RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ABCA5Q8WWZ7 1642 aa15.81■□□□□ 0.12
UPF3A-212ENST00000619079 FBLN2P98095 1184 aa15.8■□□□□ 0.12
UPF3A-212ENST00000619079 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
UPF3A-212ENST00000619079 EEA1Q15075 1411 aa15.77■□□□□ 0.12
UPF3A-212ENST00000619079 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.12
UPF3A-212ENST00000619079 TSHZ2Q9NRE2 1034 aa15.76■□□□□ 0.11
UPF3A-212ENST00000619079 PBRM1Q86U86 1689 aa15.75■□□□□ 0.11
UPF3A-212ENST00000619079 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
UPF3A-212ENST00000619079 ERICH3Q5RHP9 1530 aa15.74■□□□□ 0.11
UPF3A-212ENST00000619079 MAGI1Q96QZ7 1491 aaPredicted RBP15.73■□□□□ 0.11
UPF3A-212ENST00000619079 IGF1RP08069 1367 aa15.73■□□□□ 0.11
UPF3A-212ENST00000619079 FHAD1B1AJZ9 1412 aa15.68■□□□□ 0.1
UPF3A-212ENST00000619079 CSRNP3Q8WYN3 585 aa15.68■□□□□ 0.1
UPF3A-212ENST00000619079 SYNJ2O15056 1496 aa15.68■□□□□ 0.1
UPF3A-212ENST00000619079 CARMIL1Q5VZK9 1371 aa15.67■□□□□ 0.1
UPF3A-212ENST00000619079 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
UPF3A-212ENST00000619079 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
UPF3A-212ENST00000619079 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
UPF3A-212ENST00000619079 CUL7Q14999 1698 aa15.64■□□□□ 0.09
UPF3A-212ENST00000619079 HNRNPUL2Q1KMD3 747 aaKnown RBP15.62■□□□□ 0.09
UPF3A-212ENST00000619079 GRIN2AQ12879 1464 aa15.61■□□□□ 0.09
UPF3A-212ENST00000619079 CHD1O14646 1710 aa15.61■□□□□ 0.09
UPF3A-212ENST00000619079 UBTFP17480 764 aaKnown RBP15.6■□□□□ 0.09
UPF3A-212ENST00000619079 RAPGEF2Q9Y4G8 1499 aa15.59■□□□□ 0.09
UPF3A-212ENST00000619079 PRXQ9BXM0 1461 aa15.56■□□□□ 0.08
UPF3A-212ENST00000619079 VPS8Q8N3P4 1428 aa15.51■□□□□ 0.07
UPF3A-212ENST00000619079 NUP160Q12769 1436 aa15.51■□□□□ 0.07
UPF3A-212ENST00000619079 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
UPF3A-212ENST00000619079 APLP2Q06481 763 aa15.48■□□□□ 0.07
UPF3A-212ENST00000619079 KIF21BO75037 1637 aa15.48■□□□□ 0.07
UPF3A-212ENST00000619079 CLIP1P30622 1438 aa15.47■□□□□ 0.07
UPF3A-212ENST00000619079 DHX57Q6P158 1386 aaKnown RBP15.46■□□□□ 0.07
UPF3A-212ENST00000619079 RANGAP1P46060 587 aaPredicted RBP15.45■□□□□ 0.06
UPF3A-212ENST00000619079 KIAA0586Q9BVV6 1533 aa15.44■□□□□ 0.06
UPF3A-212ENST00000619079 CLASP1Q7Z460 1538 aa15.44■□□□□ 0.06
UPF3A-212ENST00000619079 JPH4Q96JJ6 628 aa15.43■□□□□ 0.06
UPF3A-212ENST00000619079 DNAJC5Q9H3Z4 198 aa15.42■□□□□ 0.06
UPF3A-212ENST00000619079 RBM19Q9Y4C8 960 aaKnown RBP15.4■□□□□ 0.06
UPF3A-212ENST00000619079 IQGAP2Q13576 1575 aa15.39■□□□□ 0.06
UPF3A-212ENST00000619079 NEFLP07196 543 aa15.39■□□□□ 0.05
UPF3A-212ENST00000619079 FKBP8Q14318 412 aa15.37■□□□□ 0.05
UPF3A-212ENST00000619079 CTTNBP2Q8WZ74 1663 aa15.36■□□□□ 0.05
UPF3A-212ENST00000619079 PRG4Q92954 1404 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-212ENST00000619079 BCANQ96GW7 911 aa15.34■□□□□ 0.05
UPF3A-212ENST00000619079 ARHGEF11O15085 1522 aa15.33■□□□□ 0.05
UPF3A-212ENST00000619079 MYT1LQ9UL68 1186 aa15.33■□□□□ 0.04
UPF3A-212ENST00000619079 CARMIL2Q6F5E8 1435 aa15.32■□□□□ 0.04
UPF3A-212ENST00000619079 P3H3Q8IVL6 736 aa15.31■□□□□ 0.04
UPF3A-212ENST00000619079 SHROOM2Q13796 1616 aa15.31■□□□□ 0.04
UPF3A-212ENST00000619079 UGGT2Q9NYU1 1516 aa15.29■□□□□ 0.04
UPF3A-212ENST00000619079 ERCC6L2Q5T890 1561 aa15.29■□□□□ 0.04
UPF3A-212ENST00000619079 RIMBP3CA6NJZ7 1639 aa15.28■□□□□ 0.04
UPF3A-212ENST00000619079 RIMBP3BA6NNM3 1639 aa15.28■□□□□ 0.04
UPF3A-212ENST00000619079 RIMBP3Q9UFD9 1639 aa15.28■□□□□ 0.04
UPF3A-212ENST00000619079 FANCIQ9NVI1 1328 aa15.27■□□□□ 0.04
UPF3A-212ENST00000619079 CYB5RLQ6IPT4 315 aa15.27■□□□□ 0.04
UPF3A-212ENST00000619079 DISP1Q96F81 1524 aa15.25■□□□□ 0.03
UPF3A-212ENST00000619079 RRBP1Q9P2E9 1410 aaKnown RBP15.25■□□□□ 0.03
UPF3A-212ENST00000619079 KIAA0556O60303 1618 aa15.23■□□□□ 0.03
UPF3A-212ENST00000619079 KCNH8Q96L42 1107 aa15.23■□□□□ 0.03
UPF3A-212ENST00000619079 ERICH6Q7L0X2 663 aa15.22■□□□□ 0.03
UPF3A-212ENST00000619079 ARAP1Q96P48 1450 aa15.22■□□□□ 0.03
UPF3A-212ENST00000619079 PTPRGP23470 1445 aa15.22■□□□□ 0.03
UPF3A-212ENST00000619079 CCER2I3L3R5 266 aa15.21■□□□□ 0.02
UPF3A-212ENST00000619079 FHOD3Q2V2M9 1422 aa15.2■□□□□ 0.02
UPF3A-212ENST00000619079 EFCAB5A4FU69 1503 aa15.2■□□□□ 0.02
UPF3A-212ENST00000619079 MSH5O43196 834 aa15.19■□□□□ 0.02
UPF3A-212ENST00000619079 SAMD9Q5K651 1589 aa15.18■□□□□ 0.02
UPF3A-212ENST00000619079 ARHGAP35Q9NRY4 1499 aa15.18■□□□□ 0.02
UPF3A-212ENST00000619079 PRKCSHP14314 528 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-212ENST00000619079 CDK11AQ9UQ88 783 aaPredicted RBP15.14■□□□□ 0.01
UPF3A-212ENST00000619079 CCNB3Q8WWL7 1395 aa15.13■□□□□ 0.01
UPF3A-212ENST00000619079 ATP1B4Q9UN42 357 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-212ENST00000619079 ITGAEP38570 1179 aa15.11■□□□□ 0.01
UPF3A-212ENST00000619079 DDX10Q13206 875 aaKnown RBP15.11■□□□□ 0.01
UPF3A-212ENST00000619079 MAPKBP1O60336 1514 aa15.11■□□□□ 0.01
UPF3A-212ENST00000619079 PLB1Q6P1J6 1458 aa15.11■□□□□ 0.01
UPF3A-212ENST00000619079 PPP1R15AO75807 674 aaPredicted RBP15.11■□□□□ 0.01
UPF3A-212ENST00000619079 TIMELESSQ9UNS1 1208 aa15.11■□□□□ 0.01
UPF3A-212ENST00000619079 FMN1Q68DA7 1419 aa15.1■□□□□ 0.01
UPF3A-212ENST00000619079 UACAQ9BZF9 1416 aa15.1■□□□□ 0.01
UPF3A-212ENST00000619079 ARID3CA6NKF2 412 aa15.1■□□□□ 0.01
UPF3A-212ENST00000619079 ANP32CO43423 234 aa15.1■□□□□ 0.01
UPF3A-212ENST00000619079 NPM1P06748 294 aaKnown RBP eCLIP15.09■□□□□ 0.01
UPF3A-212ENST00000619079 ERICH6BQ5W0A0 696 aa15.08■□□□□ 0
UPF3A-212ENST00000619079 KANK4Q5T7N3 995 aaPredicted RBP15.07■□□□□ 0
UPF3A-212ENST00000619079 TRIM52Q96A61 297 aa15.06■□□□□ 0
UPF3A-212ENST00000619079 RAB3GAP2Q9H2M9 1393 aa15.06■□□□□ 0
UPF3A-212ENST00000619079 ABCC2Q92887 1545 aa15.04■□□□□ -0
UPF3A-212ENST00000619079 ADCY10Q96PN6 1610 aa15.04■□□□□ -0
UPF3A-212ENST00000619079 ABCA8O94911 1581 aa15.02■□□□□ -0
UPF3A-212ENST00000619079 RAPGEF6Q8TEU7 1601 aa15.02■□□□□ -0
UPF3A-212ENST00000619079 DEKP35659 375 aaKnown RBP15.02■□□□□ -0
UPF3A-212ENST00000619079 UHRF1BP1LA0JNW5 1464 aa15.02□□□□□ -0.01
UPF3A-212ENST00000619079 SETD5Q9C0A6 1442 aa15□□□□□ -0.01
UPF3A-212ENST00000619079 NUP153P49790 1475 aaKnown RBP14.98□□□□□ -0.01
UPF3A-212ENST00000619079 CASKIN1Q8WXD9 1431 aa14.98□□□□□ -0.01
UPF3A-212ENST00000619079 PCF11O94913 1555 aaKnown RBP14.98□□□□□ -0.01
UPF3A-212ENST00000619079 HECW1Q76N89 1606 aa14.97□□□□□ -0.01
UPF3A-212ENST00000619079 KDM5BQ9UGL1 1544 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms