RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
MMP28-206ENST00000616383 ERICH3Q5RHP9 1530 aa18.05■□□□□ 0.48
MMP28-206ENST00000616383 CUL7Q14999 1698 aa18.05■□□□□ 0.48
MMP28-206ENST00000616383 KIF21BO75037 1637 aa18.04■□□□□ 0.48
MMP28-206ENST00000616383 CSRNP3Q8WYN3 585 aa18.03■□□□□ 0.48
MMP28-206ENST00000616383 GRIN2BQ13224 1484 aa18.01■□□□□ 0.47
MMP28-206ENST00000616383 IGF1RP08069 1367 aa18■□□□□ 0.47
MMP28-206ENST00000616383 ADAMTS12P58397 1594 aa17.99■□□□□ 0.47
MMP28-206ENST00000616383 PRXQ9BXM0 1461 aa17.97■□□□□ 0.47
MMP28-206ENST00000616383 GOLGA3Q08378 1498 aa17.94■□□□□ 0.46
MMP28-206ENST00000616383 SNAPC4Q5SXM2 1469 aa17.94■□□□□ 0.46
MMP28-206ENST00000616383 RAPGEF2Q9Y4G8 1499 aa17.93■□□□□ 0.46
MMP28-206ENST00000616383 MAGI1Q96QZ7 1491 aaPredicted RBP17.92■□□□□ 0.46
MMP28-206ENST00000616383 CARMIL1Q5VZK9 1371 aa17.91■□□□□ 0.46
MMP28-206ENST00000616383 EHMT2Q96KQ7 1210 aa17.89■□□□□ 0.45
MMP28-206ENST00000616383 FHAD1B1AJZ9 1412 aa17.89■□□□□ 0.45
MMP28-206ENST00000616383 LOC105371045A0A1W2PR82 267 aa17.88■□□□□ 0.45
MMP28-206ENST00000616383 CHD1O14646 1710 aa17.86■□□□□ 0.45
MMP28-206ENST00000616383 CTTNBP2Q8WZ74 1663 aa17.85■□□□□ 0.45
MMP28-206ENST00000616383 SYNJ2O15056 1496 aa17.83■□□□□ 0.45
MMP28-206ENST00000616383 GRIN2AQ12879 1464 aa17.81■□□□□ 0.44
MMP28-206ENST00000616383 U3KPZ7 1027 aaPredicted RBP17.8■□□□□ 0.44
MMP28-206ENST00000616383 CAPN15O75808 1086 aa17.79■□□□□ 0.44
MMP28-206ENST00000616383 UBTFP17480 764 aaKnown RBP17.77■□□□□ 0.44
MMP28-206ENST00000616383 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
MMP28-206ENST00000616383 CEP170Q5SW79 1584 aa17.74■□□□□ 0.43
MMP28-206ENST00000616383 CHMP7Q8WUX9 453 aaPredicted RBP17.72■□□□□ 0.43
MMP28-206ENST00000616383 FBLN2P98095 1184 aa17.7■□□□□ 0.42
MMP28-206ENST00000616383 NUP160Q12769 1436 aa17.68■□□□□ 0.42
MMP28-206ENST00000616383 IQGAP2Q13576 1575 aa17.68■□□□□ 0.42
MMP28-206ENST00000616383 SPINK5Q9NQ38 1064 aaPredicted RBP17.68■□□□□ 0.42
MMP28-206ENST00000616383 CEP162Q5TB80 1403 aa17.67■□□□□ 0.42
MMP28-206ENST00000616383 KIAA0586Q9BVV6 1533 aa17.63■□□□□ 0.41
MMP28-206ENST00000616383 KCNA4P22459 653 aa17.62■□□□□ 0.41
MMP28-206ENST00000616383 CLIP1P30622 1438 aa17.61■□□□□ 0.41
MMP28-206ENST00000616383 CLASP1Q7Z460 1538 aa17.59■□□□□ 0.41
MMP28-206ENST00000616383 DSG3P32926 999 aa17.59■□□□□ 0.41
MMP28-206ENST00000616383 SAMD9Q5K651 1589 aa17.58■□□□□ 0.41
MMP28-206ENST00000616383 EFCAB5A4FU69 1503 aa17.58■□□□□ 0.41
MMP28-206ENST00000616383 RANGAP1P46060 587 aaPredicted RBP17.57■□□□□ 0.4
MMP28-206ENST00000616383 UGGT2Q9NYU1 1516 aa17.57■□□□□ 0.4
MMP28-206ENST00000616383 SHROOM2Q13796 1616 aa17.55■□□□□ 0.4
MMP28-206ENST00000616383 ARHGAP35Q9NRY4 1499 aa17.55■□□□□ 0.4
MMP28-206ENST00000616383 ARAP1Q96P48 1450 aa17.51■□□□□ 0.39
MMP28-206ENST00000616383 KIAA0556O60303 1618 aa17.51■□□□□ 0.39
MMP28-206ENST00000616383 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
MMP28-206ENST00000616383 DISP1Q96F81 1524 aa17.48■□□□□ 0.39
MMP28-206ENST00000616383 FHOD3Q2V2M9 1422 aa17.45■□□□□ 0.38
MMP28-206ENST00000616383 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
MMP28-206ENST00000616383 APLP2Q06481 763 aa17.43■□□□□ 0.38
MMP28-206ENST00000616383 JPH4Q96JJ6 628 aa17.43■□□□□ 0.38
MMP28-206ENST00000616383 PRG4Q92954 1404 aaPredicted RBP17.42■□□□□ 0.38
MMP28-206ENST00000616383 P3H3Q8IVL6 736 aa17.42■□□□□ 0.38
MMP28-206ENST00000616383 ERCC6L2Q5T890 1561 aa17.41■□□□□ 0.38
MMP28-206ENST00000616383 CARMIL2Q6F5E8 1435 aa17.41■□□□□ 0.38
MMP28-206ENST00000616383 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
MMP28-206ENST00000616383 SLC4A2P04920 1241 aa17.41■□□□□ 0.38
MMP28-206ENST00000616383 PCF11O94913 1555 aaKnown RBP17.39■□□□□ 0.37
MMP28-206ENST00000616383 FMN1Q68DA7 1419 aa17.35■□□□□ 0.37
MMP28-206ENST00000616383 POTEHQ6S545 545 aa17.34■□□□□ 0.37
MMP28-206ENST00000616383 ABCB7O75027 752 aa17.32■□□□□ 0.36
MMP28-206ENST00000616383 ZNF219Q9P2Y4 722 aaPredicted RBP17.32■□□□□ 0.36
MMP28-206ENST00000616383 LRRIQ1Q96JM4 1722 aa17.32■□□□□ 0.36
MMP28-206ENST00000616383 FYCO1Q9BQS8 1478 aa17.31■□□□□ 0.36
MMP28-206ENST00000616383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.31■□□□□ 0.36
MMP28-206ENST00000616383 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
MMP28-206ENST00000616383 RAPGEF6Q8TEU7 1601 aa17.31■□□□□ 0.36
MMP28-206ENST00000616383 HECW1Q76N89 1606 aa17.29■□□□□ 0.36
MMP28-206ENST00000616383 CFAP43Q8NDM7 1665 aa17.29■□□□□ 0.36
MMP28-206ENST00000616383 CASKIN1Q8WXD9 1431 aa17.29■□□□□ 0.36
MMP28-206ENST00000616383 TTBK1Q5TCY1 1321 aaPredicted RBP17.27■□□□□ 0.36
MMP28-206ENST00000616383 ABCA8O94911 1581 aa17.27■□□□□ 0.35
MMP28-206ENST00000616383 ARHGEF11O15085 1522 aa17.26■□□□□ 0.35
MMP28-206ENST00000616383 PTPRGP23470 1445 aa17.25■□□□□ 0.35
MMP28-206ENST00000616383 RIMBP3CA6NJZ7 1639 aa17.24■□□□□ 0.35
MMP28-206ENST00000616383 RIMBP3BA6NNM3 1639 aa17.24■□□□□ 0.35
MMP28-206ENST00000616383 RIMBP3Q9UFD9 1639 aa17.24■□□□□ 0.35
MMP28-206ENST00000616383 PLB1Q6P1J6 1458 aa17.24■□□□□ 0.35
MMP28-206ENST00000616383 TIAM1Q13009 1591 aa17.23■□□□□ 0.35
MMP28-206ENST00000616383 NUP153P49790 1475 aaKnown RBP17.2■□□□□ 0.34
MMP28-206ENST00000616383 ABCC2Q92887 1545 aa17.19■□□□□ 0.34
MMP28-206ENST00000616383 CCDC18Q5T9S5 1454 aa17.18■□□□□ 0.34
MMP28-206ENST00000616383 MAP3K1Q13233 1512 aa17.18■□□□□ 0.34
MMP28-206ENST00000616383 SAMD1Q6SPF0 538 aaPredicted RBP17.18■□□□□ 0.34
MMP28-206ENST00000616383 ATP1B4Q9UN42 357 aaPredicted RBP17.18■□□□□ 0.34
MMP28-206ENST00000616383 EPRSP07814 1512 aaKnown RBP17.17■□□□□ 0.34
MMP28-206ENST00000616383 CDK13Q14004 1512 aaKnown RBP17.17■□□□□ 0.34
MMP28-206ENST00000616383 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
MMP28-206ENST00000616383 UACAQ9BZF9 1416 aa17.17■□□□□ 0.34
MMP28-206ENST00000616383 ADCY10Q96PN6 1610 aa17.15■□□□□ 0.34
MMP28-206ENST00000616383 UHRF1BP1LA0JNW5 1464 aa17.13■□□□□ 0.33
MMP28-206ENST00000616383 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
MMP28-206ENST00000616383 ARID3CA6NKF2 412 aa17.09■□□□□ 0.33
MMP28-206ENST00000616383 LRRC9Q6ZRR7 1453 aa17.09■□□□□ 0.33
MMP28-206ENST00000616383 EHBP1L1Q8N3D4 1523 aa17.09■□□□□ 0.33
MMP28-206ENST00000616383 MAGI3Q5TCQ9 1506 aa17.08■□□□□ 0.32
MMP28-206ENST00000616383 PPARGC1BQ86YN6 1023 aaKnown RBP17.08■□□□□ 0.32
MMP28-206ENST00000616383 ATP10BO94823 1461 aa17.07■□□□□ 0.32
MMP28-206ENST00000616383 KDM5BQ9UGL1 1544 aa17.06■□□□□ 0.32
MMP28-206ENST00000616383 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms