RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 CHIC1Q5VXU3 224 aa18.05■□□□□ 0.48
ZNF540-206ENST00000589117 AEBP2Q6ZN18 517 aaPredicted RBP17.88■□□□□ 0.45
ZNF540-206ENST00000589117 PHF23Q9BUL5 403 aaPredicted RBP16.16■□□□□ 0.18
ZNF540-206ENST00000589117 NISCHQ9Y2I1 1504 aa15.41■□□□□ 0.06
ZNF540-206ENST00000589117 PLPPR3Q6T4P5 718 aa14.95□□□□□ -0.02
ZNF540-206ENST00000589117 SENP3Q9H4L4 574 aaPredicted RBP14.74□□□□□ -0.05
ZNF540-206ENST00000589117 ADRA2BP18089 450 aa14.3□□□□□ -0.12
ZNF540-206ENST00000589117 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
ZNF540-206ENST00000589117 KCNA4P22459 653 aa14.16□□□□□ -0.14
ZNF540-206ENST00000589117 PPP6R1Q9UPN7 881 aa14.04□□□□□ -0.16
ZNF540-206ENST00000589117 FOXD1Q16676 465 aa13.78□□□□□ -0.2
ZNF540-206ENST00000589117 CSRNP3Q8WYN3 585 aa13.64□□□□□ -0.23
ZNF540-206ENST00000589117 SLC4A1APQ9BWU0 796 aaKnown RBP13.48□□□□□ -0.25
ZNF540-206ENST00000589117 PPP4R3CPQ6ZMV5 832 aa13.37□□□□□ -0.27
ZNF540-206ENST00000589117 CCDC180Q9P1Z9 1646 aa13.19□□□□□ -0.3
ZNF540-206ENST00000589117 PIAS4Q8N2W9 510 aaPredicted RBP13.14□□□□□ -0.31
ZNF540-206ENST00000589117 ZBTB22O15209 634 aa13.14□□□□□ -0.31
ZNF540-206ENST00000589117 NPM3O75607 178 aaKnown RBP13.13□□□□□ -0.31
ZNF540-206ENST00000589117 NCBP3Q53F19 620 aaKnown RBP13.05□□□□□ -0.32
ZNF540-206ENST00000589117 ZCCHC6Q5VYS8 1495 aaKnown RBP13□□□□□ -0.33
ZNF540-206ENST00000589117 SHROOM4Q9ULL8 1493 aa12.93□□□□□ -0.34
ZNF540-206ENST00000589117 DCAF8L2P0C7V8 631 aa12.78□□□□□ -0.36
ZNF540-206ENST00000589117 RTN4Q9NQC3 1192 aaKnown RBP12.73□□□□□ -0.37
ZNF540-206ENST00000589117 DCAF1Q9Y4B6 1507 aa12.73□□□□□ -0.37
ZNF540-206ENST00000589117 SLC24A1O60721 1099 aa12.72□□□□□ -0.37
ZNF540-206ENST00000589117 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
ZNF540-206ENST00000589117 CNKSR2Q8WXI2 1034 aa12.71□□□□□ -0.37
ZNF540-206ENST00000589117 FOXD4L1Q9NU39 408 aa12.6□□□□□ -0.39
ZNF540-206ENST00000589117 MAPK8IP2Q13387 824 aaPredicted RBP12.53□□□□□ -0.4
ZNF540-206ENST00000589117 SCAF1Q9H7N4 1312 aaKnown RBP12.45□□□□□ -0.42
ZNF540-206ENST00000589117 AMER1Q5JTC6 1135 aaPredicted RBP12.44□□□□□ -0.42
ZNF540-206ENST00000589117 MYO15BQ96JP2 1530 aa12.43□□□□□ -0.42
ZNF540-206ENST00000589117 DNAJC5BQ9UF47 199 aa12.36□□□□□ -0.43
ZNF540-206ENST00000589117 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
ZNF540-206ENST00000589117 RNF216Q9NWF9 866 aaPredicted RBP12.26□□□□□ -0.45
ZNF540-206ENST00000589117 NACADO15069 1562 aa12.25□□□□□ -0.45
ZNF540-206ENST00000589117 FKBP8Q14318 412 aa12.23□□□□□ -0.45
ZNF540-206ENST00000589117 ABCC9O60706 1549 aa12.23□□□□□ -0.45
ZNF540-206ENST00000589117 SCRIBQ14160 1630 aa12.22□□□□□ -0.45
ZNF540-206ENST00000589117 RSF1Q96T23 1441 aaPredicted RBP12.13□□□□□ -0.47
ZNF540-206ENST00000589117 MSH5O43196 834 aa12.12□□□□□ -0.47
ZNF540-206ENST00000589117 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
ZNF540-206ENST00000589117 HOXD11P31277 338 aaPredicted RBP12.02□□□□□ -0.49
ZNF540-206ENST00000589117 MYCNP04198 464 aaPredicted RBP11.96□□□□□ -0.49
ZNF540-206ENST00000589117 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
ZNF540-206ENST00000589117 DMRT2Q9Y5R5 561 aa11.95□□□□□ -0.5
ZNF540-206ENST00000589117 ATXN8OSP0DMR3 200 aa11.94□□□□□ -0.5
ZNF540-206ENST00000589117 CECR2Q9BXF3 1484 aa11.92□□□□□ -0.5
ZNF540-206ENST00000589117 MROH2BQ7Z745 1585 aa11.9□□□□□ -0.5
ZNF540-206ENST00000589117 LOC105371045A0A1W2PR82 267 aa11.9□□□□□ -0.5
ZNF540-206ENST00000589117 BAZ1AQ9NRL2 1556 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-206ENST00000589117 ATF5Q9Y2D1 282 aaPredicted RBP11.88□□□□□ -0.51
ZNF540-206ENST00000589117 PCGF6Q9BYE7 350 aa11.86□□□□□ -0.51
ZNF540-206ENST00000589117 HRCP23327 699 aa11.82□□□□□ -0.52
ZNF540-206ENST00000589117 WIZO95785 1651 aa11.81□□□□□ -0.52
ZNF540-206ENST00000589117 TRIM26Q12899 539 aaPredicted RBP11.76□□□□□ -0.53
ZNF540-206ENST00000589117 SMARCA4P51532 1647 aa11.73□□□□□ -0.53
ZNF540-206ENST00000589117 FAM9AQ8IZU1 332 aaPredicted RBP11.72□□□□□ -0.53
ZNF540-206ENST00000589117 TOP2AP11388 1531 aaKnown RBP11.72□□□□□ -0.53
ZNF540-206ENST00000589117 UNC13AQ9UPW8 1703 aa11.7□□□□□ -0.54
ZNF540-206ENST00000589117 CCDC88BA6NC98 1476 aa11.64□□□□□ -0.55
ZNF540-206ENST00000589117 PABPN1Q86U42 306 aaKnown RBP eCLIP11.61□□□□□ -0.55
ZNF540-206ENST00000589117 SMARCA2P51531 1590 aa11.6□□□□□ -0.55
ZNF540-206ENST00000589117 EIF4G1Q04637 1599 aaKnown RBP11.6□□□□□ -0.55
ZNF540-206ENST00000589117 BICRAQ9NZM4 1560 aa11.59□□□□□ -0.55
ZNF540-206ENST00000589117 ZEB1P37275 1124 aaPredicted RBP11.57□□□□□ -0.56
ZNF540-206ENST00000589117 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
ZNF540-206ENST00000589117 PEG3Q9GZU2 1588 aa11.56□□□□□ -0.56
ZNF540-206ENST00000589117 EEA1Q15075 1411 aa11.53□□□□□ -0.56
ZNF540-206ENST00000589117 PRKCSHP14314 528 aaPredicted RBP11.5□□□□□ -0.57
ZNF540-206ENST00000589117 ABCC8Q09428 1581 aa11.49□□□□□ -0.57
ZNF540-206ENST00000589117 DCAF8L1A6NGE4 600 aa11.48□□□□□ -0.57
ZNF540-206ENST00000589117 U3KPZ7 1027 aaPredicted RBP11.48□□□□□ -0.57
ZNF540-206ENST00000589117 ATAD2BQ9ULI0 1458 aa11.47□□□□□ -0.57
ZNF540-206ENST00000589117 BAZ1BQ9UIG0 1483 aaKnown RBP11.46□□□□□ -0.57
ZNF540-206ENST00000589117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.46□□□□□ -0.57
ZNF540-206ENST00000589117 WRNQ14191 1432 aaPredicted RBP eCLIP11.44□□□□□ -0.58
ZNF540-206ENST00000589117 HAP1P54257 671 aaPredicted RBP11.43□□□□□ -0.58
ZNF540-206ENST00000589117 PPARGC1BQ86YN6 1023 aaKnown RBP11.42□□□□□ -0.58
ZNF540-206ENST00000589117 TNIKQ9UKE5 1360 aa11.42□□□□□ -0.58
ZNF540-206ENST00000589117 SOGA1O94964 1423 aa11.4□□□□□ -0.58
ZNF540-206ENST00000589117 UBTFP17480 764 aaKnown RBP11.4□□□□□ -0.59
ZNF540-206ENST00000589117 SAMD1Q6SPF0 538 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-206ENST00000589117 CEP162Q5TB80 1403 aa11.37□□□□□ -0.59
ZNF540-206ENST00000589117 ZNF219Q9P2Y4 722 aaPredicted RBP11.36□□□□□ -0.59
ZNF540-206ENST00000589117 GOLGA3Q08378 1498 aa11.36□□□□□ -0.59
ZNF540-206ENST00000589117 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
ZNF540-206ENST00000589117 MKRN4PQ13434 485 aaPredicted RBP11.34□□□□□ -0.59
ZNF540-206ENST00000589117 IFNLR1Q8IU57 520 aaPredicted RBP11.34□□□□□ -0.59
ZNF540-206ENST00000589117 CEP164Q9UPV0 1460 aa11.32□□□□□ -0.6
ZNF540-206ENST00000589117 VASPP50552 380 aaPredicted RBP11.32□□□□□ -0.6
ZNF540-206ENST00000589117 FBXO3Q9UK99 471 aa11.31□□□□□ -0.6
ZNF540-206ENST00000589117 NCAPD3P42695 1498 aa11.31□□□□□ -0.6
ZNF540-206ENST00000589117 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.31□□□□□ -0.6
ZNF540-206ENST00000589117 HNRNPUL2Q1KMD3 747 aaKnown RBP11.31□□□□□ -0.6
ZNF540-206ENST00000589117 HMGXB3Q12766 1538 aa11.3□□□□□ -0.6
ZNF540-206ENST00000589117 RUSC2Q8N2Y8 1516 aa11.3□□□□□ -0.6
ZNF540-206ENST00000589117 PKD2Q13563 968 aa11.29□□□□□ -0.6
ZNF540-206ENST00000589117 SYNJ1O43426 1573 aa11.28□□□□□ -0.6
ZNF540-206ENST00000589117 KIF21BO75037 1637 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms