RNA–Protein interactions for RNA: ENST00000611950.1

PCDHGC3-202, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS ALT2 BASIC

Gene PCDHGC3, Length 2,849 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-202ENST00000611950 RTN4Q9NQC3 1192 aaKnown RBP16.12■□□□□ 0.17
PCDHGC3-202ENST00000611950 TRHP20396 242 aaPredicted RBP16.11■□□□□ 0.17
PCDHGC3-202ENST00000611950 TARBP1Q13395 1621 aaKnown RBP16.08■□□□□ 0.16
PCDHGC3-202ENST00000611950 KIF21BO75037 1637 aa16.06■□□□□ 0.16
PCDHGC3-202ENST00000611950 POLA1P09884 1462 aaPredicted RBP16.05■□□□□ 0.16
PCDHGC3-202ENST00000611950 HNRNPUL2Q1KMD3 747 aaKnown RBP16.04■□□□□ 0.16
PCDHGC3-202ENST00000611950 DIEXFQ68CQ4 756 aaKnown RBP16.04■□□□□ 0.16
PCDHGC3-202ENST00000611950 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
PCDHGC3-202ENST00000611950 RAD54L2Q9Y4B4 1467 aa16.03■□□□□ 0.16
PCDHGC3-202ENST00000611950 NEUROD1Q13562 356 aa16.02■□□□□ 0.15
PCDHGC3-202ENST00000611950 TDRD9Q8NDG6 1382 aaKnown RBP16.02■□□□□ 0.15
PCDHGC3-202ENST00000611950 TOP2BQ02880 1626 aa16■□□□□ 0.15
PCDHGC3-202ENST00000611950 RAPGEF2Q9Y4G8 1499 aa15.99■□□□□ 0.15
PCDHGC3-202ENST00000611950 CLIP1P30622 1438 aa15.96■□□□□ 0.15
PCDHGC3-202ENST00000611950 YTHDC1Q96MU7 727 aaKnown RBP15.95■□□□□ 0.14
PCDHGC3-202ENST00000611950 SNAPC4Q5SXM2 1469 aa15.95■□□□□ 0.14
PCDHGC3-202ENST00000611950 PLEKHG5O94827 1062 aa15.95■□□□□ 0.14
PCDHGC3-202ENST00000611950 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
PCDHGC3-202ENST00000611950 BIVM-ERCC5R4GMW8 1640 aa15.94■□□□□ 0.14
PCDHGC3-202ENST00000611950 FGD5Q6ZNL6 1462 aa15.93■□□□□ 0.14
PCDHGC3-202ENST00000611950 ACIN1Q9UKV3 1341 aaKnown RBP15.92■□□□□ 0.14
PCDHGC3-202ENST00000611950 PHF23Q9BUL5 403 aaPredicted RBP15.9■□□□□ 0.14
PCDHGC3-202ENST00000611950 VPS8Q8N3P4 1428 aa15.89■□□□□ 0.13
PCDHGC3-202ENST00000611950 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
PCDHGC3-202ENST00000611950 CUX1P39880 1505 aa15.88■□□□□ 0.13
PCDHGC3-202ENST00000611950 CLASP1Q7Z460 1538 aa15.87■□□□□ 0.13
PCDHGC3-202ENST00000611950 MAGI1Q96QZ7 1491 aaPredicted RBP15.86■□□□□ 0.13
PCDHGC3-202ENST00000611950 GRIN2BQ13224 1484 aa15.85■□□□□ 0.13
PCDHGC3-202ENST00000611950 WDR97A6NE52 1622 aa15.85■□□□□ 0.13
PCDHGC3-202ENST00000611950 PRXQ9BXM0 1461 aa15.83■□□□□ 0.12
PCDHGC3-202ENST00000611950 SYNJ2O15056 1496 aa15.82■□□□□ 0.12
PCDHGC3-202ENST00000611950 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
PCDHGC3-202ENST00000611950 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
PCDHGC3-202ENST00000611950 PBRM1Q86U86 1689 aa15.8■□□□□ 0.12
PCDHGC3-202ENST00000611950 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
PCDHGC3-202ENST00000611950 GAPVD1Q14C86 1478 aa15.79■□□□□ 0.12
PCDHGC3-202ENST00000611950 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.12
PCDHGC3-202ENST00000611950 KIF27Q86VH2 1401 aa15.75■□□□□ 0.11
PCDHGC3-202ENST00000611950 MIER1Q8N108 512 aa15.72■□□□□ 0.11
PCDHGC3-202ENST00000611950 ABCA5Q8WWZ7 1642 aa15.7■□□□□ 0.1
PCDHGC3-202ENST00000611950 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
PCDHGC3-202ENST00000611950 ERCC6L2Q5T890 1561 aa15.67■□□□□ 0.1
PCDHGC3-202ENST00000611950 ITGAEP38570 1179 aa15.67■□□□□ 0.1
PCDHGC3-202ENST00000611950 ANO8Q9HCE9 1232 aaPredicted RBP15.66■□□□□ 0.1
PCDHGC3-202ENST00000611950 GRIN2AQ12879 1464 aa15.66■□□□□ 0.1
PCDHGC3-202ENST00000611950 KANK4Q5T7N3 995 aaPredicted RBP15.64■□□□□ 0.09
PCDHGC3-202ENST00000611950 KCNA4P22459 653 aa15.63■□□□□ 0.09
PCDHGC3-202ENST00000611950 PODXL2Q9NZ53 605 aa15.62■□□□□ 0.09
PCDHGC3-202ENST00000611950 ARHGAP35Q9NRY4 1499 aa15.61■□□□□ 0.09
PCDHGC3-202ENST00000611950 CEP170Q5SW79 1584 aa15.61■□□□□ 0.09
PCDHGC3-202ENST00000611950 ADAMTS12P58397 1594 aa15.61■□□□□ 0.09
PCDHGC3-202ENST00000611950 IGF1RP08069 1367 aa15.61■□□□□ 0.09
PCDHGC3-202ENST00000611950 NUP160Q12769 1436 aa15.58■□□□□ 0.08
PCDHGC3-202ENST00000611950 FHAD1B1AJZ9 1412 aa15.56■□□□□ 0.08
PCDHGC3-202ENST00000611950 SHROOM2Q13796 1616 aa15.53■□□□□ 0.08
PCDHGC3-202ENST00000611950 CARMIL1Q5VZK9 1371 aa15.52■□□□□ 0.08
PCDHGC3-202ENST00000611950 RRBP1Q9P2E9 1410 aaKnown RBP15.51■□□□□ 0.07
PCDHGC3-202ENST00000611950 NCBP3Q53F19 620 aaKnown RBP15.51■□□□□ 0.07
PCDHGC3-202ENST00000611950 PRG4Q92954 1404 aaPredicted RBP15.5■□□□□ 0.07
PCDHGC3-202ENST00000611950 KIF13AQ9H1H9 1805 aa15.5■□□□□ 0.07
PCDHGC3-202ENST00000611950 JPH4Q96JJ6 628 aa15.48■□□□□ 0.07
PCDHGC3-202ENST00000611950 DHX57Q6P158 1386 aaKnown RBP15.48■□□□□ 0.07
PCDHGC3-202ENST00000611950 ATP1B4Q9UN42 357 aaPredicted RBP15.47■□□□□ 0.07
PCDHGC3-202ENST00000611950 CCNB3Q8WWL7 1395 aa15.44■□□□□ 0.06
PCDHGC3-202ENST00000611950 NPM1P06748 294 aaKnown RBP eCLIP15.44■□□□□ 0.06
PCDHGC3-202ENST00000611950 P3H3Q8IVL6 736 aa15.44■□□□□ 0.06
PCDHGC3-202ENST00000611950 FAM69CQ0P6D2 419 aa15.43■□□□□ 0.06
PCDHGC3-202ENST00000611950 TIAM1Q13009 1591 aa15.42■□□□□ 0.06
PCDHGC3-202ENST00000611950 PKNOX2Q96KN3 472 aa15.41■□□□□ 0.06
PCDHGC3-202ENST00000611950 CLSPNQ9HAW4 1339 aa15.4■□□□□ 0.06
PCDHGC3-202ENST00000611950 MAP3K1Q13233 1512 aa15.38■□□□□ 0.05
PCDHGC3-202ENST00000611950 ABCC10Q5T3U5 1492 aa15.36■□□□□ 0.05
PCDHGC3-202ENST00000611950 LRRC9Q6ZRR7 1453 aa15.36■□□□□ 0.05
PCDHGC3-202ENST00000611950 PCF11O94913 1555 aaKnown RBP15.35■□□□□ 0.05
PCDHGC3-202ENST00000611950 TSPOAP1O95153 1857 aa15.34■□□□□ 0.05
PCDHGC3-202ENST00000611950 ADCY10Q96PN6 1610 aa15.34■□□□□ 0.05
PCDHGC3-202ENST00000611950 FAM50AQ14320 339 aaKnown RBP15.34■□□□□ 0.05
PCDHGC3-202ENST00000611950 PHLDB1Q86UU1 1377 aa15.33■□□□□ 0.04
PCDHGC3-202ENST00000611950 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.04
PCDHGC3-202ENST00000611950 DIP2BQ9P265 1576 aa15.33■□□□□ 0.04
PCDHGC3-202ENST00000611950 KCNH8Q96L42 1107 aa15.32■□□□□ 0.04
PCDHGC3-202ENST00000611950 MAPKBP1O60336 1514 aa15.32■□□□□ 0.04
PCDHGC3-202ENST00000611950 CFAP43Q8NDM7 1665 aa15.31■□□□□ 0.04
PCDHGC3-202ENST00000611950 HIRIP3Q9BW71 556 aaPredicted RBP15.3■□□□□ 0.04
PCDHGC3-202ENST00000611950 CUL7Q14999 1698 aa15.3■□□□□ 0.04
PCDHGC3-202ENST00000611950 RAB3GAP2Q9H2M9 1393 aa15.3■□□□□ 0.04
PCDHGC3-202ENST00000611950 KLHL34Q8N239 644 aa15.29■□□□□ 0.04
PCDHGC3-202ENST00000611950 KDM6BO15054 1643 aa15.29■□□□□ 0.04
PCDHGC3-202ENST00000611950 KIAA0586Q9BVV6 1533 aa15.29■□□□□ 0.04
PCDHGC3-202ENST00000611950 SIN3AQ96ST3 1273 aa15.28■□□□□ 0.04
PCDHGC3-202ENST00000611950 EFCAB5A4FU69 1503 aa15.27■□□□□ 0.03
PCDHGC3-202ENST00000611950 CTTNBP2Q8WZ74 1663 aa15.26■□□□□ 0.03
PCDHGC3-202ENST00000611950 AMER1Q5JTC6 1135 aaPredicted RBP15.26■□□□□ 0.03
PCDHGC3-202ENST00000611950 FYCO1Q9BQS8 1478 aa15.25■□□□□ 0.03
PCDHGC3-202ENST00000611950 CASKIN1Q8WXD9 1431 aa15.24■□□□□ 0.03
PCDHGC3-202ENST00000611950 KDM4FA0A1W2PPD8 638 aa15.23■□□□□ 0.03
PCDHGC3-202ENST00000611950 PTPRGP23470 1445 aa15.23■□□□□ 0.03
PCDHGC3-202ENST00000611950 ARXQ96QS3 562 aa15.23■□□□□ 0.03
PCDHGC3-202ENST00000611950 SETD5Q9C0A6 1442 aa15.22■□□□□ 0.03
PCDHGC3-202ENST00000611950 SALL2Q9Y467 1007 aaPredicted RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms