RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 IFT140Q96RY7 1462 aa11.27□□□□□ -0.6
VPS53-208ENST00000570650 ZNF608Q9ULD9 1512 aaPredicted RBP11.26□□□□□ -0.61
VPS53-208ENST00000570650 TOP2AP11388 1531 aaKnown RBP11.23□□□□□ -0.61
VPS53-208ENST00000570650 RBM42Q9BTD8 480 aaKnown RBP11.21□□□□□ -0.61
VPS53-208ENST00000570650 PRDM2Q13029 1718 aa11.21□□□□□ -0.62
VPS53-208ENST00000570650 ARAP1Q96P48 1450 aa11.2□□□□□ -0.62
VPS53-208ENST00000570650 RSF1Q96T23 1441 aaPredicted RBP11.19□□□□□ -0.62
VPS53-208ENST00000570650 EIF4G3O43432 1585 aaKnown RBP11.19□□□□□ -0.62
VPS53-208ENST00000570650 TOPBP1Q92547 1522 aa11.19□□□□□ -0.62
VPS53-208ENST00000570650 ABCC8Q09428 1581 aa11.16□□□□□ -0.62
VPS53-208ENST00000570650 CHD1O14646 1710 aa11.15□□□□□ -0.62
VPS53-208ENST00000570650 AQRO60306 1485 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS53-208ENST00000570650 SPDYE2BA6NHP3 402 aa11.12□□□□□ -0.63
VPS53-208ENST00000570650 SPDYE6P0CI01 402 aa11.12□□□□□ -0.63
VPS53-208ENST00000570650 SPDYE2Q495Y8 402 aa11.12□□□□□ -0.63
VPS53-208ENST00000570650 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
VPS53-208ENST00000570650 CCDC88BA6NC98 1476 aa11.1□□□□□ -0.63
VPS53-208ENST00000570650 TARBP1Q13395 1621 aaKnown RBP11.09□□□□□ -0.63
VPS53-208ENST00000570650 ZNF692Q9BU19 519 aaPredicted RBP11.07□□□□□ -0.64
VPS53-208ENST00000570650 AKT1S1Q96B36 256 aa11.06□□□□□ -0.64
VPS53-208ENST00000570650 SSUH2Q9Y2M2 353 aa11.05□□□□□ -0.64
VPS53-208ENST00000570650 POLA1P09884 1462 aaPredicted RBP11.05□□□□□ -0.64
VPS53-208ENST00000570650 CLASP1Q7Z460 1538 aa11.04□□□□□ -0.64
VPS53-208ENST00000570650 SPDYE4A6NLX3 237 aa11.02□□□□□ -0.65
VPS53-208ENST00000570650 SNAPC4Q5SXM2 1469 aa11.01□□□□□ -0.65
VPS53-208ENST00000570650 SYNJ1O43426 1573 aa11.01□□□□□ -0.65
VPS53-208ENST00000570650 TDRD9Q8NDG6 1382 aaKnown RBP11.01□□□□□ -0.65
VPS53-208ENST00000570650 RAD54L2Q9Y4B4 1467 aa11□□□□□ -0.65
VPS53-208ENST00000570650 CHMP7Q8WUX9 453 aaPredicted RBP11□□□□□ -0.65
VPS53-208ENST00000570650 SOGA1O94964 1423 aa11□□□□□ -0.65
VPS53-208ENST00000570650 REM2Q8IYK8 340 aaPredicted RBP10.99□□□□□ -0.65
VPS53-208ENST00000570650 WDR97A6NE52 1622 aa10.98□□□□□ -0.65
VPS53-208ENST00000570650 MAGI1Q96QZ7 1491 aaPredicted RBP10.98□□□□□ -0.65
VPS53-208ENST00000570650 GAPVD1Q14C86 1478 aa10.95□□□□□ -0.66
VPS53-208ENST00000570650 SYNJ2O15056 1496 aa10.94□□□□□ -0.66
VPS53-208ENST00000570650 GRIN2BQ13224 1484 aa10.94□□□□□ -0.66
VPS53-208ENST00000570650 FGD5Q6ZNL6 1462 aa10.93□□□□□ -0.66
VPS53-208ENST00000570650 FKBP8Q14318 412 aa10.92□□□□□ -0.66
VPS53-208ENST00000570650 PITPNM1O00562 1244 aa10.89□□□□□ -0.67
VPS53-208ENST00000570650 CUX1P39880 1505 aa10.87□□□□□ -0.67
VPS53-208ENST00000570650 PBRM1Q86U86 1689 aa10.85□□□□□ -0.67
VPS53-208ENST00000570650 CHRDL2Q6WN34 429 aa10.84□□□□□ -0.67
VPS53-208ENST00000570650 PROM2Q8N271 834 aa10.83□□□□□ -0.68
VPS53-208ENST00000570650 ERCC6L2Q5T890 1561 aa10.82□□□□□ -0.68
VPS53-208ENST00000570650 SPDYE1Q8NFV5 336 aaPredicted RBP10.82□□□□□ -0.68
VPS53-208ENST00000570650 CLEC11AQ9Y240 323 aa10.8□□□□□ -0.68
VPS53-208ENST00000570650 GRIN2AQ12879 1464 aa10.8□□□□□ -0.68
VPS53-208ENST00000570650 ABCA5Q8WWZ7 1642 aa10.8□□□□□ -0.68
VPS53-208ENST00000570650 ABCA10Q8WWZ4 1543 aa10.79□□□□□ -0.68
VPS53-208ENST00000570650 CEP170Q5SW79 1584 aa10.79□□□□□ -0.68
VPS53-208ENST00000570650 NUP160Q12769 1436 aa10.78□□□□□ -0.68
VPS53-208ENST00000570650 KIF13AQ9H1H9 1805 aa10.77□□□□□ -0.68
VPS53-208ENST00000570650 SHROOM2Q13796 1616 aa10.75□□□□□ -0.69
VPS53-208ENST00000570650 ADAMTS12P58397 1594 aa10.74□□□□□ -0.69
VPS53-208ENST00000570650 ILDR1Q86SU0 546 aaPredicted RBP10.72□□□□□ -0.69
VPS53-208ENST00000570650 KDM4FA0A1W2PPD8 638 aa10.71□□□□□ -0.69
VPS53-208ENST00000570650 FHAD1B1AJZ9 1412 aa10.71□□□□□ -0.69
VPS53-208ENST00000570650 FAM69CQ0P6D2 419 aa10.71□□□□□ -0.69
VPS53-208ENST00000570650 ABCC10Q5T3U5 1492 aa10.71□□□□□ -0.69
VPS53-208ENST00000570650 WRNQ14191 1432 aaPredicted RBP eCLIP10.69□□□□□ -0.7
VPS53-208ENST00000570650 PRG4Q92954 1404 aaPredicted RBP10.69□□□□□ -0.7
VPS53-208ENST00000570650 PIP4P2Q8N4L2 257 aa10.69□□□□□ -0.7
VPS53-208ENST00000570650 NPM1P06748 294 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS53-208ENST00000570650 FXR2P51116 673 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS53-208ENST00000570650 PRR29P0C7W0 189 aa10.67□□□□□ -0.7
VPS53-208ENST00000570650 JPH4Q96JJ6 628 aa10.67□□□□□ -0.7
VPS53-208ENST00000570650 STAG3Q9UJ98 1225 aa10.67□□□□□ -0.7
VPS53-208ENST00000570650 MAPKBP1O60336 1514 aa10.67□□□□□ -0.7
VPS53-208ENST00000570650 KDM6BO15054 1643 aa10.66□□□□□ -0.7
VPS53-208ENST00000570650 DIP2BQ9P265 1576 aa10.66□□□□□ -0.7
VPS53-208ENST00000570650 ERICH3Q5RHP9 1530 aa10.65□□□□□ -0.7
VPS53-208ENST00000570650 POTEHQ6S545 545 aa10.65□□□□□ -0.7
VPS53-208ENST00000570650 RUSC2Q8N2Y8 1516 aa10.6□□□□□ -0.71
VPS53-208ENST00000570650 TOP2BQ02880 1626 aa10.6□□□□□ -0.71
VPS53-208ENST00000570650 ADCY10Q96PN6 1610 aa10.6□□□□□ -0.71
VPS53-208ENST00000570650 BIVM-ERCC5R4GMW8 1640 aa10.6□□□□□ -0.71
VPS53-208ENST00000570650 PRKAR2AP13861 404 aaKnown RBP10.59□□□□□ -0.71
VPS53-208ENST00000570650 CHADLQ6NUI6 762 aa10.59□□□□□ -0.71
VPS53-208ENST00000570650 TSPOAP1O95153 1857 aa10.58□□□□□ -0.72
VPS53-208ENST00000570650 CREBZFQ9NS37 354 aa10.54□□□□□ -0.72
VPS53-208ENST00000570650 ADGRL1O94910 1474 aa10.54□□□□□ -0.72
VPS53-208ENST00000570650 KIAA0586Q9BVV6 1533 aa10.53□□□□□ -0.72
VPS53-208ENST00000570650 FBXO3Q9UK99 471 aa10.5□□□□□ -0.73
VPS53-208ENST00000570650 HECW2Q9P2P5 1572 aa10.5□□□□□ -0.73
VPS53-208ENST00000570650 PTPRGP23470 1445 aa10.5□□□□□ -0.73
VPS53-208ENST00000570650 ABCC2Q92887 1545 aa10.48□□□□□ -0.73
VPS53-208ENST00000570650 GLI2P10070 1586 aa10.48□□□□□ -0.73
VPS53-208ENST00000570650 PLB1Q6P1J6 1458 aa10.48□□□□□ -0.73
VPS53-208ENST00000570650 PPRC1Q5VV67 1664 aaKnown RBP10.47□□□□□ -0.73
VPS53-208ENST00000570650 ASXL2Q76L83 1435 aa10.47□□□□□ -0.73
VPS53-208ENST00000570650 COL17A1Q9UMD9 1497 aaPredicted RBP10.45□□□□□ -0.74
VPS53-208ENST00000570650 TNIKQ9UKE5 1360 aa10.45□□□□□ -0.74
VPS53-208ENST00000570650 TTBK1Q5TCY1 1321 aaPredicted RBP10.45□□□□□ -0.74
VPS53-208ENST00000570650 SUPT5HO00267 1087 aaKnown RBP10.45□□□□□ -0.74
VPS53-208ENST00000570650 CARMIL2Q6F5E8 1435 aa10.44□□□□□ -0.74
VPS53-208ENST00000570650 IGF1RP08069 1367 aa10.44□□□□□ -0.74
VPS53-208ENST00000570650 MIER1Q8N108 512 aa10.44□□□□□ -0.74
VPS53-208ENST00000570650 FARP1Q9Y4F1 1045 aaPredicted RBP10.44□□□□□ -0.74
VPS53-208ENST00000570650 MNX1P50219 401 aaPredicted RBP10.43□□□□□ -0.74
VPS53-208ENST00000570650 UHRF1BP1LA0JNW5 1464 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms