RNA–Protein interactions for RNA: ENST00000620992.4

PTPDC1-204, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPDC1, Length 4,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-204ENST00000620992 BIVM-ERCC5R4GMW8 1640 aa11.7□□□□□ -0.54
PTPDC1-204ENST00000620992 NCAPD3P42695 1498 aa11.69□□□□□ -0.54
PTPDC1-204ENST00000620992 CUX2O14529 1486 aa11.68□□□□□ -0.54
PTPDC1-204ENST00000620992 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
PTPDC1-204ENST00000620992 CHGAP10645 457 aaKnown RBP11.66□□□□□ -0.54
PTPDC1-204ENST00000620992 ARHGAP35Q9NRY4 1499 aa11.66□□□□□ -0.54
PTPDC1-204ENST00000620992 CFTRP13569 1480 aa11.64□□□□□ -0.55
PTPDC1-204ENST00000620992 HMGXB3Q12766 1538 aa11.64□□□□□ -0.55
PTPDC1-204ENST00000620992 RRBP1Q9P2E9 1410 aaKnown RBP11.64□□□□□ -0.55
PTPDC1-204ENST00000620992 CARMIL1Q5VZK9 1371 aa11.63□□□□□ -0.55
PTPDC1-204ENST00000620992 RAB3GAP2Q9H2M9 1393 aa11.63□□□□□ -0.55
PTPDC1-204ENST00000620992 IGF1RP08069 1367 aa11.62□□□□□ -0.55
PTPDC1-204ENST00000620992 SIN3AQ96ST3 1273 aa11.6□□□□□ -0.55
PTPDC1-204ENST00000620992 CHIC2Q9UKJ5 165 aa11.59□□□□□ -0.55
PTPDC1-204ENST00000620992 DDX10Q13206 875 aaKnown RBP11.58□□□□□ -0.56
PTPDC1-204ENST00000620992 HIRIP3Q9BW71 556 aaPredicted RBP11.58□□□□□ -0.56
PTPDC1-204ENST00000620992 DAXXQ9UER7 740 aaPredicted RBP11.58□□□□□ -0.56
PTPDC1-204ENST00000620992 MYT1Q01538 1121 aa11.58□□□□□ -0.56
PTPDC1-204ENST00000620992 CADPSQ9ULU8 1353 aa11.57□□□□□ -0.56
PTPDC1-204ENST00000620992 KCNH8Q96L42 1107 aa11.57□□□□□ -0.56
PTPDC1-204ENST00000620992 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.56□□□□□ -0.56
PTPDC1-204ENST00000620992 ESF1Q9H501 851 aaKnown RBP11.56□□□□□ -0.56
PTPDC1-204ENST00000620992 SUPT16HQ9Y5B9 1047 aaKnown RBP11.56□□□□□ -0.56
PTPDC1-204ENST00000620992 FGD5Q6ZNL6 1462 aa11.56□□□□□ -0.56
PTPDC1-204ENST00000620992 SETD5Q9C0A6 1442 aa11.55□□□□□ -0.56
PTPDC1-204ENST00000620992 PHLDB1Q86UU1 1377 aa11.54□□□□□ -0.56
PTPDC1-204ENST00000620992 STAG3Q9UJ98 1225 aa11.53□□□□□ -0.56
PTPDC1-204ENST00000620992 NPM1P06748 294 aaKnown RBP eCLIP11.52□□□□□ -0.57
PTPDC1-204ENST00000620992 FHAD1B1AJZ9 1412 aa11.52□□□□□ -0.57
PTPDC1-204ENST00000620992 FHOD3Q2V2M9 1422 aa11.52□□□□□ -0.57
PTPDC1-204ENST00000620992 LRRC9Q6ZRR7 1453 aa11.51□□□□□ -0.57
PTPDC1-204ENST00000620992 TIAM1Q13009 1591 aa11.51□□□□□ -0.57
PTPDC1-204ENST00000620992 SALL2Q9Y467 1007 aaPredicted RBP11.51□□□□□ -0.57
PTPDC1-204ENST00000620992 RAD54L2Q9Y4B4 1467 aa11.48□□□□□ -0.57
PTPDC1-204ENST00000620992 SENP3-EIF4A1A0A087X0R7 540 aa11.47□□□□□ -0.57
PTPDC1-204ENST00000620992 FANCD2Q9BXW9 1451 aa11.47□□□□□ -0.57
PTPDC1-204ENST00000620992 MAPKBP1O60336 1514 aa11.46□□□□□ -0.57
PTPDC1-204ENST00000620992 CHMP7Q8WUX9 453 aaPredicted RBP11.45□□□□□ -0.58
PTPDC1-204ENST00000620992 MTUS2Q5JR59 1369 aa11.45□□□□□ -0.58
PTPDC1-204ENST00000620992 ANP32CO43423 234 aa11.45□□□□□ -0.58
PTPDC1-204ENST00000620992 A0A0G2JS52 829 aa11.45□□□□□ -0.58
PTPDC1-204ENST00000620992 TONSLQ96HA7 1378 aa11.44□□□□□ -0.58
PTPDC1-204ENST00000620992 FKBP8Q14318 412 aa11.44□□□□□ -0.58
PTPDC1-204ENST00000620992 KDM2AQ9Y2K7 1162 aa11.44□□□□□ -0.58
PTPDC1-204ENST00000620992 WDR97A6NE52 1622 aa11.43□□□□□ -0.58
PTPDC1-204ENST00000620992 PCF11O94913 1555 aaKnown RBP11.43□□□□□ -0.58
PTPDC1-204ENST00000620992 CDK11AQ9UQ88 783 aaPredicted RBP11.42□□□□□ -0.58
PTPDC1-204ENST00000620992 MAP3K1Q13233 1512 aa11.42□□□□□ -0.58
PTPDC1-204ENST00000620992 PPP1R15AO75807 674 aaPredicted RBP11.42□□□□□ -0.58
PTPDC1-204ENST00000620992 TDRD9Q8NDG6 1382 aaKnown RBP11.4□□□□□ -0.58
PTPDC1-204ENST00000620992 NESP48681 1621 aa11.4□□□□□ -0.59
PTPDC1-204ENST00000620992 CC2D2AQ9P2K1 1620 aa11.39□□□□□ -0.59
PTPDC1-204ENST00000620992 PRDM2Q13029 1718 aa11.38□□□□□ -0.59
PTPDC1-204ENST00000620992 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
PTPDC1-204ENST00000620992 TIMELESSQ9UNS1 1208 aa11.38□□□□□ -0.59
PTPDC1-204ENST00000620992 RRP7BPQ9NSQ0 103 aa11.38□□□□□ -0.59
PTPDC1-204ENST00000620992 TSHZ2Q9NRE2 1034 aa11.37□□□□□ -0.59
PTPDC1-204ENST00000620992 CASKIN1Q8WXD9 1431 aa11.37□□□□□ -0.59
PTPDC1-204ENST00000620992 FMN1Q68DA7 1419 aa11.37□□□□□ -0.59
PTPDC1-204ENST00000620992 TOPBP1Q92547 1522 aa11.36□□□□□ -0.59
PTPDC1-204ENST00000620992 FYCO1Q9BQS8 1478 aa11.36□□□□□ -0.59
PTPDC1-204ENST00000620992 CANXP27824 592 aaKnown RBP11.36□□□□□ -0.59
PTPDC1-204ENST00000620992 FGD6Q6ZV73 1430 aa11.35□□□□□ -0.59
PTPDC1-204ENST00000620992 ERCC6Q03468 1493 aa11.35□□□□□ -0.59
PTPDC1-204ENST00000620992 ZBTB7CA1YPR0 619 aa11.34□□□□□ -0.59
PTPDC1-204ENST00000620992 ABCA10Q8WWZ4 1543 aa11.34□□□□□ -0.59
PTPDC1-204ENST00000620992 CCDC18Q5T9S5 1454 aa11.34□□□□□ -0.59
PTPDC1-204ENST00000620992 DNMBPQ6XZF7 1577 aa11.34□□□□□ -0.59
PTPDC1-204ENST00000620992 CFAP43Q8NDM7 1665 aa11.33□□□□□ -0.6
PTPDC1-204ENST00000620992 RGL3Q3MIN7 710 aa11.32□□□□□ -0.6
PTPDC1-204ENST00000620992 EFCAB5A4FU69 1503 aa11.32□□□□□ -0.6
PTPDC1-204ENST00000620992 NEFMP07197 916 aa11.31□□□□□ -0.6
PTPDC1-204ENST00000620992 CCER2I3L3R5 266 aa11.31□□□□□ -0.6
PTPDC1-204ENST00000620992 ZBTB47Q9UFB7 747 aaPredicted RBP11.31□□□□□ -0.6
PTPDC1-204ENST00000620992 FAM9BQ8IZU0 186 aa11.3□□□□□ -0.6
PTPDC1-204ENST00000620992 ARID4BQ4LE39 1312 aaPredicted RBP11.3□□□□□ -0.6
PTPDC1-204ENST00000620992 HNRNPUQ00839 825 aaKnown RBP eCLIP11.3□□□□□ -0.6
PTPDC1-204ENST00000620992 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
PTPDC1-204ENST00000620992 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
PTPDC1-204ENST00000620992 TRHP20396 242 aaPredicted RBP11.29□□□□□ -0.6
PTPDC1-204ENST00000620992 C14orf37Q86TY3 774 aa11.29□□□□□ -0.6
PTPDC1-204ENST00000620992 PTPRKQ15262 1439 aa11.29□□□□□ -0.6
PTPDC1-204ENST00000620992 NCOA2Q15596 1464 aa11.28□□□□□ -0.6
PTPDC1-204ENST00000620992 UACAQ9BZF9 1416 aa11.28□□□□□ -0.6
PTPDC1-204ENST00000620992 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.28□□□□□ -0.6
PTPDC1-204ENST00000620992 AQRO60306 1485 aaKnown RBP eCLIP11.28□□□□□ -0.6
PTPDC1-204ENST00000620992 IRX6P78412 446 aaPredicted RBP11.27□□□□□ -0.6
PTPDC1-204ENST00000620992 FOXD1Q16676 465 aa11.27□□□□□ -0.6
PTPDC1-204ENST00000620992 GAPVD1Q14C86 1478 aa11.27□□□□□ -0.61
PTPDC1-204ENST00000620992 HFM1A2PYH4 1435 aa11.27□□□□□ -0.61
PTPDC1-204ENST00000620992 MYOM3Q5VTT5 1437 aa11.27□□□□□ -0.61
PTPDC1-204ENST00000620992 CUL7Q14999 1698 aa11.26□□□□□ -0.61
PTPDC1-204ENST00000620992 DNAJC5BQ9UF47 199 aa11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 PDS5BQ9NTI5 1447 aa11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 NAIPQ13075 1403 aa11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 URB2Q14146 1524 aaKnown RBP11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 HSPA5P11021 654 aaKnown RBP11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 SNAPC4Q5SXM2 1469 aa11.25□□□□□ -0.61
PTPDC1-204ENST00000620992 CTTNBP2Q8WZ74 1663 aa11.24□□□□□ -0.61
PTPDC1-204ENST00000620992 MLECQ14165 292 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms