RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 NISCHQ9Y2I1 1504 aa22.89■■□□□ 1.25
CAPN3-221ENST00000638141 PELP1Q8IZL8 1130 aaKnown RBP20.61■□□□□ 0.89
CAPN3-221ENST00000638141 HRCP23327 699 aa20.46■□□□□ 0.87
CAPN3-221ENST00000638141 CCDC180Q9P1Z9 1646 aa20.17■□□□□ 0.82
CAPN3-221ENST00000638141 MYT1Q01538 1121 aa20.05■□□□□ 0.8
CAPN3-221ENST00000638141 PPARGC1BQ86YN6 1023 aaKnown RBP19.65■□□□□ 0.74
CAPN3-221ENST00000638141 ABCC9O60706 1549 aa19.6■□□□□ 0.73
CAPN3-221ENST00000638141 PCGF6Q9BYE7 350 aa19.56■□□□□ 0.72
CAPN3-221ENST00000638141 MYO15BQ96JP2 1530 aa19.53■□□□□ 0.72
CAPN3-221ENST00000638141 DCAF1Q9Y4B6 1507 aa19.48■□□□□ 0.71
CAPN3-221ENST00000638141 SCAF1Q9H7N4 1312 aaKnown RBP19.44■□□□□ 0.7
CAPN3-221ENST00000638141 ZEB1P37275 1124 aaPredicted RBP19.25■□□□□ 0.67
CAPN3-221ENST00000638141 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
CAPN3-221ENST00000638141 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
CAPN3-221ENST00000638141 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
CAPN3-221ENST00000638141 DCAF8L2P0C7V8 631 aa19.14■□□□□ 0.65
CAPN3-221ENST00000638141 ZCCHC6Q5VYS8 1495 aaKnown RBP19.1■□□□□ 0.65
CAPN3-221ENST00000638141 TRIM26Q12899 539 aaPredicted RBP19.1■□□□□ 0.65
CAPN3-221ENST00000638141 TTBK1Q5TCY1 1321 aaPredicted RBP19.04■□□□□ 0.64
CAPN3-221ENST00000638141 ACIN1Q9UKV3 1341 aaKnown RBP18.95■□□□□ 0.62
CAPN3-221ENST00000638141 NACADO15069 1562 aa18.91■□□□□ 0.62
CAPN3-221ENST00000638141 RB1CC1Q8TDY2 1594 aa18.88■□□□□ 0.61
CAPN3-221ENST00000638141 NEUROD1Q13562 356 aa18.74■□□□□ 0.59
CAPN3-221ENST00000638141 CENPBP07199 599 aaPredicted RBP18.69■□□□□ 0.58
CAPN3-221ENST00000638141 GTF3C3Q9Y5Q9 886 aa18.68■□□□□ 0.58
CAPN3-221ENST00000638141 LOC105371045A0A1W2PR82 267 aa18.56■□□□□ 0.56
CAPN3-221ENST00000638141 UNC13AQ9UPW8 1703 aa18.53■□□□□ 0.56
CAPN3-221ENST00000638141 SCRIBQ14160 1630 aa18.53■□□□□ 0.56
CAPN3-221ENST00000638141 PABPN1Q86U42 306 aaKnown RBP eCLIP18.4■□□□□ 0.54
CAPN3-221ENST00000638141 BICRAQ9NZM4 1560 aa18.34■□□□□ 0.53
CAPN3-221ENST00000638141 DIEXFQ68CQ4 756 aaKnown RBP18.33■□□□□ 0.52
CAPN3-221ENST00000638141 BCL11AQ9H165 835 aa18.29■□□□□ 0.52
CAPN3-221ENST00000638141 SLC24A1O60721 1099 aa18.28■□□□□ 0.52
CAPN3-221ENST00000638141 TRIM41Q8WV44 630 aa18.16■□□□□ 0.5
CAPN3-221ENST00000638141 CLSPNQ9HAW4 1339 aa18.14■□□□□ 0.49
CAPN3-221ENST00000638141 ANP32EQ9BTT0 268 aa18.13■□□□□ 0.49
CAPN3-221ENST00000638141 FAM9AQ8IZU1 332 aaPredicted RBP18.08■□□□□ 0.48
CAPN3-221ENST00000638141 CCER1Q8TC90 406 aaPredicted RBP18.04■□□□□ 0.48
CAPN3-221ENST00000638141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.97■□□□□ 0.47
CAPN3-221ENST00000638141 ZNF316A6NFI3 1004 aaPredicted RBP17.96■□□□□ 0.47
CAPN3-221ENST00000638141 PRKCSHP14314 528 aaPredicted RBP17.86■□□□□ 0.45
CAPN3-221ENST00000638141 CECR2Q9BXF3 1484 aa17.86■□□□□ 0.45
CAPN3-221ENST00000638141 RSF1Q96T23 1441 aaPredicted RBP17.84■□□□□ 0.45
CAPN3-221ENST00000638141 EIF4G1Q04637 1599 aaKnown RBP17.84■□□□□ 0.45
CAPN3-221ENST00000638141 TSHZ2Q9NRE2 1034 aa17.81■□□□□ 0.44
CAPN3-221ENST00000638141 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
CAPN3-221ENST00000638141 YTHDC1Q96MU7 727 aaKnown RBP17.8■□□□□ 0.44
CAPN3-221ENST00000638141 DNAJC5BQ9UF47 199 aa17.8■□□□□ 0.44
CAPN3-221ENST00000638141 CSRNP3Q8WYN3 585 aa17.79■□□□□ 0.44
CAPN3-221ENST00000638141 SUPT16HQ9Y5B9 1047 aaKnown RBP17.77■□□□□ 0.44
CAPN3-221ENST00000638141 MIER1Q8N108 512 aa17.75■□□□□ 0.43
CAPN3-221ENST00000638141 ERICH6Q7L0X2 663 aa17.74■□□□□ 0.43
CAPN3-221ENST00000638141 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
CAPN3-221ENST00000638141 BAZ1AQ9NRL2 1556 aaPredicted RBP17.7■□□□□ 0.42
CAPN3-221ENST00000638141 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
CAPN3-221ENST00000638141 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
CAPN3-221ENST00000638141 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
CAPN3-221ENST00000638141 APLP2Q06481 763 aa17.52■□□□□ 0.4
CAPN3-221ENST00000638141 WIZO95785 1651 aa17.51■□□□□ 0.39
CAPN3-221ENST00000638141 SMARCA2P51531 1590 aa17.5■□□□□ 0.39
CAPN3-221ENST00000638141 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
CAPN3-221ENST00000638141 NCAPD3P42695 1498 aa17.47■□□□□ 0.39
CAPN3-221ENST00000638141 CEP162Q5TB80 1403 aa17.44■□□□□ 0.38
CAPN3-221ENST00000638141 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
CAPN3-221ENST00000638141 MYT1LQ9UL68 1186 aa17.43■□□□□ 0.38
CAPN3-221ENST00000638141 BAZ1BQ9UIG0 1483 aaKnown RBP17.41■□□□□ 0.38
CAPN3-221ENST00000638141 HMGXB3Q12766 1538 aa17.38■□□□□ 0.37
CAPN3-221ENST00000638141 EEA1Q15075 1411 aa17.38■□□□□ 0.37
CAPN3-221ENST00000638141 RBM19Q9Y4C8 960 aaKnown RBP17.33■□□□□ 0.37
CAPN3-221ENST00000638141 EHMT2Q96KQ7 1210 aa17.31■□□□□ 0.36
CAPN3-221ENST00000638141 TOP2AP11388 1531 aaKnown RBP17.28■□□□□ 0.36
CAPN3-221ENST00000638141 FANCIQ9NVI1 1328 aa17.25■□□□□ 0.35
CAPN3-221ENST00000638141 MSH5O43196 834 aa17.2■□□□□ 0.34
CAPN3-221ENST00000638141 GOLGA3Q08378 1498 aa17.19■□□□□ 0.34
CAPN3-221ENST00000638141 ERICH6BQ5W0A0 696 aa17.15■□□□□ 0.34
CAPN3-221ENST00000638141 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
CAPN3-221ENST00000638141 FKBP8Q14318 412 aa17.11■□□□□ 0.33
CAPN3-221ENST00000638141 ABCC8Q09428 1581 aa17.08■□□□□ 0.32
CAPN3-221ENST00000638141 KIF21BO75037 1637 aa17.08■□□□□ 0.32
CAPN3-221ENST00000638141 NEFLP07196 543 aa17.06■□□□□ 0.32
CAPN3-221ENST00000638141 NESP48681 1621 aa17.05■□□□□ 0.32
CAPN3-221ENST00000638141 BCANQ96GW7 911 aa17.04■□□□□ 0.32
CAPN3-221ENST00000638141 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
CAPN3-221ENST00000638141 DEKP35659 375 aaKnown RBP17.03■□□□□ 0.32
CAPN3-221ENST00000638141 SOGA1O94964 1423 aa17.02■□□□□ 0.32
CAPN3-221ENST00000638141 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.31
CAPN3-221ENST00000638141 DHX57Q6P158 1386 aaKnown RBP17.01■□□□□ 0.31
CAPN3-221ENST00000638141 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
CAPN3-221ENST00000638141 CADPSQ9ULU8 1353 aa16.99■□□□□ 0.31
CAPN3-221ENST00000638141 ANO8Q9HCE9 1232 aaPredicted RBP16.98■□□□□ 0.31
CAPN3-221ENST00000638141 LAMC3Q9Y6N6 1575 aa16.96■□□□□ 0.31
CAPN3-221ENST00000638141 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
CAPN3-221ENST00000638141 CUX2O14529 1486 aa16.95■□□□□ 0.3
CAPN3-221ENST00000638141 CFTRP13569 1480 aa16.94■□□□□ 0.3
CAPN3-221ENST00000638141 CLIP1P30622 1438 aa16.94■□□□□ 0.3
CAPN3-221ENST00000638141 UBE2Q2Q8WVN8 375 aa16.93■□□□□ 0.3
CAPN3-221ENST00000638141 CDK11AQ9UQ88 783 aaPredicted RBP16.88■□□□□ 0.29
CAPN3-221ENST00000638141 DAXXQ9UER7 740 aaPredicted RBP16.86■□□□□ 0.29
CAPN3-221ENST00000638141 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
CAPN3-221ENST00000638141 CCER2I3L3R5 266 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms