RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 AEBP2Q6ZN18 517 aaPredicted RBP21.18■□□□□ 0.98
NUP88-212ENST00000576708 CHIC1Q5VXU3 224 aa20.71■□□□□ 0.91
NUP88-212ENST00000576708 PHF23Q9BUL5 403 aaPredicted RBP18.28■□□□□ 0.52
NUP88-212ENST00000576708 SENP3Q9H4L4 574 aaPredicted RBP18.02■□□□□ 0.48
NUP88-212ENST00000576708 FOXD1Q16676 465 aa16.94■□□□□ 0.3
NUP88-212ENST00000576708 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
NUP88-212ENST00000576708 POTEDQ86YR6 584 aa16.45■□□□□ 0.22
NUP88-212ENST00000576708 ADRA2BP18089 450 aa16.11■□□□□ 0.17
NUP88-212ENST00000576708 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
NUP88-212ENST00000576708 MSH5O43196 834 aa15.93■□□□□ 0.14
NUP88-212ENST00000576708 PIAS4Q8N2W9 510 aaPredicted RBP15.69■□□□□ 0.1
NUP88-212ENST00000576708 NISCHQ9Y2I1 1504 aa15.51■□□□□ 0.07
NUP88-212ENST00000576708 PPP4R3CPQ6ZMV5 832 aa14.91□□□□□ -0.02
NUP88-212ENST00000576708 KCNA4P22459 653 aa14.75□□□□□ -0.05
NUP88-212ENST00000576708 SCAF1Q9H7N4 1312 aaKnown RBP14.64□□□□□ -0.07
NUP88-212ENST00000576708 MAPK8IP2Q13387 824 aaPredicted RBP14.6□□□□□ -0.07
NUP88-212ENST00000576708 NCBP3Q53F19 620 aaKnown RBP14.5□□□□□ -0.09
NUP88-212ENST00000576708 CNKSR2Q8WXI2 1034 aa14.42□□□□□ -0.1
NUP88-212ENST00000576708 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
NUP88-212ENST00000576708 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.13
NUP88-212ENST00000576708 RNF216Q9NWF9 866 aaPredicted RBP14.1□□□□□ -0.15
NUP88-212ENST00000576708 SLC4A1APQ9BWU0 796 aaKnown RBP14.05□□□□□ -0.16
NUP88-212ENST00000576708 HOXD11P31277 338 aaPredicted RBP14.01□□□□□ -0.17
NUP88-212ENST00000576708 CACNB1Q02641 598 aaPredicted RBP13.97□□□□□ -0.17
NUP88-212ENST00000576708 ABCC9O60706 1549 aa13.95□□□□□ -0.18
NUP88-212ENST00000576708 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
NUP88-212ENST00000576708 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
NUP88-212ENST00000576708 DNAJC5BQ9UF47 199 aa13.76□□□□□ -0.21
NUP88-212ENST00000576708 DCAF8L1A6NGE4 600 aa13.74□□□□□ -0.21
NUP88-212ENST00000576708 RNF39Q9H2S5 420 aa13.62□□□□□ -0.23
NUP88-212ENST00000576708 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
NUP88-212ENST00000576708 ZBTB22O15209 634 aa13.59□□□□□ -0.23
NUP88-212ENST00000576708 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
NUP88-212ENST00000576708 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
NUP88-212ENST00000576708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.26
NUP88-212ENST00000576708 C1QBPQ07021 282 aaKnown RBP13.34□□□□□ -0.27
NUP88-212ENST00000576708 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
NUP88-212ENST00000576708 U3KPZ7 1027 aaPredicted RBP13.21□□□□□ -0.29
NUP88-212ENST00000576708 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
NUP88-212ENST00000576708 DCAF8L2P0C7V8 631 aa13.17□□□□□ -0.3
NUP88-212ENST00000576708 NACADO15069 1562 aa13.11□□□□□ -0.31
NUP88-212ENST00000576708 PABPN1Q86U42 306 aaKnown RBP eCLIP13.02□□□□□ -0.33
NUP88-212ENST00000576708 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
NUP88-212ENST00000576708 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
NUP88-212ENST00000576708 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
NUP88-212ENST00000576708 ATXN8OSP0DMR3 200 aa12.94□□□□□ -0.34
NUP88-212ENST00000576708 ATF5Q9Y2D1 282 aaPredicted RBP12.94□□□□□ -0.34
NUP88-212ENST00000576708 UNC13AQ9UPW8 1703 aa12.92□□□□□ -0.34
NUP88-212ENST00000576708 MYO15BQ96JP2 1530 aa12.9□□□□□ -0.34
NUP88-212ENST00000576708 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
NUP88-212ENST00000576708 ZCCHC6Q5VYS8 1495 aaKnown RBP12.85□□□□□ -0.35
NUP88-212ENST00000576708 SPINK5Q9NQ38 1064 aaPredicted RBP12.84□□□□□ -0.35
NUP88-212ENST00000576708 APLP2Q06481 763 aa12.81□□□□□ -0.36
NUP88-212ENST00000576708 POTEHQ6S545 545 aa12.77□□□□□ -0.37
NUP88-212ENST00000576708 CAPN15O75808 1086 aa12.76□□□□□ -0.37
NUP88-212ENST00000576708 DCAF1Q9Y4B6 1507 aa12.76□□□□□ -0.37
NUP88-212ENST00000576708 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
NUP88-212ENST00000576708 SCRIBQ14160 1630 aa12.71□□□□□ -0.37
NUP88-212ENST00000576708 ZNF219Q9P2Y4 722 aaPredicted RBP12.68□□□□□ -0.38
NUP88-212ENST00000576708 DSG3P32926 999 aa12.6□□□□□ -0.39
NUP88-212ENST00000576708 SHROOM4Q9ULL8 1493 aa12.59□□□□□ -0.39
NUP88-212ENST00000576708 ABCB7O75027 752 aa12.57□□□□□ -0.4
NUP88-212ENST00000576708 CC2D2AQ9P2K1 1620 aa12.55□□□□□ -0.4
NUP88-212ENST00000576708 POLA2Q14181 598 aa12.55□□□□□ -0.4
NUP88-212ENST00000576708 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
NUP88-212ENST00000576708 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.4
NUP88-212ENST00000576708 MKRN4PQ13434 485 aaPredicted RBP12.35□□□□□ -0.43
NUP88-212ENST00000576708 FBLN2P98095 1184 aa12.31□□□□□ -0.44
NUP88-212ENST00000576708 FKBP8Q14318 412 aa12.3□□□□□ -0.44
NUP88-212ENST00000576708 ZBTB12Q9Y330 459 aaPredicted RBP12.24□□□□□ -0.45
NUP88-212ENST00000576708 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
NUP88-212ENST00000576708 OSCARQ8IYS5 282 aa12.13□□□□□ -0.47
NUP88-212ENST00000576708 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
NUP88-212ENST00000576708 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
NUP88-212ENST00000576708 SMARCA4P51532 1647 aa12.09□□□□□ -0.47
NUP88-212ENST00000576708 SMARCA2P51531 1590 aa12.03□□□□□ -0.48
NUP88-212ENST00000576708 BAZ1AQ9NRL2 1556 aaPredicted RBP12.01□□□□□ -0.49
NUP88-212ENST00000576708 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
NUP88-212ENST00000576708 ERCC6Q03468 1493 aa12□□□□□ -0.49
NUP88-212ENST00000576708 NESP48681 1621 aa12□□□□□ -0.49
NUP88-212ENST00000576708 ZNF692Q9BU19 519 aaPredicted RBP11.99□□□□□ -0.49
NUP88-212ENST00000576708 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
NUP88-212ENST00000576708 BAZ1BQ9UIG0 1483 aaKnown RBP11.98□□□□□ -0.49
NUP88-212ENST00000576708 SPDYE2BA6NHP3 402 aa11.96□□□□□ -0.49
NUP88-212ENST00000576708 SPDYE6P0CI01 402 aa11.96□□□□□ -0.49
NUP88-212ENST00000576708 SPDYE2Q495Y8 402 aa11.96□□□□□ -0.49
NUP88-212ENST00000576708 DNAJC5Q9H3Z4 198 aa11.96□□□□□ -0.49
NUP88-212ENST00000576708 PEG3Q9GZU2 1588 aa11.93□□□□□ -0.5
NUP88-212ENST00000576708 RBM42Q9BTD8 480 aaKnown RBP11.93□□□□□ -0.5
NUP88-212ENST00000576708 CUX2O14529 1486 aa11.92□□□□□ -0.5
NUP88-212ENST00000576708 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
NUP88-212ENST00000576708 SSUH2Q9Y2M2 353 aa11.89□□□□□ -0.51
NUP88-212ENST00000576708 PROM2Q8N271 834 aa11.88□□□□□ -0.51
NUP88-212ENST00000576708 WIZO95785 1651 aa11.84□□□□□ -0.51
NUP88-212ENST00000576708 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.52
NUP88-212ENST00000576708 THOC2Q8NI27 1593 aaKnown RBP11.81□□□□□ -0.52
NUP88-212ENST00000576708 KIF21AQ7Z4S6 1674 aa11.79□□□□□ -0.52
NUP88-212ENST00000576708 PDS5BQ9NTI5 1447 aa11.77□□□□□ -0.52
NUP88-212ENST00000576708 CADPSQ9ULU8 1353 aa11.77□□□□□ -0.53
NUP88-212ENST00000576708 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms