RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CAPN15O75808 1086 aa14.23□□□□□ -0.13
VPS53-214ENST00000572607 SOGA1O94964 1423 aa14.23□□□□□ -0.13
VPS53-214ENST00000572607 TRHP20396 242 aaPredicted RBP14.22□□□□□ -0.13
VPS53-214ENST00000572607 FGD5Q6ZNL6 1462 aa14.22□□□□□ -0.13
VPS53-214ENST00000572607 CUX1P39880 1505 aa14.21□□□□□ -0.13
VPS53-214ENST00000572607 FBLN2P98095 1184 aa14.21□□□□□ -0.13
VPS53-214ENST00000572607 DSG3P32926 999 aa14.2□□□□□ -0.14
VPS53-214ENST00000572607 MAGI1Q96QZ7 1491 aaPredicted RBP14.18□□□□□ -0.14
VPS53-214ENST00000572607 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
VPS53-214ENST00000572607 PBRM1Q86U86 1689 aa14.17□□□□□ -0.14
VPS53-214ENST00000572607 SYNJ2O15056 1496 aa14.14□□□□□ -0.15
VPS53-214ENST00000572607 GRIN2BQ13224 1484 aa14.14□□□□□ -0.15
VPS53-214ENST00000572607 WRNQ14191 1432 aaPredicted RBP eCLIP14.14□□□□□ -0.15
VPS53-214ENST00000572607 ERCC6L2Q5T890 1561 aa14.11□□□□□ -0.15
VPS53-214ENST00000572607 ABCA5Q8WWZ7 1642 aa14.11□□□□□ -0.15
VPS53-214ENST00000572607 GAPVD1Q14C86 1478 aa14.09□□□□□ -0.15
VPS53-214ENST00000572607 APLP2Q06481 763 aa14.08□□□□□ -0.16
VPS53-214ENST00000572607 CHMP7Q8WUX9 453 aaPredicted RBP14.08□□□□□ -0.16
VPS53-214ENST00000572607 TOP2BQ02880 1626 aa14.08□□□□□ -0.16
VPS53-214ENST00000572607 ABCA10Q8WWZ4 1543 aa14.07□□□□□ -0.16
VPS53-214ENST00000572607 BIVM-ERCC5R4GMW8 1640 aa14.06□□□□□ -0.16
VPS53-214ENST00000572607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.05□□□□□ -0.16
VPS53-214ENST00000572607 HNRNPUL2Q1KMD3 747 aaKnown RBP14.05□□□□□ -0.16
VPS53-214ENST00000572607 CEP170Q5SW79 1584 aa14.01□□□□□ -0.17
VPS53-214ENST00000572607 SHROOM2Q13796 1616 aa14.01□□□□□ -0.17
VPS53-214ENST00000572607 ADAMTS12P58397 1594 aa14□□□□□ -0.17
VPS53-214ENST00000572607 KIF13AQ9H1H9 1805 aa14□□□□□ -0.17
VPS53-214ENST00000572607 GRIN2AQ12879 1464 aa13.99□□□□□ -0.17
VPS53-214ENST00000572607 NUP160Q12769 1436 aa13.98□□□□□ -0.17
VPS53-214ENST00000572607 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
VPS53-214ENST00000572607 SAMD1Q6SPF0 538 aaPredicted RBP13.96□□□□□ -0.17
VPS53-214ENST00000572607 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.18
VPS53-214ENST00000572607 FHAD1B1AJZ9 1412 aa13.9□□□□□ -0.19
VPS53-214ENST00000572607 ABCB7O75027 752 aa13.87□□□□□ -0.19
VPS53-214ENST00000572607 KIF27Q86VH2 1401 aa13.87□□□□□ -0.19
VPS53-214ENST00000572607 RUSC2Q8N2Y8 1516 aa13.82□□□□□ -0.2
VPS53-214ENST00000572607 MYCNP04198 464 aaPredicted RBP13.8□□□□□ -0.2
VPS53-214ENST00000572607 PRG4Q92954 1404 aaPredicted RBP13.8□□□□□ -0.2
VPS53-214ENST00000572607 DIP2BQ9P265 1576 aa13.79□□□□□ -0.2
VPS53-214ENST00000572607 ADCY10Q96PN6 1610 aa13.79□□□□□ -0.2
VPS53-214ENST00000572607 ABCC10Q5T3U5 1492 aa13.78□□□□□ -0.2
VPS53-214ENST00000572607 MAPKBP1O60336 1514 aa13.78□□□□□ -0.2
VPS53-214ENST00000572607 IGF1RP08069 1367 aa13.77□□□□□ -0.21
VPS53-214ENST00000572607 CUL7Q14999 1698 aa13.75□□□□□ -0.21
VPS53-214ENST00000572607 JPH4Q96JJ6 628 aa13.74□□□□□ -0.21
VPS53-214ENST00000572607 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
VPS53-214ENST00000572607 CARMIL1Q5VZK9 1371 aa13.72□□□□□ -0.21
VPS53-214ENST00000572607 POTEHQ6S545 545 aa13.7□□□□□ -0.22
VPS53-214ENST00000572607 KDM4FA0A1W2PPD8 638 aa13.69□□□□□ -0.22
VPS53-214ENST00000572607 TSPOAP1O95153 1857 aa13.69□□□□□ -0.22
VPS53-214ENST00000572607 KDM6BO15054 1643 aa13.68□□□□□ -0.22
VPS53-214ENST00000572607 FAM69CQ0P6D2 419 aa13.68□□□□□ -0.22
VPS53-214ENST00000572607 KIAA0586Q9BVV6 1533 aa13.67□□□□□ -0.22
VPS53-214ENST00000572607 PPRC1Q5VV67 1664 aaKnown RBP13.66□□□□□ -0.22
VPS53-214ENST00000572607 RAPGEF2Q9Y4G8 1499 aa13.62□□□□□ -0.23
VPS53-214ENST00000572607 POLA2Q14181 598 aa13.62□□□□□ -0.23
VPS53-214ENST00000572607 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
VPS53-214ENST00000572607 CARMIL2Q6F5E8 1435 aa13.57□□□□□ -0.24
VPS53-214ENST00000572607 IQGAP2Q13576 1575 aa13.57□□□□□ -0.24
VPS53-214ENST00000572607 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
VPS53-214ENST00000572607 GLI2P10070 1586 aa13.56□□□□□ -0.24
VPS53-214ENST00000572607 NPM1P06748 294 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS53-214ENST00000572607 EEA1Q15075 1411 aa13.54□□□□□ -0.24
VPS53-214ENST00000572607 COL17A1Q9UMD9 1497 aaPredicted RBP13.54□□□□□ -0.24
VPS53-214ENST00000572607 ABCC2Q92887 1545 aa13.54□□□□□ -0.24
VPS53-214ENST00000572607 CSRNP3Q8WYN3 585 aa13.52□□□□□ -0.25
VPS53-214ENST00000572607 PTPRGP23470 1445 aa13.52□□□□□ -0.25
VPS53-214ENST00000572607 PRXQ9BXM0 1461 aa13.52□□□□□ -0.25
VPS53-214ENST00000572607 ASXL2Q76L83 1435 aa13.51□□□□□ -0.25
VPS53-214ENST00000572607 TNIKQ9UKE5 1360 aa13.51□□□□□ -0.25
VPS53-214ENST00000572607 TTBK1Q5TCY1 1321 aaPredicted RBP13.51□□□□□ -0.25
VPS53-214ENST00000572607 MAP3K4Q9Y6R4 1608 aa13.5□□□□□ -0.25
VPS53-214ENST00000572607 UHRF1BP1LA0JNW5 1464 aa13.5□□□□□ -0.25
VPS53-214ENST00000572607 ADGRL1O94910 1474 aa13.5□□□□□ -0.25
VPS53-214ENST00000572607 ILDR1Q86SU0 546 aaPredicted RBP13.5□□□□□ -0.25
VPS53-214ENST00000572607 DISP1Q96F81 1524 aa13.49□□□□□ -0.25
VPS53-214ENST00000572607 ATF5Q9Y2D1 282 aaPredicted RBP13.48□□□□□ -0.25
VPS53-214ENST00000572607 UGGT2Q9NYU1 1516 aa13.48□□□□□ -0.25
VPS53-214ENST00000572607 PLB1Q6P1J6 1458 aa13.47□□□□□ -0.25
VPS53-214ENST00000572607 FAM9AQ8IZU1 332 aaPredicted RBP13.46□□□□□ -0.25
VPS53-214ENST00000572607 EPRSP07814 1512 aaKnown RBP13.45□□□□□ -0.26
VPS53-214ENST00000572607 KDM5BQ9UGL1 1544 aa13.45□□□□□ -0.26
VPS53-214ENST00000572607 CTTNBP2Q8WZ74 1663 aa13.45□□□□□ -0.26
VPS53-214ENST00000572607 GOLGA3Q08378 1498 aa13.45□□□□□ -0.26
VPS53-214ENST00000572607 ZCCHC11Q5TAX3 1644 aaKnown RBP13.45□□□□□ -0.26
VPS53-214ENST00000572607 HECW2Q9P2P5 1572 aa13.44□□□□□ -0.26
VPS53-214ENST00000572607 KIAA0556O60303 1618 aa13.43□□□□□ -0.26
VPS53-214ENST00000572607 UACAQ9BZF9 1416 aa13.43□□□□□ -0.26
VPS53-214ENST00000572607 ZBTB22O15209 634 aa13.36□□□□□ -0.27
VPS53-214ENST00000572607 ZBTB12Q9Y330 459 aaPredicted RBP13.35□□□□□ -0.27
VPS53-214ENST00000572607 TEX14Q8IWB6 1497 aa13.35□□□□□ -0.27
VPS53-214ENST00000572607 KIF21BO75037 1637 aa13.35□□□□□ -0.27
VPS53-214ENST00000572607 P3H3Q8IVL6 736 aa13.33□□□□□ -0.28
VPS53-214ENST00000572607 WDR7Q9Y4E6 1490 aa13.33□□□□□ -0.28
VPS53-214ENST00000572607 CFAP43Q8NDM7 1665 aa13.33□□□□□ -0.28
VPS53-214ENST00000572607 RANGAP1P46060 587 aaPredicted RBP13.32□□□□□ -0.28
VPS53-214ENST00000572607 ABCA8O94911 1581 aa13.32□□□□□ -0.28
VPS53-214ENST00000572607 MAGI3Q5TCQ9 1506 aa13.31□□□□□ -0.28
VPS53-214ENST00000572607 UBTFP17480 764 aaKnown RBP13.31□□□□□ -0.28
VPS53-214ENST00000572607 EHMT2Q96KQ7 1210 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms