RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 AEBP2Q6ZN18 517 aaPredicted RBP25.65■■□□□ 1.7
NUP88-205ENST00000572809 CHIC1Q5VXU3 224 aa23.95■■□□□ 1.42
NUP88-205ENST00000572809 SENP3Q9H4L4 574 aaPredicted RBP21.91■■□□□ 1.1
NUP88-205ENST00000572809 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
NUP88-205ENST00000572809 FOXD1Q16676 465 aa20.5■□□□□ 0.87
NUP88-205ENST00000572809 POTEDQ86YR6 584 aa19.55■□□□□ 0.72
NUP88-205ENST00000572809 MSH5O43196 834 aa19.3■□□□□ 0.68
NUP88-205ENST00000572809 PIAS4Q8N2W9 510 aaPredicted RBP19.06■□□□□ 0.64
NUP88-205ENST00000572809 PLPPR3Q6T4P5 718 aa18.95■□□□□ 0.62
NUP88-205ENST00000572809 PPP6R1Q9UPN7 881 aa18.88■□□□□ 0.61
NUP88-205ENST00000572809 ADRA2BP18089 450 aa18.8■□□□□ 0.6
NUP88-205ENST00000572809 NISCHQ9Y2I1 1504 aa18.14■□□□□ 0.49
NUP88-205ENST00000572809 MAPK8IP2Q13387 824 aaPredicted RBP17.41■□□□□ 0.38
NUP88-205ENST00000572809 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
NUP88-205ENST00000572809 SCAF1Q9H7N4 1312 aaKnown RBP17.16■□□□□ 0.34
NUP88-205ENST00000572809 CACNB1Q02641 598 aaPredicted RBP16.85■□□□□ 0.29
NUP88-205ENST00000572809 DCAF8L1A6NGE4 600 aa16.7■□□□□ 0.26
NUP88-205ENST00000572809 PPP4R3CPQ6ZMV5 832 aa16.59■□□□□ 0.25
NUP88-205ENST00000572809 HOXD11P31277 338 aaPredicted RBP16.51■□□□□ 0.23
NUP88-205ENST00000572809 RNF39Q9H2S5 420 aa16.43■□□□□ 0.22
NUP88-205ENST00000572809 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
NUP88-205ENST00000572809 RNF216Q9NWF9 866 aaPredicted RBP16.29■□□□□ 0.2
NUP88-205ENST00000572809 C1QBPQ07021 282 aaKnown RBP16.17■□□□□ 0.18
NUP88-205ENST00000572809 CCDC180Q9P1Z9 1646 aa16.15■□□□□ 0.18
NUP88-205ENST00000572809 ABCC9O60706 1549 aa16.02■□□□□ 0.15
NUP88-205ENST00000572809 DNAJC5BQ9UF47 199 aa15.97■□□□□ 0.15
NUP88-205ENST00000572809 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
NUP88-205ENST00000572809 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
NUP88-205ENST00000572809 NPM3O75607 178 aaKnown RBP15.59■□□□□ 0.09
NUP88-205ENST00000572809 U3KPZ7 1027 aaPredicted RBP15.39■□□□□ 0.05
NUP88-205ENST00000572809 DCAF8L2P0C7V8 631 aa15.36■□□□□ 0.05
NUP88-205ENST00000572809 RB1CC1Q8TDY2 1594 aa15.32■□□□□ 0.04
NUP88-205ENST00000572809 SPINK5Q9NQ38 1064 aaPredicted RBP15.31■□□□□ 0.04
NUP88-205ENST00000572809 CAPN15O75808 1086 aa15.3■□□□□ 0.04
NUP88-205ENST00000572809 DSG3P32926 999 aa15.28■□□□□ 0.04
NUP88-205ENST00000572809 NACADO15069 1562 aa15.26■□□□□ 0.03
NUP88-205ENST00000572809 POTEHQ6S545 545 aa15.24■□□□□ 0.03
NUP88-205ENST00000572809 MYO15BQ96JP2 1530 aa15.11■□□□□ 0.01
NUP88-205ENST00000572809 ZCCHC6Q5VYS8 1495 aaKnown RBP15.05■□□□□ -0
NUP88-205ENST00000572809 SLC4A2P04920 1241 aa15□□□□□ -0.01
NUP88-205ENST00000572809 PABPN1Q86U42 306 aaKnown RBP eCLIP15□□□□□ -0.01
NUP88-205ENST00000572809 DCAF1Q9Y4B6 1507 aa14.98□□□□□ -0.01
NUP88-205ENST00000572809 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
NUP88-205ENST00000572809 KCNA4P22459 653 aa14.96□□□□□ -0.01
NUP88-205ENST00000572809 ABCB7O75027 752 aa14.93□□□□□ -0.02
NUP88-205ENST00000572809 UNC13AQ9UPW8 1703 aa14.92□□□□□ -0.02
NUP88-205ENST00000572809 APLP2Q06481 763 aa14.87□□□□□ -0.03
NUP88-205ENST00000572809 ZNF219Q9P2Y4 722 aaPredicted RBP14.87□□□□□ -0.03
NUP88-205ENST00000572809 BICRAQ9NZM4 1560 aa14.85□□□□□ -0.03
NUP88-205ENST00000572809 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.78□□□□□ -0.04
NUP88-205ENST00000572809 HNRNPUL2Q1KMD3 747 aaKnown RBP14.78□□□□□ -0.04
NUP88-205ENST00000572809 SCRIBQ14160 1630 aa14.74□□□□□ -0.05
NUP88-205ENST00000572809 SAMD1Q6SPF0 538 aaPredicted RBP14.69□□□□□ -0.06
NUP88-205ENST00000572809 SHROOM4Q9ULL8 1493 aa14.65□□□□□ -0.06
NUP88-205ENST00000572809 RBM42Q9BTD8 480 aaKnown RBP14.57□□□□□ -0.08
NUP88-205ENST00000572809 EIF4G1Q04637 1599 aaKnown RBP14.47□□□□□ -0.09
NUP88-205ENST00000572809 CC2D2AQ9P2K1 1620 aa14.46□□□□□ -0.09
NUP88-205ENST00000572809 POLA2Q14181 598 aa14.46□□□□□ -0.09
NUP88-205ENST00000572809 CHRDL2Q6WN34 429 aa14.42□□□□□ -0.1
NUP88-205ENST00000572809 MYCNP04198 464 aaPredicted RBP14.41□□□□□ -0.1
NUP88-205ENST00000572809 CECR2Q9BXF3 1484 aa14.41□□□□□ -0.1
NUP88-205ENST00000572809 EHMT2Q96KQ7 1210 aa14.29□□□□□ -0.12
NUP88-205ENST00000572809 SLC4A1APQ9BWU0 796 aaKnown RBP14.19□□□□□ -0.14
NUP88-205ENST00000572809 AKT1S1Q96B36 256 aa14.16□□□□□ -0.14
NUP88-205ENST00000572809 ATF5Q9Y2D1 282 aaPredicted RBP14.15□□□□□ -0.14
NUP88-205ENST00000572809 NCAPD3P42695 1498 aa14.12□□□□□ -0.15
NUP88-205ENST00000572809 SP7Q8TDD2 431 aaPredicted RBP14.09□□□□□ -0.15
NUP88-205ENST00000572809 SMARCA4P51532 1647 aa14.08□□□□□ -0.15
NUP88-205ENST00000572809 ATAD2BQ9ULI0 1458 aa14.08□□□□□ -0.16
NUP88-205ENST00000572809 ZBTB12Q9Y330 459 aaPredicted RBP14.08□□□□□ -0.16
NUP88-205ENST00000572809 BAZ1AQ9NRL2 1556 aaPredicted RBP14.06□□□□□ -0.16
NUP88-205ENST00000572809 FOXD4L1Q9NU39 408 aa14.06□□□□□ -0.16
NUP88-205ENST00000572809 SMARCA2P51531 1590 aa14.05□□□□□ -0.16
NUP88-205ENST00000572809 REM2Q8IYK8 340 aaPredicted RBP14.04□□□□□ -0.16
NUP88-205ENST00000572809 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
NUP88-205ENST00000572809 PIP4P2Q8N4L2 257 aa14□□□□□ -0.17
NUP88-205ENST00000572809 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
NUP88-205ENST00000572809 HMGXB3Q12766 1538 aa13.97□□□□□ -0.17
NUP88-205ENST00000572809 BAZ1BQ9UIG0 1483 aaKnown RBP13.95□□□□□ -0.18
NUP88-205ENST00000572809 PEG3Q9GZU2 1588 aa13.95□□□□□ -0.18
NUP88-205ENST00000572809 CSRNP3Q8WYN3 585 aa13.92□□□□□ -0.18
NUP88-205ENST00000572809 HAX1O00165 279 aa13.89□□□□□ -0.19
NUP88-205ENST00000572809 PITPNM1O00562 1244 aa13.89□□□□□ -0.19
NUP88-205ENST00000572809 FXR2P51116 673 aaKnown RBP eCLIP13.85□□□□□ -0.19
NUP88-205ENST00000572809 ERCC6Q03468 1493 aa13.82□□□□□ -0.2
NUP88-205ENST00000572809 WIZO95785 1651 aa13.82□□□□□ -0.2
NUP88-205ENST00000572809 NESP48681 1621 aa13.81□□□□□ -0.2
NUP88-205ENST00000572809 RSF1Q96T23 1441 aaPredicted RBP13.79□□□□□ -0.2
NUP88-205ENST00000572809 ZBTB22O15209 634 aa13.73□□□□□ -0.21
NUP88-205ENST00000572809 LAMC3Q9Y6N6 1575 aa13.73□□□□□ -0.21
NUP88-205ENST00000572809 CUX2O14529 1486 aa13.71□□□□□ -0.21
NUP88-205ENST00000572809 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.22
NUP88-205ENST00000572809 EVX2Q03828 476 aa13.69□□□□□ -0.22
NUP88-205ENST00000572809 PDS5BQ9NTI5 1447 aa13.69□□□□□ -0.22
NUP88-205ENST00000572809 TOP2AP11388 1531 aaKnown RBP13.64□□□□□ -0.23
NUP88-205ENST00000572809 SPDYE2BA6NHP3 402 aa13.64□□□□□ -0.23
NUP88-205ENST00000572809 SPDYE6P0CI01 402 aa13.64□□□□□ -0.23
NUP88-205ENST00000572809 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
NUP88-205ENST00000572809 ATXN8OSP0DMR3 200 aa13.62□□□□□ -0.23
NUP88-205ENST00000572809 FBLN2P98095 1184 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms