RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 FBXO3Q9UK99 471 aa11.74□□□□□ -0.53
NUP88-212ENST00000576708 SP7Q8TDD2 431 aaPredicted RBP11.73□□□□□ -0.53
NUP88-212ENST00000576708 RSF1Q96T23 1441 aaPredicted RBP11.73□□□□□ -0.53
NUP88-212ENST00000576708 MRC2Q9UBG0 1479 aa11.68□□□□□ -0.54
NUP88-212ENST00000576708 REM2Q8IYK8 340 aaPredicted RBP11.67□□□□□ -0.54
NUP88-212ENST00000576708 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.54
NUP88-212ENST00000576708 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
NUP88-212ENST00000576708 WDR62O43379 1518 aa11.64□□□□□ -0.55
NUP88-212ENST00000576708 CEP164Q9UPV0 1460 aa11.63□□□□□ -0.55
NUP88-212ENST00000576708 CFTRP13569 1480 aa11.63□□□□□ -0.55
NUP88-212ENST00000576708 VASPP50552 380 aaPredicted RBP11.62□□□□□ -0.55
NUP88-212ENST00000576708 CLEC11AQ9Y240 323 aa11.61□□□□□ -0.55
NUP88-212ENST00000576708 SPDYE1Q8NFV5 336 aaPredicted RBP11.59□□□□□ -0.55
NUP88-212ENST00000576708 STAG3Q9UJ98 1225 aa11.59□□□□□ -0.55
NUP88-212ENST00000576708 URB2Q14146 1524 aaKnown RBP11.56□□□□□ -0.56
NUP88-212ENST00000576708 PIP4P2Q8N4L2 257 aa11.56□□□□□ -0.56
NUP88-212ENST00000576708 CCDC88BA6NC98 1476 aa11.56□□□□□ -0.56
NUP88-212ENST00000576708 PITPNM1O00562 1244 aa11.54□□□□□ -0.56
NUP88-212ENST00000576708 IFNLR1Q8IU57 520 aaPredicted RBP11.5□□□□□ -0.57
NUP88-212ENST00000576708 MIER1Q8N108 512 aa11.5□□□□□ -0.57
NUP88-212ENST00000576708 PLCD3Q8N3E9 789 aa11.5□□□□□ -0.57
NUP88-212ENST00000576708 TRIM41Q8WV44 630 aa11.49□□□□□ -0.57
NUP88-212ENST00000576708 PRR29P0C7W0 189 aa11.48□□□□□ -0.57
NUP88-212ENST00000576708 PRDM2Q13029 1718 aa11.46□□□□□ -0.57
NUP88-212ENST00000576708 ZNF608Q9ULD9 1512 aaPredicted RBP11.44□□□□□ -0.58
NUP88-212ENST00000576708 KLHL34Q8N239 644 aa11.43□□□□□ -0.58
NUP88-212ENST00000576708 RTN4Q9NQC3 1192 aaKnown RBP11.43□□□□□ -0.58
NUP88-212ENST00000576708 TOPBP1Q92547 1522 aa11.42□□□□□ -0.58
NUP88-212ENST00000576708 HAX1O00165 279 aa11.42□□□□□ -0.58
NUP88-212ENST00000576708 FXR2P51116 673 aaKnown RBP eCLIP11.42□□□□□ -0.58
NUP88-212ENST00000576708 IFT140Q96RY7 1462 aa11.4□□□□□ -0.58
NUP88-212ENST00000576708 EVX2Q03828 476 aa11.38□□□□□ -0.59
NUP88-212ENST00000576708 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
NUP88-212ENST00000576708 AMER1Q5JTC6 1135 aaPredicted RBP11.37□□□□□ -0.59
NUP88-212ENST00000576708 CREBZFQ9NS37 354 aa11.37□□□□□ -0.59
NUP88-212ENST00000576708 DNMBPQ6XZF7 1577 aa11.37□□□□□ -0.59
NUP88-212ENST00000576708 ABCC8Q09428 1581 aa11.35□□□□□ -0.59
NUP88-212ENST00000576708 CHADLQ6NUI6 762 aa11.34□□□□□ -0.59
NUP88-212ENST00000576708 EIF4G3O43432 1585 aaKnown RBP11.33□□□□□ -0.6
NUP88-212ENST00000576708 AQRO60306 1485 aaKnown RBP eCLIP11.33□□□□□ -0.6
NUP88-212ENST00000576708 TARBP1Q13395 1621 aaKnown RBP11.31□□□□□ -0.6
NUP88-212ENST00000576708 SPOCK2Q92563 424 aa11.31□□□□□ -0.6
NUP88-212ENST00000576708 POLA1P09884 1462 aaPredicted RBP11.31□□□□□ -0.6
NUP88-212ENST00000576708 RAD54L2Q9Y4B4 1467 aa11.31□□□□□ -0.6
NUP88-212ENST00000576708 SUPT5HO00267 1087 aaKnown RBP11.29□□□□□ -0.6
NUP88-212ENST00000576708 RIMBP3CA6NJZ7 1639 aa11.28□□□□□ -0.6
NUP88-212ENST00000576708 RIMBP3BA6NNM3 1639 aa11.28□□□□□ -0.6
NUP88-212ENST00000576708 RIMBP3Q9UFD9 1639 aa11.28□□□□□ -0.6
NUP88-212ENST00000576708 ZBTB47Q9UFB7 747 aaPredicted RBP11.28□□□□□ -0.6
NUP88-212ENST00000576708 TDRD9Q8NDG6 1382 aaKnown RBP11.28□□□□□ -0.6
NUP88-212ENST00000576708 SOGA1O94964 1423 aa11.27□□□□□ -0.6
NUP88-212ENST00000576708 PRKAR2AP13861 404 aaKnown RBP11.26□□□□□ -0.61
NUP88-212ENST00000576708 FGD5Q6ZNL6 1462 aa11.25□□□□□ -0.61
NUP88-212ENST00000576708 CUX1P39880 1505 aa11.25□□□□□ -0.61
NUP88-212ENST00000576708 MNX1P50219 401 aaPredicted RBP11.25□□□□□ -0.61
NUP88-212ENST00000576708 CHD1O14646 1710 aa11.25□□□□□ -0.61
NUP88-212ENST00000576708 ARHGEF11O15085 1522 aa11.25□□□□□ -0.61
NUP88-212ENST00000576708 SNAPC4Q5SXM2 1469 aa11.2□□□□□ -0.62
NUP88-212ENST00000576708 CYB5RLQ6IPT4 315 aa11.2□□□□□ -0.62
NUP88-212ENST00000576708 FARP1Q9Y4F1 1045 aaPredicted RBP11.18□□□□□ -0.62
NUP88-212ENST00000576708 NUBP1P53384 320 aa11.17□□□□□ -0.62
NUP88-212ENST00000576708 CIZ1Q9ULV3 898 aaPredicted RBP11.17□□□□□ -0.62
NUP88-212ENST00000576708 PKD2Q13563 968 aa11.16□□□□□ -0.62
NUP88-212ENST00000576708 CHMP7Q8WUX9 453 aaPredicted RBP11.16□□□□□ -0.62
NUP88-212ENST00000576708 ARAP1Q96P48 1450 aa11.15□□□□□ -0.62
NUP88-212ENST00000576708 NPM1P06748 294 aaKnown RBP eCLIP11.15□□□□□ -0.62
NUP88-212ENST00000576708 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
NUP88-212ENST00000576708 WDR97A6NE52 1622 aa11.13□□□□□ -0.63
NUP88-212ENST00000576708 RASEFQ8IZ41 740 aa11.13□□□□□ -0.63
NUP88-212ENST00000576708 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
NUP88-212ENST00000576708 GAPVD1Q14C86 1478 aa11.12□□□□□ -0.63
NUP88-212ENST00000576708 CLASP1Q7Z460 1538 aa11.11□□□□□ -0.63
NUP88-212ENST00000576708 DCAF8Q5TAQ9 597 aa11.11□□□□□ -0.63
NUP88-212ENST00000576708 SYNJ2O15056 1496 aa11.1□□□□□ -0.63
NUP88-212ENST00000576708 PBRM1Q86U86 1689 aa11.1□□□□□ -0.63
NUP88-212ENST00000576708 ABCA10Q8WWZ4 1543 aa11.09□□□□□ -0.63
NUP88-212ENST00000576708 SYNJ1O43426 1573 aa11.09□□□□□ -0.63
NUP88-212ENST00000576708 ABCA5Q8WWZ7 1642 aa11.08□□□□□ -0.64
NUP88-212ENST00000576708 C19orf67A6NJJ6 358 aa11.07□□□□□ -0.64
NUP88-212ENST00000576708 ECM2O94769 699 aaPredicted RBP11.07□□□□□ -0.64
NUP88-212ENST00000576708 FAM212AQ96EL1 285 aa11.07□□□□□ -0.64
NUP88-212ENST00000576708 WRNQ14191 1432 aaPredicted RBP eCLIP11.06□□□□□ -0.64
NUP88-212ENST00000576708 GSE1Q14687 1217 aa11.05□□□□□ -0.64
NUP88-212ENST00000576708 TSPYL2Q9H2G4 693 aaPredicted RBP11.05□□□□□ -0.64
NUP88-212ENST00000576708 TOP2BQ02880 1626 aa11.04□□□□□ -0.64
NUP88-212ENST00000576708 BIVM-ERCC5R4GMW8 1640 aa11.03□□□□□ -0.64
NUP88-212ENST00000576708 GABBR2O75899 941 aa11.01□□□□□ -0.65
NUP88-212ENST00000576708 GRIN2AQ12879 1464 aa11□□□□□ -0.65
NUP88-212ENST00000576708 ADAMTS12P58397 1594 aa11□□□□□ -0.65
NUP88-212ENST00000576708 ERCC6L2Q5T890 1561 aa11□□□□□ -0.65
NUP88-212ENST00000576708 LHX8Q68G74 356 aa10.99□□□□□ -0.65
NUP88-212ENST00000576708 CEP170Q5SW79 1584 aa10.99□□□□□ -0.65
NUP88-212ENST00000576708 RGL2O15211 777 aa10.98□□□□□ -0.65
NUP88-212ENST00000576708 FHAD1B1AJZ9 1412 aa10.97□□□□□ -0.65
NUP88-212ENST00000576708 NUP160Q12769 1436 aa10.96□□□□□ -0.65
NUP88-212ENST00000576708 PYGBP11216 843 aa10.96□□□□□ -0.65
NUP88-212ENST00000576708 ERICH3Q5RHP9 1530 aa10.94□□□□□ -0.66
NUP88-212ENST00000576708 CD44P16070 742 aaKnown RBP10.94□□□□□ -0.66
NUP88-212ENST00000576708 PAK3O75914 559 aaPredicted RBP10.93□□□□□ -0.66
NUP88-212ENST00000576708 ZRANB1Q9UGI0 708 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms