RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 KIF21BO75037 1637 aa8.93□□□□□ -0.98
SNX13-213ENST00000611725 HIRIP3Q9BW71 556 aaPredicted RBP8.93□□□□□ -0.98
SNX13-213ENST00000611725 RAB3GAP2Q9H2M9 1393 aa8.93□□□□□ -0.98
SNX13-213ENST00000611725 ZNF326Q5BKZ1 582 aaKnown RBP8.93□□□□□ -0.98
SNX13-213ENST00000611725 CNGB1Q14028 1251 aaPredicted RBP8.93□□□□□ -0.98
SNX13-213ENST00000611725 EIF4G1Q04637 1599 aaKnown RBP8.93□□□□□ -0.98
SNX13-213ENST00000611725 ARAP1Q96P48 1450 aa8.92□□□□□ -0.98
SNX13-213ENST00000611725 PEG3Q9GZU2 1588 aa8.92□□□□□ -0.98
SNX13-213ENST00000611725 SETD5Q9C0A6 1442 aa8.92□□□□□ -0.98
SNX13-213ENST00000611725 CHMP7Q8WUX9 453 aaPredicted RBP8.91□□□□□ -0.98
SNX13-213ENST00000611725 PDS5BQ9NTI5 1447 aa8.91□□□□□ -0.98
SNX13-213ENST00000611725 FHOD3Q2V2M9 1422 aa8.91□□□□□ -0.98
SNX13-213ENST00000611725 BCANQ96GW7 911 aa8.91□□□□□ -0.98
SNX13-213ENST00000611725 FANCD2Q9BXW9 1451 aa8.9□□□□□ -0.98
SNX13-213ENST00000611725 FMN1Q68DA7 1419 aa8.9□□□□□ -0.98
SNX13-213ENST00000611725 FGD5Q6ZNL6 1462 aa8.89□□□□□ -0.99
SNX13-213ENST00000611725 HMGXB3Q12766 1538 aa8.89□□□□□ -0.99
SNX13-213ENST00000611725 ERICH3Q5RHP9 1530 aa8.87□□□□□ -0.99
SNX13-213ENST00000611725 PPP1R15AO75807 674 aaPredicted RBP8.86□□□□□ -0.99
SNX13-213ENST00000611725 SLC4A1APQ9BWU0 796 aaKnown RBP8.86□□□□□ -0.99
SNX13-213ENST00000611725 ARHGAP35Q9NRY4 1499 aa8.86□□□□□ -0.99
SNX13-213ENST00000611725 EIF4G2P78344 907 aaKnown RBP eCLIP8.85□□□□□ -0.99
SNX13-213ENST00000611725 CFDP1Q9UEE9 299 aaPredicted RBP8.85□□□□□ -0.99
SNX13-213ENST00000611725 TSPY4P0CV99 314 aa8.85□□□□□ -0.99
SNX13-213ENST00000611725 TSPY10P0CW01 314 aa8.85□□□□□ -0.99
SNX13-213ENST00000611725 PHLDB1Q86UU1 1377 aa8.85□□□□□ -0.99
SNX13-213ENST00000611725 TOP2BQ02880 1626 aa8.85□□□□□ -0.99
SNX13-213ENST00000611725 CUX1P39880 1505 aa8.84□□□□□ -0.99
SNX13-213ENST00000611725 RAD54L2Q9Y4B4 1467 aa8.84□□□□□ -0.99
SNX13-213ENST00000611725 MYT1LQ9UL68 1186 aa8.84□□□□□ -0.99
SNX13-213ENST00000611725 PLEKHD1A6NEE1 506 aa8.84□□□□□ -0.99
SNX13-213ENST00000611725 HNRNPUQ00839 825 aaKnown RBP eCLIP8.84□□□□□ -0.99
SNX13-213ENST00000611725 RRBP1Q9P2E9 1410 aaKnown RBP8.83□□□□□ -1
SNX13-213ENST00000611725 FKBP8Q14318 412 aa8.82□□□□□ -1
SNX13-213ENST00000611725 ERICH6Q7L0X2 663 aa8.8□□□□□ -1
SNX13-213ENST00000611725 MRS2Q9HD23 443 aa8.78□□□□□ -1
SNX13-213ENST00000611725 LRRC9Q6ZRR7 1453 aa8.78□□□□□ -1
SNX13-213ENST00000611725 DNAJC5BQ9UF47 199 aa8.77□□□□□ -1.01
SNX13-213ENST00000611725 POLA1P09884 1462 aaPredicted RBP8.77□□□□□ -1.01
SNX13-213ENST00000611725 FAM9BQ8IZU0 186 aa8.77□□□□□ -1.01
SNX13-213ENST00000611725 CCER2I3L3R5 266 aa8.76□□□□□ -1.01
SNX13-213ENST00000611725 GAPVD1Q14C86 1478 aa8.76□□□□□ -1.01
SNX13-213ENST00000611725 NESP48681 1621 aa8.76□□□□□ -1.01
SNX13-213ENST00000611725 FGD6Q6ZV73 1430 aa8.76□□□□□ -1.01
SNX13-213ENST00000611725 CASKIN1Q8WXD9 1431 aa8.75□□□□□ -1.01
SNX13-213ENST00000611725 MPHOSPH9Q99550 1183 aa8.75□□□□□ -1.01
SNX13-213ENST00000611725 SUPT16HQ9Y5B9 1047 aaKnown RBP8.74□□□□□ -1.01
SNX13-213ENST00000611725 L3MBTL2Q969R5 705 aa8.74□□□□□ -1.01
SNX13-213ENST00000611725 TOPBP1Q92547 1522 aa8.73□□□□□ -1.01
SNX13-213ENST00000611725 FOXD1Q16676 465 aa8.73□□□□□ -1.01
SNX13-213ENST00000611725 HSPA5P11021 654 aaKnown RBP8.73□□□□□ -1.01
SNX13-213ENST00000611725 KDM2AQ9Y2K7 1162 aa8.73□□□□□ -1.01
SNX13-213ENST00000611725 MYOM3Q5VTT5 1437 aa8.72□□□□□ -1.01
SNX13-213ENST00000611725 ERCC6Q03468 1493 aa8.72□□□□□ -1.01
SNX13-213ENST00000611725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.71□□□□□ -1.01
SNX13-213ENST00000611725 ABCA10Q8WWZ4 1543 aa8.71□□□□□ -1.02
SNX13-213ENST00000611725 KCNH8Q96L42 1107 aa8.71□□□□□ -1.02
SNX13-213ENST00000611725 JPH4Q96JJ6 628 aa8.71□□□□□ -1.02
SNX13-213ENST00000611725 AQRO60306 1485 aaKnown RBP eCLIP8.7□□□□□ -1.02
SNX13-213ENST00000611725 PKD2Q13563 968 aa8.7□□□□□ -1.02
SNX13-213ENST00000611725 CARMIL2Q6F5E8 1435 aa8.69□□□□□ -1.02
SNX13-213ENST00000611725 TMC1Q8TDI8 760 aa8.69□□□□□ -1.02
SNX13-213ENST00000611725 CCDC18Q5T9S5 1454 aa8.69□□□□□ -1.02
SNX13-213ENST00000611725 UACAQ9BZF9 1416 aa8.68□□□□□ -1.02
SNX13-213ENST00000611725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.68□□□□□ -1.02
SNX13-213ENST00000611725 CARD11Q9BXL7 1154 aa8.68□□□□□ -1.02
SNX13-213ENST00000611725 FYCO1Q9BQS8 1478 aa8.68□□□□□ -1.02
SNX13-213ENST00000611725 NCOA2Q15596 1464 aa8.67□□□□□ -1.02
SNX13-213ENST00000611725 RGL3Q3MIN7 710 aa8.67□□□□□ -1.02
SNX13-213ENST00000611725 ZNF644Q9H582 1327 aaPredicted RBP8.66□□□□□ -1.02
SNX13-213ENST00000611725 HFM1A2PYH4 1435 aa8.66□□□□□ -1.02
SNX13-213ENST00000611725 IRX6P78412 446 aaPredicted RBP8.66□□□□□ -1.02
SNX13-213ENST00000611725 TIAM1Q13009 1591 aa8.66□□□□□ -1.02
SNX13-213ENST00000611725 MAP3K1Q13233 1512 aa8.65□□□□□ -1.02
SNX13-213ENST00000611725 CC2D2AQ9P2K1 1620 aa8.65□□□□□ -1.02
SNX13-213ENST00000611725 ANKRD30AQ9BXX3 1397 aa8.65□□□□□ -1.02
SNX13-213ENST00000611725 EFCAB5A4FU69 1503 aa8.65□□□□□ -1.03
SNX13-213ENST00000611725 NUP155O75694 1391 aa8.65□□□□□ -1.03
SNX13-213ENST00000611725 DNMBPQ6XZF7 1577 aa8.63□□□□□ -1.03
SNX13-213ENST00000611725 DCAF11Q8TEB1 546 aa8.63□□□□□ -1.03
SNX13-213ENST00000611725 GRIN2BQ13224 1484 aa8.63□□□□□ -1.03
SNX13-213ENST00000611725 BIVM-ERCC5R4GMW8 1640 aa8.62□□□□□ -1.03
SNX13-213ENST00000611725 NAIPQ13075 1403 aa8.61□□□□□ -1.03
SNX13-213ENST00000611725 PRKRIP1Q9H875 184 aaPredicted RBP8.61□□□□□ -1.03
SNX13-213ENST00000611725 NPM1P06748 294 aaKnown RBP eCLIP8.6□□□□□ -1.03
SNX13-213ENST00000611725 SALL2Q9Y467 1007 aaPredicted RBP8.6□□□□□ -1.03
SNX13-213ENST00000611725 UNC13AQ9UPW8 1703 aa8.6□□□□□ -1.03
SNX13-213ENST00000611725 RSPH4AQ5TD94 716 aa8.6□□□□□ -1.03
SNX13-213ENST00000611725 MIA2Q96PC5 1412 aa8.59□□□□□ -1.03
SNX13-213ENST00000611725 URB2Q14146 1524 aaKnown RBP8.59□□□□□ -1.03
SNX13-213ENST00000611725 SENP3-EIF4A1A0A087X0R7 540 aa8.59□□□□□ -1.03
SNX13-213ENST00000611725 HNRNPMP52272 730 aaKnown RBP eCLIP8.59□□□□□ -1.038e-7■■■■■ 42.1
SNX13-213ENST00000611725 CCDC136Q96JN2 1154 aa8.59□□□□□ -1.03
SNX13-213ENST00000611725 PTPRGP23470 1445 aa8.58□□□□□ -1.04
SNX13-213ENST00000611725 EFCAB2Q5VUJ9 269 aa8.57□□□□□ -1.04
SNX13-213ENST00000611725 TSHZ2Q9NRE2 1034 aa8.57□□□□□ -1.04
SNX13-213ENST00000611725 CHGAP10645 457 aaKnown RBP8.57□□□□□ -1.04
SNX13-213ENST00000611725 WASHC2AQ641Q2 1341 aa8.57□□□□□ -1.04
SNX13-213ENST00000611725 PPP4R2Q9NY27 417 aa8.56□□□□□ -1.04
SNX13-213ENST00000611725 KIAA0586Q9BVV6 1533 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms