RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
NUP88-205ENST00000572809 THOC2Q8NI27 1593 aaKnown RBP13.58□□□□□ -0.24
NUP88-205ENST00000572809 CFTRP13569 1480 aa13.57□□□□□ -0.24
NUP88-205ENST00000572809 DNAJC5Q9H3Z4 198 aa13.56□□□□□ -0.24
NUP88-205ENST00000572809 CLEC11AQ9Y240 323 aa13.56□□□□□ -0.24
NUP88-205ENST00000572809 PRKAR2AP13861 404 aaKnown RBP13.55□□□□□ -0.24
NUP88-205ENST00000572809 CCDC88BA6NC98 1476 aa13.53□□□□□ -0.24
NUP88-205ENST00000572809 FANCD2Q9BXW9 1451 aa13.52□□□□□ -0.25
NUP88-205ENST00000572809 MRC2Q9UBG0 1479 aa13.52□□□□□ -0.25
NUP88-205ENST00000572809 CEP164Q9UPV0 1460 aa13.51□□□□□ -0.25
NUP88-205ENST00000572809 SPDYE1Q8NFV5 336 aaPredicted RBP13.51□□□□□ -0.25
NUP88-205ENST00000572809 WDR62O43379 1518 aa13.46□□□□□ -0.25
NUP88-205ENST00000572809 MKRN4PQ13434 485 aaPredicted RBP13.46□□□□□ -0.25
NUP88-205ENST00000572809 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
NUP88-205ENST00000572809 C19orf67A6NJJ6 358 aa13.41□□□□□ -0.26
NUP88-205ENST00000572809 SUPT5HO00267 1087 aaKnown RBP13.4□□□□□ -0.26
NUP88-205ENST00000572809 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
NUP88-205ENST00000572809 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
NUP88-205ENST00000572809 PRDM2Q13029 1718 aa13.37□□□□□ -0.27
NUP88-205ENST00000572809 GABBR2O75899 941 aa13.34□□□□□ -0.27
NUP88-205ENST00000572809 CHADLQ6NUI6 762 aa13.33□□□□□ -0.28
NUP88-205ENST00000572809 ABCC8Q09428 1581 aa13.29□□□□□ -0.28
NUP88-205ENST00000572809 TOPBP1Q92547 1522 aa13.28□□□□□ -0.28
NUP88-205ENST00000572809 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
NUP88-205ENST00000572809 IFT140Q96RY7 1462 aa13.24□□□□□ -0.29
NUP88-205ENST00000572809 LHX8Q68G74 356 aa13.23□□□□□ -0.29
NUP88-205ENST00000572809 DNMBPQ6XZF7 1577 aa13.23□□□□□ -0.29
NUP88-205ENST00000572809 ZNF608Q9ULD9 1512 aaPredicted RBP13.19□□□□□ -0.3
NUP88-205ENST00000572809 POLA1P09884 1462 aaPredicted RBP13.16□□□□□ -0.3
NUP88-205ENST00000572809 SOGA1O94964 1423 aa13.15□□□□□ -0.3
NUP88-205ENST00000572809 AQRO60306 1485 aaKnown RBP eCLIP13.14□□□□□ -0.31
NUP88-205ENST00000572809 RAD54L2Q9Y4B4 1467 aa13.13□□□□□ -0.31
NUP88-205ENST00000572809 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
NUP88-205ENST00000572809 CUX1P39880 1505 aa13.11□□□□□ -0.31
NUP88-205ENST00000572809 FGD5Q6ZNL6 1462 aa13.1□□□□□ -0.31
NUP88-205ENST00000572809 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
NUP88-205ENST00000572809 EIF4G3O43432 1585 aaKnown RBP13.09□□□□□ -0.31
NUP88-205ENST00000572809 CD44P16070 742 aaKnown RBP13.09□□□□□ -0.31
NUP88-205ENST00000572809 FARP1Q9Y4F1 1045 aaPredicted RBP13.06□□□□□ -0.32
NUP88-205ENST00000572809 POTEIP0CG38 1075 aa13.05□□□□□ -0.32
NUP88-205ENST00000572809 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
NUP88-205ENST00000572809 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
NUP88-205ENST00000572809 CHMP7Q8WUX9 453 aaPredicted RBP13□□□□□ -0.33
NUP88-205ENST00000572809 WDR97A6NE52 1622 aa12.99□□□□□ -0.33
NUP88-205ENST00000572809 GRIN2BQ13224 1484 aa12.98□□□□□ -0.33
NUP88-205ENST00000572809 ABCA10Q8WWZ4 1543 aa12.97□□□□□ -0.33
NUP88-205ENST00000572809 GAPVD1Q14C86 1478 aa12.97□□□□□ -0.33
NUP88-205ENST00000572809 SNAPC4Q5SXM2 1469 aa12.97□□□□□ -0.33
NUP88-205ENST00000572809 CHD1O14646 1710 aa12.96□□□□□ -0.34
NUP88-205ENST00000572809 TOP2BQ02880 1626 aa12.95□□□□□ -0.34
NUP88-205ENST00000572809 MAGI1Q96QZ7 1491 aaPredicted RBP12.94□□□□□ -0.34
NUP88-205ENST00000572809 BIVM-ERCC5R4GMW8 1640 aa12.94□□□□□ -0.34
NUP88-205ENST00000572809 SYNJ1O43426 1573 aa12.94□□□□□ -0.34
NUP88-205ENST00000572809 CLCN6P51797 869 aa12.92□□□□□ -0.34
NUP88-205ENST00000572809 RIMBP3CA6NJZ7 1639 aa12.91□□□□□ -0.34
NUP88-205ENST00000572809 RIMBP3BA6NNM3 1639 aa12.91□□□□□ -0.34
NUP88-205ENST00000572809 RIMBP3Q9UFD9 1639 aa12.91□□□□□ -0.34
NUP88-205ENST00000572809 DCBLD2Q96PD2 775 aa12.91□□□□□ -0.34
NUP88-205ENST00000572809 SYNJ2O15056 1496 aa12.91□□□□□ -0.34
NUP88-205ENST00000572809 ARHGEF11O15085 1522 aa12.9□□□□□ -0.34
NUP88-205ENST00000572809 ABCA5Q8WWZ7 1642 aa12.89□□□□□ -0.35
NUP88-205ENST00000572809 CYB5RLQ6IPT4 315 aa12.89□□□□□ -0.35
NUP88-205ENST00000572809 PBRM1Q86U86 1689 aa12.89□□□□□ -0.35
NUP88-205ENST00000572809 ZRANB1Q9UGI0 708 aa12.86□□□□□ -0.35
NUP88-205ENST00000572809 ZNF579Q8NAF0 562 aaKnown RBP12.84□□□□□ -0.35
NUP88-205ENST00000572809 CLASP1Q7Z460 1538 aa12.83□□□□□ -0.36
NUP88-205ENST00000572809 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
NUP88-205ENST00000572809 CREBZFQ9NS37 354 aa12.81□□□□□ -0.36
NUP88-205ENST00000572809 ERICH3Q5RHP9 1530 aa12.81□□□□□ -0.36
NUP88-205ENST00000572809 GRIN2AQ12879 1464 aa12.8□□□□□ -0.36
NUP88-205ENST00000572809 ARAP1Q96P48 1450 aa12.78□□□□□ -0.36
NUP88-205ENST00000572809 ADAMTS12P58397 1594 aa12.77□□□□□ -0.36
NUP88-205ENST00000572809 GALR2O43603 387 aaPredicted RBP12.75□□□□□ -0.37
NUP88-205ENST00000572809 NUP160Q12769 1436 aa12.75□□□□□ -0.37
NUP88-205ENST00000572809 KIF27Q86VH2 1401 aa12.75□□□□□ -0.37
NUP88-205ENST00000572809 STAG3Q9UJ98 1225 aa12.75□□□□□ -0.37
NUP88-205ENST00000572809 IGF1RP08069 1367 aa12.74□□□□□ -0.37
NUP88-205ENST00000572809 PLSCR2Q9NRY7 297 aa12.74□□□□□ -0.37
NUP88-205ENST00000572809 CEP170Q5SW79 1584 aa12.73□□□□□ -0.37
NUP88-205ENST00000572809 JPH4Q96JJ6 628 aa12.71□□□□□ -0.37
NUP88-205ENST00000572809 CARMIL1Q5VZK9 1371 aa12.66□□□□□ -0.38
NUP88-205ENST00000572809 ERCC6L2Q5T890 1561 aa12.65□□□□□ -0.38
NUP88-205ENST00000572809 PHF12Q96QT6 1004 aa12.65□□□□□ -0.38
NUP88-205ENST00000572809 PRG4Q92954 1404 aaPredicted RBP12.64□□□□□ -0.39
NUP88-205ENST00000572809 SHROOM2Q13796 1616 aa12.64□□□□□ -0.39
NUP88-205ENST00000572809 PAK3O75914 559 aaPredicted RBP12.64□□□□□ -0.39
NUP88-205ENST00000572809 OTUD5Q96G74 571 aa12.64□□□□□ -0.39
NUP88-205ENST00000572809 CUL7Q14999 1698 aa12.64□□□□□ -0.39
NUP88-205ENST00000572809 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
NUP88-205ENST00000572809 POTEB2H3BUK9 544 aa12.63□□□□□ -0.39
NUP88-205ENST00000572809 KIAA0586Q9BVV6 1533 aa12.62□□□□□ -0.39
NUP88-205ENST00000572809 RUSC2Q8N2Y8 1516 aa12.6□□□□□ -0.39
NUP88-205ENST00000572809 FKBP8Q14318 412 aa12.58□□□□□ -0.4
NUP88-205ENST00000572809 NPM1P06748 294 aaKnown RBP eCLIP12.56□□□□□ -0.4
NUP88-205ENST00000572809 RAPGEF2Q9Y4G8 1499 aa12.54□□□□□ -0.4
NUP88-205ENST00000572809 PELP1Q8IZL8 1130 aaKnown RBP12.54□□□□□ -0.4
NUP88-205ENST00000572809 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.41
NUP88-205ENST00000572809 TTBK1Q5TCY1 1321 aaPredicted RBP12.51□□□□□ -0.41
NUP88-205ENST00000572809 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
NUP88-205ENST00000572809 PTPRGP23470 1445 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms