RNA–Protein interactions for RNA: ENST00000624341.3

ERCC6-213, Transcript of ERCC excision repair 6, chromatin remodeling factor, humanhuman

TSL 1 (best)

Gene ERCC6, Length 5,761 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC6-213ENST00000624341 NISCHQ9Y2I1 1504 aa10.37□□□□□ -0.75
ERCC6-213ENST00000624341 DCAF8L2P0C7V8 631 aa9.56□□□□□ -0.88
ERCC6-213ENST00000624341 CCDC180Q9P1Z9 1646 aa9.43□□□□□ -0.9
ERCC6-213ENST00000624341 SUPT5HO00267 1087 aaKnown RBP9.33□□□□□ -0.92
ERCC6-213ENST00000624341 ABCC9O60706 1549 aa9.25□□□□□ -0.93
ERCC6-213ENST00000624341 SHROOM4Q9ULL8 1493 aa9.11□□□□□ -0.95
ERCC6-213ENST00000624341 EHMT2Q96KQ7 1210 aa9.05□□□□□ -0.96
ERCC6-213ENST00000624341 RB1CC1Q8TDY2 1594 aa8.96□□□□□ -0.98
ERCC6-213ENST00000624341 PCGF6Q9BYE7 350 aa8.93□□□□□ -0.98
ERCC6-213ENST00000624341 NACADO15069 1562 aa8.9□□□□□ -0.99
ERCC6-213ENST00000624341 PELP1Q8IZL8 1130 aaKnown RBP8.86□□□□□ -0.99
ERCC6-213ENST00000624341 FAM9AQ8IZU1 332 aaPredicted RBP8.81□□□□□ -1
ERCC6-213ENST00000624341 MYO15BQ96JP2 1530 aa8.78□□□□□ -1
ERCC6-213ENST00000624341 TTBK1Q5TCY1 1321 aaPredicted RBP8.77□□□□□ -1.01
ERCC6-213ENST00000624341 APLP2Q06481 763 aa8.7□□□□□ -1.02
ERCC6-213ENST00000624341 CENPBP07199 599 aaPredicted RBP8.69□□□□□ -1.02
ERCC6-213ENST00000624341 DCAF1Q9Y4B6 1507 aa8.68□□□□□ -1.02
ERCC6-213ENST00000624341 UNC13AQ9UPW8 1703 aa8.66□□□□□ -1.02
ERCC6-213ENST00000624341 ZEB1P37275 1124 aaPredicted RBP8.65□□□□□ -1.02
ERCC6-213ENST00000624341 ZCCHC6Q5VYS8 1495 aaKnown RBP8.65□□□□□ -1.03
ERCC6-213ENST00000624341 CCER1Q8TC90 406 aaPredicted RBP8.64□□□□□ -1.03
ERCC6-213ENST00000624341 TRIM41Q8WV44 630 aa8.58□□□□□ -1.04
ERCC6-213ENST00000624341 PABPN1Q86U42 306 aaKnown RBP eCLIP8.57□□□□□ -1.04
ERCC6-213ENST00000624341 YTHDC1Q96MU7 727 aaKnown RBP8.57□□□□□ -1.04
ERCC6-213ENST00000624341 BICRAQ9NZM4 1560 aa8.56□□□□□ -1.04
ERCC6-213ENST00000624341 DNAJC5BQ9UF47 199 aa8.56□□□□□ -1.04
ERCC6-213ENST00000624341 RANGAP1P46060 587 aaPredicted RBP8.56□□□□□ -1.04
ERCC6-213ENST00000624341 HRCP23327 699 aa8.55□□□□□ -1.04
ERCC6-213ENST00000624341 ERICH6Q7L0X2 663 aa8.54□□□□□ -1.04
ERCC6-213ENST00000624341 PPARGC1BQ86YN6 1023 aaKnown RBP8.52□□□□□ -1.05
ERCC6-213ENST00000624341 MYT1Q01538 1121 aa8.49□□□□□ -1.05
ERCC6-213ENST00000624341 SCRIBQ14160 1630 aa8.47□□□□□ -1.05
ERCC6-213ENST00000624341 TRIM26Q12899 539 aaPredicted RBP8.46□□□□□ -1.05
ERCC6-213ENST00000624341 UBTFP17480 764 aaKnown RBP8.44□□□□□ -1.06
ERCC6-213ENST00000624341 LOC105371045A0A1W2PR82 267 aa8.42□□□□□ -1.06
ERCC6-213ENST00000624341 CC2D2AQ9P2K1 1620 aa8.42□□□□□ -1.06
ERCC6-213ENST00000624341 NEFLP07196 543 aa8.41□□□□□ -1.06
ERCC6-213ENST00000624341 EIF4G1Q04637 1599 aaKnown RBP8.4□□□□□ -1.07
ERCC6-213ENST00000624341 CECR2Q9BXF3 1484 aa8.39□□□□□ -1.07
ERCC6-213ENST00000624341 ATP1B4Q9UN42 357 aaPredicted RBP8.39□□□□□ -1.07
ERCC6-213ENST00000624341 CHIC1Q5VXU3 224 aa8.37□□□□□ -1.07
ERCC6-213ENST00000624341 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.26□□□□□ -1.09
ERCC6-213ENST00000624341 HNRNPUL2Q1KMD3 747 aaKnown RBP8.26□□□□□ -1.09
ERCC6-213ENST00000624341 ITGAEP38570 1179 aa8.24□□□□□ -1.09
ERCC6-213ENST00000624341 DIEXFQ68CQ4 756 aaKnown RBP8.24□□□□□ -1.09
ERCC6-213ENST00000624341 GTF3C3Q9Y5Q9 886 aa8.18□□□□□ -1.1
ERCC6-213ENST00000624341 SMARCA2P51531 1590 aa8.16□□□□□ -1.1
ERCC6-213ENST00000624341 CNGB1Q14028 1251 aaPredicted RBP8.16□□□□□ -1.1
ERCC6-213ENST00000624341 POLR3GLQ9BT43 218 aa8.15□□□□□ -1.1
ERCC6-213ENST00000624341 NCAPD3P42695 1498 aa8.15□□□□□ -1.11
ERCC6-213ENST00000624341 HMGXB3Q12766 1538 aa8.13□□□□□ -1.11
ERCC6-213ENST00000624341 CUX2O14529 1486 aa8.13□□□□□ -1.11
ERCC6-213ENST00000624341 DAXXQ9UER7 740 aaPredicted RBP8.12□□□□□ -1.11
ERCC6-213ENST00000624341 SMARCA4P51532 1647 aa8.12□□□□□ -1.11
ERCC6-213ENST00000624341 BCANQ96GW7 911 aa8.1□□□□□ -1.11
ERCC6-213ENST00000624341 BAZ1AQ9NRL2 1556 aaPredicted RBP8.1□□□□□ -1.11
ERCC6-213ENST00000624341 ATAD2BQ9ULI0 1458 aa8.09□□□□□ -1.11
ERCC6-213ENST00000624341 ERCC6Q03468 1493 aa8.09□□□□□ -1.11
ERCC6-213ENST00000624341 PEG3Q9GZU2 1588 aa8.06□□□□□ -1.12
ERCC6-213ENST00000624341 ACIN1Q9UKV3 1341 aaKnown RBP8.06□□□□□ -1.12
ERCC6-213ENST00000624341 BAZ1BQ9UIG0 1483 aaKnown RBP8.05□□□□□ -1.12
ERCC6-213ENST00000624341 RTL5Q5HYW3 569 aaPredicted RBP8.04□□□□□ -1.12
ERCC6-213ENST00000624341 LAMC3Q9Y6N6 1575 aa8.02□□□□□ -1.13
ERCC6-213ENST00000624341 ZNF316A6NFI3 1004 aaPredicted RBP8.01□□□□□ -1.13
ERCC6-213ENST00000624341 DNAJC5Q9H3Z4 198 aa8□□□□□ -1.13
ERCC6-213ENST00000624341 NEUROD1Q13562 356 aa7.99□□□□□ -1.13
ERCC6-213ENST00000624341 FAM50AQ14320 339 aaKnown RBP7.97□□□□□ -1.13
ERCC6-213ENST00000624341 PDS5BQ9NTI5 1447 aa7.96□□□□□ -1.13
ERCC6-213ENST00000624341 CLSPNQ9HAW4 1339 aa7.95□□□□□ -1.14
ERCC6-213ENST00000624341 THOC2Q8NI27 1593 aaKnown RBP7.94□□□□□ -1.14
ERCC6-213ENST00000624341 CDK11AQ9UQ88 783 aaPredicted RBP7.94□□□□□ -1.14
ERCC6-213ENST00000624341 MROH2BQ7Z745 1585 aa7.93□□□□□ -1.14
ERCC6-213ENST00000624341 ANP32CO43423 234 aa7.93□□□□□ -1.14
ERCC6-213ENST00000624341 MYT1LQ9UL68 1186 aa7.92□□□□□ -1.14
ERCC6-213ENST00000624341 NESP48681 1621 aa7.91□□□□□ -1.14
ERCC6-213ENST00000624341 TRIM52Q96A61 297 aa7.91□□□□□ -1.14
ERCC6-213ENST00000624341 KIF21AQ7Z4S6 1674 aa7.91□□□□□ -1.14
ERCC6-213ENST00000624341 SCAF1Q9H7N4 1312 aaKnown RBP7.9□□□□□ -1.14
ERCC6-213ENST00000624341 MRC2Q9UBG0 1479 aa7.89□□□□□ -1.15
ERCC6-213ENST00000624341 CADPSQ9ULU8 1353 aa7.88□□□□□ -1.15
ERCC6-213ENST00000624341 SLC4A1APQ9BWU0 796 aaKnown RBP7.88□□□□□ -1.15
ERCC6-213ENST00000624341 WIZO95785 1651 aa7.86□□□□□ -1.15
ERCC6-213ENST00000624341 WDR62O43379 1518 aa7.86□□□□□ -1.15
ERCC6-213ENST00000624341 ZNF326Q5BKZ1 582 aaKnown RBP7.86□□□□□ -1.15
ERCC6-213ENST00000624341 FKBP8Q14318 412 aa7.85□□□□□ -1.15
ERCC6-213ENST00000624341 RSF1Q96T23 1441 aaPredicted RBP7.85□□□□□ -1.15
ERCC6-213ENST00000624341 CEP164Q9UPV0 1460 aa7.85□□□□□ -1.15
ERCC6-213ENST00000624341 TOP2AP11388 1531 aaKnown RBP7.84□□□□□ -1.15
ERCC6-213ENST00000624341 PRDM2Q13029 1718 aa7.83□□□□□ -1.16
ERCC6-213ENST00000624341 CSRNP3Q8WYN3 585 aa7.81□□□□□ -1.16
ERCC6-213ENST00000624341 FANCD2Q9BXW9 1451 aa7.8□□□□□ -1.16
ERCC6-213ENST00000624341 NPM2Q86SE8 214 aaKnown RBP7.79□□□□□ -1.16
ERCC6-213ENST00000624341 ANP32AP39687 249 aaKnown RBP7.79□□□□□ -1.16
ERCC6-213ENST00000624341 CFTRP13569 1480 aa7.79□□□□□ -1.16
ERCC6-213ENST00000624341 DDX10Q13206 875 aaKnown RBP7.78□□□□□ -1.16
ERCC6-213ENST00000624341 MIER1Q8N108 512 aa7.78□□□□□ -1.16
ERCC6-213ENST00000624341 P3H3Q8IVL6 736 aa7.77□□□□□ -1.17
ERCC6-213ENST00000624341 EIF5BO60841 1220 aaKnown RBP7.76□□□□□ -1.17
ERCC6-213ENST00000624341 HNRNPUQ00839 825 aaKnown RBP eCLIP7.76□□□□□ -1.17
ERCC6-213ENST00000624341 ABCC8Q09428 1581 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms