ENST00000638141 ABCA5Q8WWZ7 1642 aa16.2■□□□□ 0.18
CAPN3-221ENST00000638141 KIF27Q86VH2 1401 aa16.19■□□□□ 0.18
CAPN3-221ENST00000638141 FAM43AQ8N2R8 423 aa16.19■□□□□ 0.18
CAPN3-221ENST00000638141 GSE1Q14687 1217 aa16.18■□□□□ 0.18
CAPN3-221ENST00000638141 BRPF3Q9ULD4 1205 aa16.16■□□□□ 0.18
CAPN3-221ENST00000638141 RANGAP1P46060 587 aaPredicted RBP16.15■□□□□ 0.18
CAPN3-221ENST00000638141 CNTLNQ9NXG0 1405 aa16.15■□□□□ 0.18
CAPN3-221ENST00000638141 PBRM1Q86U86 1689 aa16.15■□□□□ 0.18
CAPN3-221ENST00000638141 GRIN2BQ13224 1484 aa16.14■□□□□ 0.17
CAPN3-221ENST00000638141 PHLDB1Q86UU1 1377 aa16.14■□□□□ 0.17
CAPN3-221ENST00000638141 DNAJC5Q9H3Z4 198 aa16.13■□□□□ 0.17
CAPN3-221ENST00000638141 UACAQ9BZF9 1416 aa16.13■□□□□ 0.17
CAPN3-221ENST00000638141 KDM5BQ9UGL1 1544 aa16.13■□□□□ 0.17
CAPN3-221ENST00000638141 HIRIP3Q9BW71 556 aaPredicted RBP16.12■□□□□ 0.17
CAPN3-221ENST00000638141 SNAPC4Q5SXM2 1469 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms