RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 NISCHQ9Y2I1 1504 aa12.31□□□□□ -0.44
SNX13-213ENST00000611725 DCAF8L2P0C7V8 631 aa11.2□□□□□ -0.62
SNX13-213ENST00000611725 SUPT5HO00267 1087 aaKnown RBP11.01□□□□□ -0.65
SNX13-213ENST00000611725 SHROOM4Q9ULL8 1493 aa11□□□□□ -0.65
SNX13-213ENST00000611725 CHIC1Q5VXU3 224 aa10.38□□□□□ -0.75
SNX13-213ENST00000611725 ZCCHC6Q5VYS8 1495 aaKnown RBP10.32□□□□□ -0.76
SNX13-213ENST00000611725 PCGF6Q9BYE7 350 aa10.25□□□□□ -0.77
SNX13-213ENST00000611725 FAM9AQ8IZU1 332 aaPredicted RBP10.24□□□□□ -0.77
SNX13-213ENST00000611725 TRIM41Q8WV44 630 aa10.23□□□□□ -0.77
SNX13-213ENST00000611725 EHMT2Q96KQ7 1210 aa10.21□□□□□ -0.78
SNX13-213ENST00000611725 LOC105371045A0A1W2PR82 267 aa10.12□□□□□ -0.79
SNX13-213ENST00000611725 CCDC180Q9P1Z9 1646 aa10.08□□□□□ -0.8
SNX13-213ENST00000611725 ABCC9O60706 1549 aa10.06□□□□□ -0.8
SNX13-213ENST00000611725 HRCP23327 699 aa10.04□□□□□ -0.8
SNX13-213ENST00000611725 TRIM26Q12899 539 aaPredicted RBP9.97□□□□□ -0.81
SNX13-213ENST00000611725 DCAF1Q9Y4B6 1507 aa9.95□□□□□ -0.82
SNX13-213ENST00000611725 ZEB1P37275 1124 aaPredicted RBP9.9□□□□□ -0.83
SNX13-213ENST00000611725 UBTFP17480 764 aaKnown RBP9.87□□□□□ -0.83
SNX13-213ENST00000611725 RSF1Q96T23 1441 aaPredicted RBP9.87□□□□□ -0.83
SNX13-213ENST00000611725 TTBK1Q5TCY1 1321 aaPredicted RBP9.87□□□□□ -0.83
SNX13-213ENST00000611725 APLP2Q06481 763 aa9.85□□□□□ -0.83
SNX13-213ENST00000611725 PABPN1Q86U42 306 aaKnown RBP eCLIP9.83□□□□□ -0.84
SNX13-213ENST00000611725 PPARGC1BQ86YN6 1023 aaKnown RBP9.83□□□□□ -0.84
SNX13-213ENST00000611725 MYO15BQ96JP2 1530 aa9.82□□□□□ -0.84
SNX13-213ENST00000611725 SCRIBQ14160 1630 aa9.79□□□□□ -0.84
SNX13-213ENST00000611725 CCER1Q8TC90 406 aaPredicted RBP9.79□□□□□ -0.84
SNX13-213ENST00000611725 RANGAP1P46060 587 aaPredicted RBP9.75□□□□□ -0.85
SNX13-213ENST00000611725 CECR2Q9BXF3 1484 aa9.69□□□□□ -0.86
SNX13-213ENST00000611725 CSRNP3Q8WYN3 585 aa9.68□□□□□ -0.86
SNX13-213ENST00000611725 NACADO15069 1562 aa9.66□□□□□ -0.86
SNX13-213ENST00000611725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.63□□□□□ -0.87
SNX13-213ENST00000611725 HNRNPUL2Q1KMD3 747 aaKnown RBP9.57□□□□□ -0.88
SNX13-213ENST00000611725 RB1CC1Q8TDY2 1594 aa9.56□□□□□ -0.88
SNX13-213ENST00000611725 MROH2BQ7Z745 1585 aa9.55□□□□□ -0.88
SNX13-213ENST00000611725 CENPBP07199 599 aaPredicted RBP9.53□□□□□ -0.88
SNX13-213ENST00000611725 BAZ1AQ9NRL2 1556 aaPredicted RBP9.52□□□□□ -0.89
SNX13-213ENST00000611725 ATP1B4Q9UN42 357 aaPredicted RBP9.48□□□□□ -0.89
SNX13-213ENST00000611725 EEA1Q15075 1411 aa9.46□□□□□ -0.89
SNX13-213ENST00000611725 PELP1Q8IZL8 1130 aaKnown RBP9.46□□□□□ -0.9
SNX13-213ENST00000611725 WRNQ14191 1432 aaPredicted RBP eCLIP9.45□□□□□ -0.9
SNX13-213ENST00000611725 ITGAEP38570 1179 aa9.43□□□□□ -0.9
SNX13-213ENST00000611725 DIEXFQ68CQ4 756 aaKnown RBP9.42□□□□□ -0.9
SNX13-213ENST00000611725 TNIKQ9UKE5 1360 aa9.42□□□□□ -0.9
SNX13-213ENST00000611725 CEP162Q5TB80 1403 aa9.42□□□□□ -0.9
SNX13-213ENST00000611725 SOGA1O94964 1423 aa9.4□□□□□ -0.91
SNX13-213ENST00000611725 CCDC88BA6NC98 1476 aa9.39□□□□□ -0.91
SNX13-213ENST00000611725 YTHDC1Q96MU7 727 aaKnown RBP9.38□□□□□ -0.91
SNX13-213ENST00000611725 CLIP1P30622 1438 aa9.38□□□□□ -0.91
SNX13-213ENST00000611725 GOLGA3Q08378 1498 aa9.35□□□□□ -0.91
SNX13-213ENST00000611725 BAZ1BQ9UIG0 1483 aaKnown RBP9.35□□□□□ -0.91
SNX13-213ENST00000611725 ZNF316A6NFI3 1004 aaPredicted RBP9.33□□□□□ -0.92
SNX13-213ENST00000611725 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
SNX13-213ENST00000611725 TOP2AP11388 1531 aaKnown RBP9.3□□□□□ -0.92
SNX13-213ENST00000611725 WIZO95785 1651 aa9.28□□□□□ -0.92
SNX13-213ENST00000611725 ABCC8Q09428 1581 aa9.28□□□□□ -0.92
SNX13-213ENST00000611725 FAM50AQ14320 339 aaKnown RBP9.27□□□□□ -0.93
SNX13-213ENST00000611725 P3H3Q8IVL6 736 aa9.26□□□□□ -0.93
SNX13-213ENST00000611725 ATAD2BQ9ULI0 1458 aa9.25□□□□□ -0.93
SNX13-213ENST00000611725 KIF27Q86VH2 1401 aa9.23□□□□□ -0.93
SNX13-213ENST00000611725 ACIN1Q9UKV3 1341 aaKnown RBP9.23□□□□□ -0.93
SNX13-213ENST00000611725 SMARCA4P51532 1647 aa9.21□□□□□ -0.93
SNX13-213ENST00000611725 VPS8Q8N3P4 1428 aa9.21□□□□□ -0.94
SNX13-213ENST00000611725 RUSC2Q8N2Y8 1516 aa9.2□□□□□ -0.94
SNX13-213ENST00000611725 GTF3C3Q9Y5Q9 886 aa9.19□□□□□ -0.94
SNX13-213ENST00000611725 SMARCA2P51531 1590 aa9.18□□□□□ -0.94
SNX13-213ENST00000611725 SCAF1Q9H7N4 1312 aaKnown RBP9.17□□□□□ -0.94
SNX13-213ENST00000611725 NEUROD1Q13562 356 aa9.16□□□□□ -0.94
SNX13-213ENST00000611725 KANK4Q5T7N3 995 aaPredicted RBP9.13□□□□□ -0.95
SNX13-213ENST00000611725 RAPGEF2Q9Y4G8 1499 aa9.12□□□□□ -0.95
SNX13-213ENST00000611725 CLSPNQ9HAW4 1339 aa9.12□□□□□ -0.95
SNX13-213ENST00000611725 CARMIL1Q5VZK9 1371 aa9.11□□□□□ -0.95
SNX13-213ENST00000611725 MIER1Q8N108 512 aa9.11□□□□□ -0.95
SNX13-213ENST00000611725 CADPSQ9ULU8 1353 aa9.11□□□□□ -0.95
SNX13-213ENST00000611725 CUX2O14529 1486 aa9.11□□□□□ -0.95
SNX13-213ENST00000611725 NEFLP07196 543 aa9.1□□□□□ -0.95
SNX13-213ENST00000611725 NCAPD3P42695 1498 aa9.09□□□□□ -0.95
SNX13-213ENST00000611725 TRIM52Q96A61 297 aa9.09□□□□□ -0.95
SNX13-213ENST00000611725 ARID3CA6NKF2 412 aa9.08□□□□□ -0.96
SNX13-213ENST00000611725 CCNB3Q8WWL7 1395 aa9.07□□□□□ -0.96
SNX13-213ENST00000611725 MTUS2Q5JR59 1369 aa9.06□□□□□ -0.96
SNX13-213ENST00000611725 MYT1Q01538 1121 aa9.05□□□□□ -0.96
SNX13-213ENST00000611725 FBLN2P98095 1184 aa9.04□□□□□ -0.96
SNX13-213ENST00000611725 CDK11AQ9UQ88 783 aaPredicted RBP9.03□□□□□ -0.96
SNX13-213ENST00000611725 IGF1RP08069 1367 aa9.02□□□□□ -0.97
SNX13-213ENST00000611725 FHAD1B1AJZ9 1412 aa9.02□□□□□ -0.97
SNX13-213ENST00000611725 TONSLQ96HA7 1378 aa9.01□□□□□ -0.97
SNX13-213ENST00000611725 DDX10Q13206 875 aaKnown RBP9□□□□□ -0.97
SNX13-213ENST00000611725 ANP32CO43423 234 aa9□□□□□ -0.97
SNX13-213ENST00000611725 CHIC2Q9UKJ5 165 aa9□□□□□ -0.97
SNX13-213ENST00000611725 BICRAQ9NZM4 1560 aa8.99□□□□□ -0.97
SNX13-213ENST00000611725 TDRD9Q8NDG6 1382 aaKnown RBP8.99□□□□□ -0.97
SNX13-213ENST00000611725 CFTRP13569 1480 aa8.98□□□□□ -0.97
SNX13-213ENST00000611725 PRXQ9BXM0 1461 aa8.98□□□□□ -0.97
SNX13-213ENST00000611725 SIN3AQ96ST3 1273 aa8.97□□□□□ -0.97
SNX13-213ENST00000611725 POLR3GLQ9BT43 218 aa8.97□□□□□ -0.97
SNX13-213ENST00000611725 TIMELESSQ9UNS1 1208 aa8.96□□□□□ -0.98
SNX13-213ENST00000611725 SYNJ1O43426 1573 aa8.96□□□□□ -0.98
SNX13-213ENST00000611725 DHX57Q6P158 1386 aaKnown RBP8.96□□□□□ -0.98
SNX13-213ENST00000611725 ZNF777Q9ULD5 760 aaPredicted RBP8.95□□□□□ -0.98
SNX13-213ENST00000611725 RRP7BPQ9NSQ0 103 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms