RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PROM2Q8N271 834 aa11.26□□□□□ -0.61
ZNF540-206ENST00000589117 CCER1Q8TC90 406 aaPredicted RBP11.26□□□□□ -0.61
ZNF540-206ENST00000589117 TAOK2Q9UL54 1235 aa11.26□□□□□ -0.61
ZNF540-206ENST00000589117 BCANQ96GW7 911 aa11.24□□□□□ -0.61
ZNF540-206ENST00000589117 TOP2BQ02880 1626 aa11.24□□□□□ -0.61
ZNF540-206ENST00000589117 APLP2Q06481 763 aa11.23□□□□□ -0.61
ZNF540-206ENST00000589117 CLIP1P30622 1438 aa11.21□□□□□ -0.62
ZNF540-206ENST00000589117 KDM2AQ9Y2K7 1162 aa11.2□□□□□ -0.62
ZNF540-206ENST00000589117 BIVM-ERCC5R4GMW8 1640 aa11.19□□□□□ -0.62
ZNF540-206ENST00000589117 FBLN2P98095 1184 aa11.18□□□□□ -0.62
ZNF540-206ENST00000589117 CFTRP13569 1480 aa11.17□□□□□ -0.62
ZNF540-206ENST00000589117 TTBK1Q5TCY1 1321 aaPredicted RBP11.16□□□□□ -0.62
ZNF540-206ENST00000589117 VPS8Q8N3P4 1428 aa11.15□□□□□ -0.62
ZNF540-206ENST00000589117 RAPGEF2Q9Y4G8 1499 aa11.15□□□□□ -0.62
ZNF540-206ENST00000589117 KIF27Q86VH2 1401 aa11.14□□□□□ -0.63
ZNF540-206ENST00000589117 ERICH3Q5RHP9 1530 aa11.14□□□□□ -0.63
ZNF540-206ENST00000589117 VSIG10Q8N0Z9 540 aa11.13□□□□□ -0.63
ZNF540-206ENST00000589117 NPM1P06748 294 aaKnown RBP eCLIP11.12□□□□□ -0.63
ZNF540-206ENST00000589117 TPRNQ4KMQ1 711 aa11.12□□□□□ -0.63
ZNF540-206ENST00000589117 PRXQ9BXM0 1461 aa11.11□□□□□ -0.63
ZNF540-206ENST00000589117 CUX1P39880 1505 aa11.1□□□□□ -0.63
ZNF540-206ENST00000589117 CADPSQ9ULU8 1353 aa11.09□□□□□ -0.63
ZNF540-206ENST00000589117 RANGAP1P46060 587 aaPredicted RBP11.07□□□□□ -0.64
ZNF540-206ENST00000589117 PRDM2Q13029 1718 aa11.05□□□□□ -0.64
ZNF540-206ENST00000589117 PAXIP1Q6ZW49 1069 aaPredicted RBP11.03□□□□□ -0.64
ZNF540-206ENST00000589117 CFAP44Q96MT7 982 aa11.01□□□□□ -0.65
ZNF540-206ENST00000589117 SPINK5Q9NQ38 1064 aaPredicted RBP11.01□□□□□ -0.65
ZNF540-206ENST00000589117 CC2D2AQ9P2K1 1620 aa10.99□□□□□ -0.65
ZNF540-206ENST00000589117 CUX2O14529 1486 aa10.99□□□□□ -0.65
ZNF540-206ENST00000589117 POLA2Q14181 598 aa10.98□□□□□ -0.65
ZNF540-206ENST00000589117 IGF1RP08069 1367 aa10.97□□□□□ -0.65
ZNF540-206ENST00000589117 TRHP20396 242 aaPredicted RBP10.97□□□□□ -0.65
ZNF540-206ENST00000589117 DIEXFQ68CQ4 756 aaKnown RBP10.97□□□□□ -0.65
ZNF540-206ENST00000589117 ARAP1Q96P48 1450 aa10.96□□□□□ -0.65
ZNF540-206ENST00000589117 BBXQ8WY36 941 aaPredicted RBP10.96□□□□□ -0.66
ZNF540-206ENST00000589117 CARMIL1Q5VZK9 1371 aa10.95□□□□□ -0.66
ZNF540-206ENST00000589117 ECM2O94769 699 aaPredicted RBP10.95□□□□□ -0.66
ZNF540-206ENST00000589117 RGL2O15211 777 aa10.95□□□□□ -0.66
ZNF540-206ENST00000589117 TSHZ2Q9NRE2 1034 aa10.95□□□□□ -0.66
ZNF540-206ENST00000589117 FANCD2Q9BXW9 1451 aa10.95□□□□□ -0.66
ZNF540-206ENST00000589117 CLSPNQ9HAW4 1339 aa10.94□□□□□ -0.66
ZNF540-206ENST00000589117 FGD5Q6ZNL6 1462 aa10.94□□□□□ -0.66
ZNF540-206ENST00000589117 ZNF316A6NFI3 1004 aaPredicted RBP10.93□□□□□ -0.66
ZNF540-206ENST00000589117 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.92□□□□□ -0.66
ZNF540-206ENST00000589117 ARHGAP35Q9NRY4 1499 aa10.91□□□□□ -0.66
ZNF540-206ENST00000589117 KLHL34Q8N239 644 aa10.9□□□□□ -0.67
ZNF540-206ENST00000589117 KANK4Q5T7N3 995 aaPredicted RBP10.89□□□□□ -0.67
ZNF540-206ENST00000589117 DNMBPQ6XZF7 1577 aa10.89□□□□□ -0.67
ZNF540-206ENST00000589117 FHAD1B1AJZ9 1412 aa10.88□□□□□ -0.67
ZNF540-206ENST00000589117 SPOCK2Q92563 424 aa10.88□□□□□ -0.67
ZNF540-206ENST00000589117 MAP3K1Q13233 1512 aa10.88□□□□□ -0.67
ZNF540-206ENST00000589117 CENPBP07199 599 aaPredicted RBP10.87□□□□□ -0.67
ZNF540-206ENST00000589117 RRBP1Q9P2E9 1410 aaKnown RBP10.87□□□□□ -0.67
ZNF540-206ENST00000589117 ABCA10Q8WWZ4 1543 aa10.86□□□□□ -0.67
ZNF540-206ENST00000589117 CCNB3Q8WWL7 1395 aa10.86□□□□□ -0.67
ZNF540-206ENST00000589117 LAMC3Q9Y6N6 1575 aa10.85□□□□□ -0.67
ZNF540-206ENST00000589117 TOPBP1Q92547 1522 aa10.85□□□□□ -0.67
ZNF540-206ENST00000589117 PDS5BQ9NTI5 1447 aa10.83□□□□□ -0.68
ZNF540-206ENST00000589117 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
ZNF540-206ENST00000589117 CUL7Q14999 1698 aa10.81□□□□□ -0.68
ZNF540-206ENST00000589117 RAD54L2Q9Y4B4 1467 aa10.8□□□□□ -0.68
ZNF540-206ENST00000589117 SPRYD3Q8NCJ5 442 aa10.8□□□□□ -0.68
ZNF540-206ENST00000589117 TIAM1Q13009 1591 aa10.8□□□□□ -0.68
ZNF540-206ENST00000589117 EFCAB5A4FU69 1503 aa10.79□□□□□ -0.68
ZNF540-206ENST00000589117 DHX57Q6P158 1386 aaKnown RBP10.79□□□□□ -0.68
ZNF540-206ENST00000589117 NESP48681 1621 aa10.79□□□□□ -0.68
ZNF540-206ENST00000589117 ACIN1Q9UKV3 1341 aaKnown RBP10.79□□□□□ -0.68
ZNF540-206ENST00000589117 CAPN15O75808 1086 aa10.78□□□□□ -0.68
ZNF540-206ENST00000589117 ATP1B4Q9UN42 357 aaPredicted RBP10.78□□□□□ -0.68
ZNF540-206ENST00000589117 LRRC9Q6ZRR7 1453 aa10.77□□□□□ -0.68
ZNF540-206ENST00000589117 ABCB7O75027 752 aa10.77□□□□□ -0.69
ZNF540-206ENST00000589117 FMN1Q68DA7 1419 aa10.76□□□□□ -0.69
ZNF540-206ENST00000589117 AQRO60306 1485 aaKnown RBP eCLIP10.76□□□□□ -0.69
ZNF540-206ENST00000589117 CHGAP10645 457 aaKnown RBP10.75□□□□□ -0.69
ZNF540-206ENST00000589117 ITGAEP38570 1179 aa10.75□□□□□ -0.69
ZNF540-206ENST00000589117 TIMELESSQ9UNS1 1208 aa10.75□□□□□ -0.69
ZNF540-206ENST00000589117 FYCO1Q9BQS8 1478 aa10.75□□□□□ -0.69
ZNF540-206ENST00000589117 P3H3Q8IVL6 736 aa10.75□□□□□ -0.69
ZNF540-206ENST00000589117 CASKIN1Q8WXD9 1431 aa10.74□□□□□ -0.69
ZNF540-206ENST00000589117 URB2Q14146 1524 aaKnown RBP10.73□□□□□ -0.69
ZNF540-206ENST00000589117 GAPVD1Q14C86 1478 aa10.72□□□□□ -0.69
ZNF540-206ENST00000589117 FAM50AQ14320 339 aaKnown RBP10.72□□□□□ -0.69
ZNF540-206ENST00000589117 PLCD3Q8N3E9 789 aa10.72□□□□□ -0.69
ZNF540-206ENST00000589117 SETD5Q9C0A6 1442 aa10.71□□□□□ -0.69
ZNF540-206ENST00000589117 TDRD9Q8NDG6 1382 aaKnown RBP10.71□□□□□ -0.7
ZNF540-206ENST00000589117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.71□□□□□ -0.7
ZNF540-206ENST00000589117 CTTNBP2Q8WZ74 1663 aa10.71□□□□□ -0.7
ZNF540-206ENST00000589117 FHOD3Q2V2M9 1422 aa10.71□□□□□ -0.7
ZNF540-206ENST00000589117 CFAP43Q8NDM7 1665 aa10.7□□□□□ -0.7
ZNF540-206ENST00000589117 NEUROD1Q13562 356 aa10.7□□□□□ -0.7
ZNF540-206ENST00000589117 RAB3GAP2Q9H2M9 1393 aa10.7□□□□□ -0.7
ZNF540-206ENST00000589117 PCF11O94913 1555 aaKnown RBP10.69□□□□□ -0.7
ZNF540-206ENST00000589117 PHLDB1Q86UU1 1377 aa10.69□□□□□ -0.7
ZNF540-206ENST00000589117 WDR97A6NE52 1622 aa10.68□□□□□ -0.7
ZNF540-206ENST00000589117 ABCA5Q8WWZ7 1642 aa10.68□□□□□ -0.7
ZNF540-206ENST00000589117 PELP1Q8IZL8 1130 aaKnown RBP10.68□□□□□ -0.7
ZNF540-206ENST00000589117 MTUS2Q5JR59 1369 aa10.67□□□□□ -0.7
ZNF540-206ENST00000589117 TULP1O00294 542 aaPredicted RBP10.67□□□□□ -0.7
ZNF540-206ENST00000589117 MIER1Q8N108 512 aa10.67□□□□□ -0.7
ZNF540-206ENST00000589117 DNAJC5Q9H3Z4 198 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms