RNA–Protein interactions for RNA: ENST00000624341.3

ERCC6-213, Transcript of ERCC excision repair 6, chromatin remodeling factor, humanhuman

TSL 1 (best)

Gene ERCC6, Length 5,761 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC6-213ENST00000624341 BCL11AQ9H165 835 aa7.74□□□□□ -1.17
ERCC6-213ENST00000624341 ARID3CA6NKF2 412 aa7.72□□□□□ -1.17
ERCC6-213ENST00000624341 NBR1Q14596 966 aa7.72□□□□□ -1.17
ERCC6-213ENST00000624341 FAM9BQ8IZU0 186 aa7.72□□□□□ -1.17
ERCC6-213ENST00000624341 CANXP27824 592 aaKnown RBP7.71□□□□□ -1.17
ERCC6-213ENST00000624341 IFT140Q96RY7 1462 aa7.71□□□□□ -1.18
ERCC6-213ENST00000624341 IRX6P78412 446 aaPredicted RBP7.69□□□□□ -1.18
ERCC6-213ENST00000624341 URB2Q14146 1524 aaKnown RBP7.69□□□□□ -1.18
ERCC6-213ENST00000624341 OSCARQ8IYS5 282 aa7.68□□□□□ -1.18
ERCC6-213ENST00000624341 CCDC88BA6NC98 1476 aa7.68□□□□□ -1.18
ERCC6-213ENST00000624341 SALL2Q9Y467 1007 aaPredicted RBP7.68□□□□□ -1.18
ERCC6-213ENST00000624341 HIRIP3Q9BW71 556 aaPredicted RBP7.68□□□□□ -1.18
ERCC6-213ENST00000624341 TONSLQ96HA7 1378 aa7.68□□□□□ -1.18
ERCC6-213ENST00000624341 ZBTB47Q9UFB7 747 aaPredicted RBP7.67□□□□□ -1.18
ERCC6-213ENST00000624341 DNMBPQ6XZF7 1577 aa7.67□□□□□ -1.18
ERCC6-213ENST00000624341 WDR97A6NE52 1622 aa7.66□□□□□ -1.18
ERCC6-213ENST00000624341 CCDC136Q96JN2 1154 aa7.66□□□□□ -1.18
ERCC6-213ENST00000624341 TOPBP1Q92547 1522 aa7.64□□□□□ -1.19
ERCC6-213ENST00000624341 ZNF777Q9ULD5 760 aaPredicted RBP7.64□□□□□ -1.19
ERCC6-213ENST00000624341 FBLN2P98095 1184 aa7.63□□□□□ -1.19
ERCC6-213ENST00000624341 ANP32EQ9BTT0 268 aa7.62□□□□□ -1.19
ERCC6-213ENST00000624341 MRS2Q9HD23 443 aa7.62□□□□□ -1.19
ERCC6-213ENST00000624341 ARXQ96QS3 562 aa7.61□□□□□ -1.19
ERCC6-213ENST00000624341 TMC1Q8TDI8 760 aa7.6□□□□□ -1.19
ERCC6-213ENST00000624341 EIF4G3O43432 1585 aaKnown RBP7.6□□□□□ -1.19
ERCC6-213ENST00000624341 CHIC2Q9UKJ5 165 aa7.6□□□□□ -1.19
ERCC6-213ENST00000624341 SLC24A1O60721 1099 aa7.59□□□□□ -1.19
ERCC6-213ENST00000624341 HSP90AA1P07900 732 aaKnown RBP7.58□□□□□ -1.2
ERCC6-213ENST00000624341 RIMBP3CA6NJZ7 1639 aa7.58□□□□□ -1.2
ERCC6-213ENST00000624341 RIMBP3BA6NNM3 1639 aa7.58□□□□□ -1.2
ERCC6-213ENST00000624341 RIMBP3Q9UFD9 1639 aa7.58□□□□□ -1.2
ERCC6-213ENST00000624341 TARBP1Q13395 1621 aaKnown RBP7.57□□□□□ -1.2
ERCC6-213ENST00000624341 NEFMP07197 916 aa7.57□□□□□ -1.2
ERCC6-213ENST00000624341 SENP3-EIF4A1A0A087X0R7 540 aa7.57□□□□□ -1.2
ERCC6-213ENST00000624341 UPF2Q9HAU5 1272 aaKnown RBP7.57□□□□□ -1.2
ERCC6-213ENST00000624341 ANP32BQ92688 251 aaKnown RBP7.57□□□□□ -1.2
ERCC6-213ENST00000624341 SUPT16HQ9Y5B9 1047 aaKnown RBP7.56□□□□□ -1.2
ERCC6-213ENST00000624341 CHD1O14646 1710 aa7.55□□□□□ -1.2
ERCC6-213ENST00000624341 ZNF608Q9ULD9 1512 aaPredicted RBP7.55□□□□□ -1.2
ERCC6-213ENST00000624341 POLA1P09884 1462 aaPredicted RBP7.54□□□□□ -1.2
ERCC6-213ENST00000624341 SOGA1O94964 1423 aa7.54□□□□□ -1.2
ERCC6-213ENST00000624341 GLIPR1L2Q4G1C9 344 aa7.54□□□□□ -1.2
ERCC6-213ENST00000624341 SYNJ1O43426 1573 aa7.53□□□□□ -1.2
ERCC6-213ENST00000624341 CLIP1P30622 1438 aa7.53□□□□□ -1.2
ERCC6-213ENST00000624341 MAGI1Q96QZ7 1491 aaPredicted RBP7.53□□□□□ -1.2
ERCC6-213ENST00000624341 KDM2AQ9Y2K7 1162 aa7.53□□□□□ -1.2
ERCC6-213ENST00000624341 ARHGEF11O15085 1522 aa7.53□□□□□ -1.2
ERCC6-213ENST00000624341 EIF4G2P78344 907 aaKnown RBP eCLIP7.52□□□□□ -1.21
ERCC6-213ENST00000624341 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.52□□□□□ -1.21
ERCC6-213ENST00000624341 GRIN2BQ13224 1484 aa7.51□□□□□ -1.21
ERCC6-213ENST00000624341 CEP162Q5TB80 1403 aa7.51□□□□□ -1.21
ERCC6-213ENST00000624341 FGD5Q6ZNL6 1462 aa7.51□□□□□ -1.21
ERCC6-213ENST00000624341 AQRO60306 1485 aaKnown RBP eCLIP7.5□□□□□ -1.21
ERCC6-213ENST00000624341 PBRM1Q86U86 1689 aa7.5□□□□□ -1.21
ERCC6-213ENST00000624341 RTN4Q9NQC3 1192 aaKnown RBP7.5□□□□□ -1.21
ERCC6-213ENST00000624341 CHGAP10645 457 aaKnown RBP7.49□□□□□ -1.21
ERCC6-213ENST00000624341 WDR43Q15061 677 aaKnown RBP eCLIP7.49□□□□□ -1.21
ERCC6-213ENST00000624341 BIVM-ERCC5R4GMW8 1640 aa7.49□□□□□ -1.21
ERCC6-213ENST00000624341 RRP7BPQ9NSQ0 103 aa7.49□□□□□ -1.21
ERCC6-213ENST00000624341 SNAPC4Q5SXM2 1469 aa7.49□□□□□ -1.21
ERCC6-213ENST00000624341 CUX1P39880 1505 aa7.48□□□□□ -1.21
ERCC6-213ENST00000624341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.48□□□□□ -1.21
ERCC6-213ENST00000624341 SYNJ2O15056 1496 aa7.48□□□□□ -1.21
ERCC6-213ENST00000624341 SIN3AQ96ST3 1273 aa7.48□□□□□ -1.21
ERCC6-213ENST00000624341 RAD54L2Q9Y4B4 1467 aa7.48□□□□□ -1.21
ERCC6-213ENST00000624341 CHMP7Q8WUX9 453 aaPredicted RBP7.47□□□□□ -1.21
ERCC6-213ENST00000624341 CLASP1Q7Z460 1538 aa7.47□□□□□ -1.21
ERCC6-213ENST00000624341 LAS1LQ9Y4W2 734 aaKnown RBP7.47□□□□□ -1.21
ERCC6-213ENST00000624341 MTUS2Q5JR59 1369 aa7.47□□□□□ -1.21
ERCC6-213ENST00000624341 B4GALNT3Q6L9W6 998 aa7.46□□□□□ -1.22
ERCC6-213ENST00000624341 ABCA10Q8WWZ4 1543 aa7.45□□□□□ -1.22
ERCC6-213ENST00000624341 PPP4R2Q9NY27 417 aa7.45□□□□□ -1.22
ERCC6-213ENST00000624341 GAPVD1Q14C86 1478 aa7.45□□□□□ -1.22
ERCC6-213ENST00000624341 TOP2BQ02880 1626 aa7.45□□□□□ -1.22
ERCC6-213ENST00000624341 DDRGK1Q96HY6 314 aa7.45□□□□□ -1.22
ERCC6-213ENST00000624341 RBM19Q9Y4C8 960 aaKnown RBP7.45□□□□□ -1.22
ERCC6-213ENST00000624341 ABCA5Q8WWZ7 1642 aa7.44□□□□□ -1.22
ERCC6-213ENST00000624341 TDRD9Q8NDG6 1382 aaKnown RBP7.44□□□□□ -1.22
ERCC6-213ENST00000624341 NOP58Q9Y2X3 529 aaKnown RBP7.44□□□□□ -1.22
ERCC6-213ENST00000624341 WRNQ14191 1432 aaPredicted RBP eCLIP7.43□□□□□ -1.22
ERCC6-213ENST00000624341 ARAP1Q96P48 1450 aa7.43□□□□□ -1.22
ERCC6-213ENST00000624341 TSPY4P0CV99 314 aa7.42□□□□□ -1.22
ERCC6-213ENST00000624341 TSPY10P0CW01 314 aa7.42□□□□□ -1.22
ERCC6-213ENST00000624341 BECN1Q14457 450 aa7.42□□□□□ -1.22
ERCC6-213ENST00000624341 CYB5RLQ6IPT4 315 aa7.42□□□□□ -1.22
ERCC6-213ENST00000624341 GOLGA3Q08378 1498 aa7.42□□□□□ -1.22
ERCC6-213ENST00000624341 PPM1GO15355 546 aaPredicted RBP7.42□□□□□ -1.22
ERCC6-213ENST00000624341 TNIKQ9UKE5 1360 aa7.41□□□□□ -1.22
ERCC6-213ENST00000624341 TRIM44Q96DX7 344 aaPredicted RBP7.41□□□□□ -1.22
ERCC6-213ENST00000624341 DEKP35659 375 aaKnown RBP7.41□□□□□ -1.22
ERCC6-213ENST00000624341 ADAMTS12P58397 1594 aa7.4□□□□□ -1.22
ERCC6-213ENST00000624341 RGL3Q3MIN7 710 aa7.4□□□□□ -1.22
ERCC6-213ENST00000624341 ERICH3Q5RHP9 1530 aa7.4□□□□□ -1.22
ERCC6-213ENST00000624341 RGS3P49796 1198 aa7.4□□□□□ -1.23
ERCC6-213ENST00000624341 TRHP20396 242 aaPredicted RBP7.4□□□□□ -1.23
ERCC6-213ENST00000624341 TSHZ2Q9NRE2 1034 aa7.39□□□□□ -1.23
ERCC6-213ENST00000624341 EEA1Q15075 1411 aa7.39□□□□□ -1.23
ERCC6-213ENST00000624341 FHAD1B1AJZ9 1412 aa7.39□□□□□ -1.23
ERCC6-213ENST00000624341 ERICH6BQ5W0A0 696 aa7.39□□□□□ -1.23
ERCC6-213ENST00000624341 STAG3Q9UJ98 1225 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms