RNA–Protein interactions for RNA: ENST00000637004.1

CACNA1A-235, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,829 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-235ENST00000637004 RAD54L2Q9Y4B4 1467 aa22.2■■□□□ 1.14
CACNA1A-235ENST00000637004 KANK4Q5T7N3 995 aaPredicted RBP22.2■■□□□ 1.14
CACNA1A-235ENST00000637004 WDR62O43379 1518 aa22.16■■□□□ 1.14
CACNA1A-235ENST00000637004 FKBP8Q14318 412 aa22.16■■□□□ 1.14
CACNA1A-235ENST00000637004 FGD5Q6ZNL6 1462 aa22.16■■□□□ 1.14
CACNA1A-235ENST00000637004 CCNB3Q8WWL7 1395 aa22.16■■□□□ 1.14
CACNA1A-235ENST00000637004 KCNH8Q96L42 1107 aa22.15■■□□□ 1.14
CACNA1A-235ENST00000637004 POLA1P09884 1462 aaPredicted RBP22.14■■□□□ 1.13
CACNA1A-235ENST00000637004 PRXQ9BXM0 1461 aa22.14■■□□□ 1.13
CACNA1A-235ENST00000637004 BCANQ96GW7 911 aa22.14■■□□□ 1.13
CACNA1A-235ENST00000637004 DNMBPQ6XZF7 1577 aa22.13■■□□□ 1.13
CACNA1A-235ENST00000637004 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
CACNA1A-235ENST00000637004 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
CACNA1A-235ENST00000637004 NEFLP07196 543 aa22.12■■□□□ 1.13
CACNA1A-235ENST00000637004 ZNF608Q9ULD9 1512 aaPredicted RBP22.07■■□□□ 1.12
CACNA1A-235ENST00000637004 RBM19Q9Y4C8 960 aaKnown RBP22.06■■□□□ 1.12
CACNA1A-235ENST00000637004 AQRO60306 1485 aaKnown RBP eCLIP22.05■■□□□ 1.12
CACNA1A-235ENST00000637004 RAB3GAP2Q9H2M9 1393 aa22.03■■□□□ 1.12
CACNA1A-235ENST00000637004 MAPKBP1O60336 1514 aa22.01■■□□□ 1.11
CACNA1A-235ENST00000637004 DDX10Q13206 875 aaKnown RBP22.01■■□□□ 1.11
CACNA1A-235ENST00000637004 BIVM-ERCC5R4GMW8 1640 aa22■■□□□ 1.11
CACNA1A-235ENST00000637004 ITGAEP38570 1179 aa21.99■■□□□ 1.11
CACNA1A-235ENST00000637004 CCER2I3L3R5 266 aa21.98■■□□□ 1.11
CACNA1A-235ENST00000637004 ERICH6Q7L0X2 663 aa21.98■■□□□ 1.11
CACNA1A-235ENST00000637004 FBLN2P98095 1184 aa21.96■■□□□ 1.11
CACNA1A-235ENST00000637004 TIMELESSQ9UNS1 1208 aa21.96■■□□□ 1.11
CACNA1A-235ENST00000637004 PPP1R15AO75807 674 aaPredicted RBP21.95■■□□□ 1.1
CACNA1A-235ENST00000637004 SETD5Q9C0A6 1442 aa21.94■■□□□ 1.1
CACNA1A-235ENST00000637004 IFT140Q96RY7 1462 aa21.93■■□□□ 1.1
CACNA1A-235ENST00000637004 KIF27Q86VH2 1401 aa21.91■■□□□ 1.1
CACNA1A-235ENST00000637004 ARHGAP35Q9NRY4 1499 aa21.91■■□□□ 1.1
CACNA1A-235ENST00000637004 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
CACNA1A-235ENST00000637004 ANP32CO43423 234 aa21.9■■□□□ 1.1
CACNA1A-235ENST00000637004 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
CACNA1A-235ENST00000637004 MAP3K1Q13233 1512 aa21.87■■□□□ 1.09
CACNA1A-235ENST00000637004 TRIM52Q96A61 297 aa21.85■■□□□ 1.09
CACNA1A-235ENST00000637004 SIN3AQ96ST3 1273 aa21.82■■□□□ 1.08
CACNA1A-235ENST00000637004 ABCA10Q8WWZ4 1543 aa21.81■■□□□ 1.08
CACNA1A-235ENST00000637004 GAPVD1Q14C86 1478 aa21.8■■□□□ 1.08
CACNA1A-235ENST00000637004 FANCIQ9NVI1 1328 aa21.8■■□□□ 1.08
CACNA1A-235ENST00000637004 TIAM1Q13009 1591 aa21.79■■□□□ 1.08
CACNA1A-235ENST00000637004 EIF4G3O43432 1585 aaKnown RBP21.79■■□□□ 1.08
CACNA1A-235ENST00000637004 MSH5O43196 834 aa21.75■■□□□ 1.07
CACNA1A-235ENST00000637004 LRRC9Q6ZRR7 1453 aa21.74■■□□□ 1.07
CACNA1A-235ENST00000637004 CHMP7Q8WUX9 453 aaPredicted RBP21.73■■□□□ 1.07
CACNA1A-235ENST00000637004 CDK11AQ9UQ88 783 aaPredicted RBP21.73■■□□□ 1.07
CACNA1A-235ENST00000637004 FAM50AQ14320 339 aaKnown RBP21.71■■□□□ 1.07
CACNA1A-235ENST00000637004 IGF1RP08069 1367 aa21.71■■□□□ 1.07
CACNA1A-235ENST00000637004 PHLDB1Q86UU1 1377 aa21.71■■□□□ 1.07
CACNA1A-235ENST00000637004 SNAPC4Q5SXM2 1469 aa21.71■■□□□ 1.07
CACNA1A-235ENST00000637004 HIRIP3Q9BW71 556 aaPredicted RBP21.68■■□□□ 1.06
CACNA1A-235ENST00000637004 MYT1LQ9UL68 1186 aa21.67■■□□□ 1.06
CACNA1A-235ENST00000637004 GRIN2BQ13224 1484 aa21.67■■□□□ 1.06
CACNA1A-235ENST00000637004 ERICH6BQ5W0A0 696 aa21.65■■□□□ 1.06
CACNA1A-235ENST00000637004 FHAD1B1AJZ9 1412 aa21.64■■□□□ 1.05
CACNA1A-235ENST00000637004 ABCA5Q8WWZ7 1642 aa21.63■■□□□ 1.05
CACNA1A-235ENST00000637004 TONSLQ96HA7 1378 aa21.62■■□□□ 1.05
CACNA1A-235ENST00000637004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.6■■□□□ 1.05
CACNA1A-235ENST00000637004 CARMIL1Q5VZK9 1371 aa21.59■■□□□ 1.05
CACNA1A-235ENST00000637004 HNRNPUQ00839 825 aaKnown RBP eCLIP21.59■■□□□ 1.05
CACNA1A-235ENST00000637004 PBRM1Q86U86 1689 aa21.55■■□□□ 1.04
CACNA1A-235ENST00000637004 CFAP43Q8NDM7 1665 aa21.55■■□□□ 1.04
CACNA1A-235ENST00000637004 OSCARQ8IYS5 282 aa21.54■■□□□ 1.04
CACNA1A-235ENST00000637004 PPP4R2Q9NY27 417 aa21.52■■□□□ 1.04
CACNA1A-235ENST00000637004 IRX6P78412 446 aaPredicted RBP21.49■■□□□ 1.03
CACNA1A-235ENST00000637004 MAGI1Q96QZ7 1491 aaPredicted RBP21.49■■□□□ 1.03
CACNA1A-235ENST00000637004 SYNJ2O15056 1496 aa21.48■■□□□ 1.03
CACNA1A-235ENST00000637004 PCF11O94913 1555 aaKnown RBP21.46■■□□□ 1.03
CACNA1A-235ENST00000637004 UACAQ9BZF9 1416 aa21.46■■□□□ 1.03
CACNA1A-235ENST00000637004 CCDC18Q5T9S5 1454 aa21.44■■□□□ 1.02
CACNA1A-235ENST00000637004 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
CACNA1A-235ENST00000637004 CHD1O14646 1710 aa21.43■■□□□ 1.02
CACNA1A-235ENST00000637004 ATP1B4Q9UN42 357 aaPredicted RBP21.43■■□□□ 1.02
CACNA1A-235ENST00000637004 GRIN2AQ12879 1464 aa21.43■■□□□ 1.02
CACNA1A-235ENST00000637004 FYCO1Q9BQS8 1478 aa21.42■■□□□ 1.02
CACNA1A-235ENST00000637004 HFM1A2PYH4 1435 aa21.41■■□□□ 1.02
CACNA1A-235ENST00000637004 FGD6Q6ZV73 1430 aa21.39■■□□□ 1.01
CACNA1A-235ENST00000637004 P3H3Q8IVL6 736 aa21.38■■□□□ 1.01
CACNA1A-235ENST00000637004 CASKIN1Q8WXD9 1431 aa21.38■■□□□ 1.01
CACNA1A-235ENST00000637004 DEKP35659 375 aaKnown RBP21.37■■□□□ 1.01
CACNA1A-235ENST00000637004 WASHC2AQ641Q2 1341 aa21.34■■□□□ 1.01
CACNA1A-235ENST00000637004 EFCAB5A4FU69 1503 aa21.33■■□□□ 1.01
CACNA1A-235ENST00000637004 FHOD3Q2V2M9 1422 aa21.32■■□□□ 1
CACNA1A-235ENST00000637004 PTPN23Q9H3S7 1636 aa21.32■■□□□ 1
CACNA1A-235ENST00000637004 KDM5BQ9UGL1 1544 aa21.31■■□□□ 1
CACNA1A-235ENST00000637004 CEP170Q5SW79 1584 aa21.31■■□□□ 1
CACNA1A-235ENST00000637004 HSPA5P11021 654 aaKnown RBP21.31■■□□□ 1
CACNA1A-235ENST00000637004 JPH4Q96JJ6 628 aa21.31■■□□□ 1
CACNA1A-235ENST00000637004 CUL7Q14999 1698 aa21.3■■□□□ 1
CACNA1A-235ENST00000637004 NOP58Q9Y2X3 529 aaKnown RBP21.3■■□□□ 1
CACNA1A-235ENST00000637004 NCOA2Q15596 1464 aa21.3■■□□□ 1
CACNA1A-235ENST00000637004 ZBED9Q6R2W3 1325 aa21.29■■□□□ 1
CACNA1A-235ENST00000637004 CNTLNQ9NXG0 1405 aa21.29■■□□□ 1
CACNA1A-235ENST00000637004 EIF4G2P78344 907 aaKnown RBP eCLIP21.28■■□□□ 1
CACNA1A-235ENST00000637004 B4GALNT3Q6L9W6 998 aa21.28■■□□□ 1
CACNA1A-235ENST00000637004 NAIPQ13075 1403 aa21.28■■□□□ 1
CACNA1A-235ENST00000637004 PTPRKQ15262 1439 aa21.27■□□□□ 0.99
CACNA1A-235ENST00000637004 FMN1Q68DA7 1419 aa21.27■□□□□ 0.99
CACNA1A-235ENST00000637004 DNAJC5Q9H3Z4 198 aa21.26■□□□□ 0.99
CACNA1A-235ENST00000637004 MTUS2Q5JR59 1369 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms