RNA–Protein interactions for RNA: ENST00000576713.6

NPLOC4-219, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-219ENST00000576713 FKBP8Q14318 412 aa16.61■□□□□ 0.25
NPLOC4-219ENST00000576713 POLA1P09884 1462 aaPredicted RBP16.61■□□□□ 0.25
NPLOC4-219ENST00000576713 ZNF608Q9ULD9 1512 aaPredicted RBP16.58■□□□□ 0.24
NPLOC4-219ENST00000576713 TARBP1Q13395 1621 aaKnown RBP16.57■□□□□ 0.24
NPLOC4-219ENST00000576713 SYNJ1O43426 1573 aa16.57■□□□□ 0.24
NPLOC4-219ENST00000576713 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
NPLOC4-219ENST00000576713 RAD54L2Q9Y4B4 1467 aa16.56■□□□□ 0.24
NPLOC4-219ENST00000576713 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
NPLOC4-219ENST00000576713 FBLN2P98095 1184 aa16.55■□□□□ 0.24
NPLOC4-219ENST00000576713 WRNQ14191 1432 aaPredicted RBP eCLIP16.53■□□□□ 0.24
NPLOC4-219ENST00000576713 BIVM-ERCC5R4GMW8 1640 aa16.52■□□□□ 0.23
NPLOC4-219ENST00000576713 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
NPLOC4-219ENST00000576713 ZBTB12Q9Y330 459 aaPredicted RBP16.5■□□□□ 0.23
NPLOC4-219ENST00000576713 SOGA1O94964 1423 aa16.5■□□□□ 0.23
NPLOC4-219ENST00000576713 EIF4G3O43432 1585 aaKnown RBP16.48■□□□□ 0.23
NPLOC4-219ENST00000576713 WDR97A6NE52 1622 aa16.46■□□□□ 0.23
NPLOC4-219ENST00000576713 AQRO60306 1485 aaKnown RBP eCLIP16.46■□□□□ 0.232e-6■■■■□ 19.4
NPLOC4-219ENST00000576713 TDRD9Q8NDG6 1382 aaKnown RBP16.43■□□□□ 0.22
NPLOC4-219ENST00000576713 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
NPLOC4-219ENST00000576713 ABCA5Q8WWZ7 1642 aa16.36■□□□□ 0.21
NPLOC4-219ENST00000576713 SPDYE4A6NLX3 237 aa16.33■□□□□ 0.2
NPLOC4-219ENST00000576713 GAPVD1Q14C86 1478 aa16.3■□□□□ 0.2
NPLOC4-219ENST00000576713 PBRM1Q86U86 1689 aa16.3■□□□□ 0.2
NPLOC4-219ENST00000576713 SNAPC4Q5SXM2 1469 aa16.29■□□□□ 0.2
NPLOC4-219ENST00000576713 GRIN2BQ13224 1484 aa16.28■□□□□ 0.2
NPLOC4-219ENST00000576713 OSCARQ8IYS5 282 aa16.27■□□□□ 0.2
NPLOC4-219ENST00000576713 CHD1O14646 1710 aa16.24■□□□□ 0.19
NPLOC4-219ENST00000576713 MAGI1Q96QZ7 1491 aaPredicted RBP16.22■□□□□ 0.19
NPLOC4-219ENST00000576713 RUSC2Q8N2Y8 1516 aa16.19■□□□□ 0.18
NPLOC4-219ENST00000576713 ADAMTS12P58397 1594 aa16.18■□□□□ 0.18
NPLOC4-219ENST00000576713 SYNJ2O15056 1496 aa16.17■□□□□ 0.18
NPLOC4-219ENST00000576713 ERICH3Q5RHP9 1530 aa16.17■□□□□ 0.18
NPLOC4-219ENST00000576713 TRIM41Q8WV44 630 aa16.16■□□□□ 0.18
NPLOC4-219ENST00000576713 KIF27Q86VH2 1401 aa16.14■□□□□ 0.17
NPLOC4-219ENST00000576713 PROM2Q8N271 834 aa16.14■□□□□ 0.17
NPLOC4-219ENST00000576713 IGF1RP08069 1367 aa16.13■□□□□ 0.17
NPLOC4-219ENST00000576713 CHMP7Q8WUX9 453 aaPredicted RBP16.11■□□□□ 0.17
NPLOC4-219ENST00000576713 FHAD1B1AJZ9 1412 aa16.11■□□□□ 0.17
NPLOC4-219ENST00000576713 GRIN2AQ12879 1464 aa16.1■□□□□ 0.17
NPLOC4-219ENST00000576713 SPDYE2BA6NHP3 402 aa16.1■□□□□ 0.17
NPLOC4-219ENST00000576713 SPDYE6P0CI01 402 aa16.1■□□□□ 0.17
NPLOC4-219ENST00000576713 SPDYE2Q495Y8 402 aa16.1■□□□□ 0.17
NPLOC4-219ENST00000576713 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
NPLOC4-219ENST00000576713 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.17
NPLOC4-219ENST00000576713 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.17
NPLOC4-219ENST00000576713 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.17
NPLOC4-219ENST00000576713 ZNF692Q9BU19 519 aaPredicted RBP16.08■□□□□ 0.16
NPLOC4-219ENST00000576713 CEP170Q5SW79 1584 aa16.07■□□□□ 0.16
NPLOC4-219ENST00000576713 ARHGEF11O15085 1522 aa16.05■□□□□ 0.16
NPLOC4-219ENST00000576713 CUL7Q14999 1698 aa16.03■□□□□ 0.16
NPLOC4-219ENST00000576713 NUP160Q12769 1436 aa16.02■□□□□ 0.16
NPLOC4-219ENST00000576713 SSUH2Q9Y2M2 353 aa16.02■□□□□ 0.16
NPLOC4-219ENST00000576713 CARMIL1Q5VZK9 1371 aa15.99■□□□□ 0.15
NPLOC4-219ENST00000576713 ERCC6L2Q5T890 1561 aa15.95■□□□□ 0.14
NPLOC4-219ENST00000576713 FBXO3Q9UK99 471 aa15.94■□□□□ 0.14
NPLOC4-219ENST00000576713 ARAP1Q96P48 1450 aa15.92■□□□□ 0.14
NPLOC4-219ENST00000576713 PRXQ9BXM0 1461 aa15.92■□□□□ 0.14
NPLOC4-219ENST00000576713 SHROOM2Q13796 1616 aa15.91■□□□□ 0.14
NPLOC4-219ENST00000576713 RAPGEF2Q9Y4G8 1499 aa15.91■□□□□ 0.14
NPLOC4-219ENST00000576713 FAM9AQ8IZU1 332 aaPredicted RBP15.9■□□□□ 0.14
NPLOC4-219ENST00000576713 KIAA0586Q9BVV6 1533 aa15.86■□□□□ 0.13
NPLOC4-219ENST00000576713 CYB5RLQ6IPT4 315 aa15.86■□□□□ 0.13
NPLOC4-219ENST00000576713 RBM42Q9BTD8 480 aaKnown RBP15.85■□□□□ 0.13
NPLOC4-219ENST00000576713 EEA1Q15075 1411 aa15.85■□□□□ 0.13
NPLOC4-219ENST00000576713 JPH4Q96JJ6 628 aa15.82■□□□□ 0.12
NPLOC4-219ENST00000576713 PRG4Q92954 1404 aaPredicted RBP15.82■□□□□ 0.12
NPLOC4-219ENST00000576713 IQGAP2Q13576 1575 aa15.8■□□□□ 0.12
NPLOC4-219ENST00000576713 CTTNBP2Q8WZ74 1663 aa15.77■□□□□ 0.12
NPLOC4-219ENST00000576713 KIF21BO75037 1637 aa15.76■□□□□ 0.11
NPLOC4-219ENST00000576713 DISP1Q96F81 1524 aa15.74■□□□□ 0.11
NPLOC4-219ENST00000576713 AKT1S1Q96B36 256 aa15.73■□□□□ 0.11
NPLOC4-219ENST00000576713 UGGT2Q9NYU1 1516 aa15.73■□□□□ 0.11
NPLOC4-219ENST00000576713 VASPP50552 380 aaPredicted RBP15.72■□□□□ 0.11
NPLOC4-219ENST00000576713 KIAA0556O60303 1618 aa15.68■□□□□ 0.1
NPLOC4-219ENST00000576713 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
NPLOC4-219ENST00000576713 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
NPLOC4-219ENST00000576713 CARMIL2Q6F5E8 1435 aa15.63■□□□□ 0.09
NPLOC4-219ENST00000576713 TTBK1Q5TCY1 1321 aaPredicted RBP15.63■□□□□ 0.09
NPLOC4-219ENST00000576713 ADCY10Q96PN6 1610 aa15.62■□□□□ 0.09
NPLOC4-219ENST00000576713 SAMD9Q5K651 1589 aa15.62■□□□□ 0.09
NPLOC4-219ENST00000576713 TNIKQ9UKE5 1360 aa15.62■□□□□ 0.09
NPLOC4-219ENST00000576713 PTPRGP23470 1445 aa15.6■□□□□ 0.09
NPLOC4-219ENST00000576713 AMER1Q5JTC6 1135 aaPredicted RBP15.6■□□□□ 0.09
NPLOC4-219ENST00000576713 RANGAP1P46060 587 aaPredicted RBP15.59■□□□□ 0.09
NPLOC4-219ENST00000576713 RTN4Q9NQC3 1192 aaKnown RBP15.59■□□□□ 0.09
NPLOC4-219ENST00000576713 P3H3Q8IVL6 736 aa15.58■□□□□ 0.08
NPLOC4-219ENST00000576713 REM2Q8IYK8 340 aaPredicted RBP15.58■□□□□ 0.08
NPLOC4-219ENST00000576713 UBTFP17480 764 aaKnown RBP15.56■□□□□ 0.08
NPLOC4-219ENST00000576713 IFNLR1Q8IU57 520 aaPredicted RBP15.55■□□□□ 0.08
NPLOC4-219ENST00000576713 SPDYE1Q8NFV5 336 aaPredicted RBP15.55■□□□□ 0.08
NPLOC4-219ENST00000576713 PLB1Q6P1J6 1458 aa15.54■□□□□ 0.08
NPLOC4-219ENST00000576713 FHOD3Q2V2M9 1422 aa15.53■□□□□ 0.08
NPLOC4-219ENST00000576713 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
NPLOC4-219ENST00000576713 ABCA8O94911 1581 aa15.51■□□□□ 0.07
NPLOC4-219ENST00000576713 ABCC2Q92887 1545 aa15.51■□□□□ 0.07
NPLOC4-219ENST00000576713 UHRF1BP1LA0JNW5 1464 aa15.5■□□□□ 0.07
NPLOC4-219ENST00000576713 ARHGAP35Q9NRY4 1499 aa15.5■□□□□ 0.07
NPLOC4-219ENST00000576713 EFCAB5A4FU69 1503 aa15.49■□□□□ 0.07
NPLOC4-219ENST00000576713 LOC105371045A0A1W2PR82 267 aa15.48■□□□□ 0.07
NPLOC4-219ENST00000576713 MIER1Q8N108 512 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms